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Table 3.

Summary of SNPs and genes identified through whole genome association study using 10K chip

No.GeneSNPLocuslinkCytobandDescription
1 ABCA4 rs546550 24 1p22.1-p21 ATP-binding cassette, subfamily A member 4 
2 ACYP2 rs2010461 98 2p16.2 Muscle-type acylphosphatase 2 
3 AKAP2 rs723706 11217 9q31-q33 A-kinase anchor protein 2 isoform 2 
4 ALS2CR12 rs1406121 130540 2q33.2 ALS2CR12 gene product 
5 C13orf18 rs1408195 80183 13q14.11 Chromosome 13 open reading frame 18 
6 DNAH8 rs2050180 1769 6p21.31-p21.1 Dynein, axonemal, heavy polypeptide 8 
7 EFA6R rs1565138 23362 8p23.3 ADP-ribosylation factor guanine nucleotide factor 6 
8 EPHB1 rs1515366, rs1515367 2047 3q21-q23 Ephrin receptor EphB1 precursor 
9 FLJ31810 rs1021447, rs1343456 158038 9p21.1  
10 FLJ34278 rs1316607 283470 12q13.12  
11 FLJ34922 rs938298 91607 17q21.1  
12 GALNT13 rs707077 114805 2q24.1 UDP-N-acetyl-α-d-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 
13 GASC1 rs1340513 23081 9p24 Gene amplified in squamous cell carcinoma 1 
14 GPR158 rs1414045 57512 10p12.31 G protein–coupled receptor 158 
15 GRIN3A rs942142 116443 9q31.1 Glutamate receptor, ionotropic, N-methyl-d-aspartate 3A 
16 KIAA0802 rs2143267 23255 18p11.22  
17 KIAA1632 rs1075906 57724 18q21.1  
18 LOC374416 rs536215    
19 LOC374699 rs727187    
20 LOC376905 rs1824305, rs1824306    
21 LOC377255 rs38055    
22 MYH3 rs876660    
  rs876658 4621 17p13.1 Myosin, heavy polypeptide 3, skeletal muscle, embryonic 
23 PACSIN1 rs3845765, rs3800472 29993 6p21.3 Protein kinase C and casein kinase substrate in neurons 1 
24 PGRP-L rs959117 114770 19q13.2 Peptidoglycan recognition protein L precursor 
25 PIK3C3 rs52911 5289 18q12.3 Phosphoinositide-3-kinase, class 3 
26 PKP4 rs2108217 8502 2q23-q31 Plakophilin 4 
27 PLCB1 rs2143267, rs2889786 23236 20p12 Phosphoinositide-specific phospholipase Cβ1 isoform b 
28 RAMP rs2014029 51514  RA-regulated nuclear matrix-associated protein 
29 SGCD rs256846 6444 5q33-q34 δ-Sarcoglycan isoform 2 
30 SLC9A9 rs956062 285195 3q23 Solute carrier family 9 
31 SYNE1 rs725467 23345 6q25 Nesprin 1 isoform α 
32 UBE2E2 rs778480 7325 3p24.2 Ubiquitin-conjugating enzyme E2E 2 
33 XDH rs206847 7498 2p23-p22 Xanthine dehydrogenase 
No.GeneSNPLocuslinkCytobandDescription
1 ABCA4 rs546550 24 1p22.1-p21 ATP-binding cassette, subfamily A member 4 
2 ACYP2 rs2010461 98 2p16.2 Muscle-type acylphosphatase 2 
3 AKAP2 rs723706 11217 9q31-q33 A-kinase anchor protein 2 isoform 2 
4 ALS2CR12 rs1406121 130540 2q33.2 ALS2CR12 gene product 
5 C13orf18 rs1408195 80183 13q14.11 Chromosome 13 open reading frame 18 
6 DNAH8 rs2050180 1769 6p21.31-p21.1 Dynein, axonemal, heavy polypeptide 8 
7 EFA6R rs1565138 23362 8p23.3 ADP-ribosylation factor guanine nucleotide factor 6 
8 EPHB1 rs1515366, rs1515367 2047 3q21-q23 Ephrin receptor EphB1 precursor 
9 FLJ31810 rs1021447, rs1343456 158038 9p21.1  
10 FLJ34278 rs1316607 283470 12q13.12  
11 FLJ34922 rs938298 91607 17q21.1  
12 GALNT13 rs707077 114805 2q24.1 UDP-N-acetyl-α-d-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 
13 GASC1 rs1340513 23081 9p24 Gene amplified in squamous cell carcinoma 1 
14 GPR158 rs1414045 57512 10p12.31 G protein–coupled receptor 158 
15 GRIN3A rs942142 116443 9q31.1 Glutamate receptor, ionotropic, N-methyl-d-aspartate 3A 
16 KIAA0802 rs2143267 23255 18p11.22  
17 KIAA1632 rs1075906 57724 18q21.1  
18 LOC374416 rs536215    
19 LOC374699 rs727187    
20 LOC376905 rs1824305, rs1824306    
21 LOC377255 rs38055    
22 MYH3 rs876660    
  rs876658 4621 17p13.1 Myosin, heavy polypeptide 3, skeletal muscle, embryonic 
23 PACSIN1 rs3845765, rs3800472 29993 6p21.3 Protein kinase C and casein kinase substrate in neurons 1 
24 PGRP-L rs959117 114770 19q13.2 Peptidoglycan recognition protein L precursor 
25 PIK3C3 rs52911 5289 18q12.3 Phosphoinositide-3-kinase, class 3 
26 PKP4 rs2108217 8502 2q23-q31 Plakophilin 4 
27 PLCB1 rs2143267, rs2889786 23236 20p12 Phosphoinositide-specific phospholipase Cβ1 isoform b 
28 RAMP rs2014029 51514  RA-regulated nuclear matrix-associated protein 
29 SGCD rs256846 6444 5q33-q34 δ-Sarcoglycan isoform 2 
30 SLC9A9 rs956062 285195 3q23 Solute carrier family 9 
31 SYNE1 rs725467 23345 6q25 Nesprin 1 isoform α 
32 UBE2E2 rs778480 7325 3p24.2 Ubiquitin-conjugating enzyme E2E 2 
33 XDH rs206847 7498 2p23-p22 Xanthine dehydrogenase 
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