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Table 2

Comparison of the data obtained by real-time RT-PCR and GeneChip analyses

ClusterGene nameDMBA-induced carcinomasPhIP-induced carcinomas
DMBA397DMBA341DMBA352DMBA334PhIP7-4PhIP16-2PhIP14-3
RT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChip
A1 Expressed sequence tag, unknown (Rn.37805) −1.4 −2.3 −4.3 −5.6 −1.7 −4.1 −2.7 −5.9 1.3 1.7 1.4 1.4 1.4 2.6 
 Heat-shock Mr 60,000 protein 1 −3.7 −2.3 −5.0 −2.1 −2.1 −2.0 −3.8 −2.9 −1.6 1.5 −1.9 1.3 1.3 1.4 
A2 Ribosomal protein S6 1.3 −1.1 −1.4 −1.3 1.7 −1.2 1.8 −1.3 −1.2 1.6 1.0 1.3 −1.1 1.2 
 Heat-shock Mr 10,000 protein −2.9 −1.7 −4.0 −1.7 −1.4 −1.5 −1.7 −2.1 2.1 1.9 1.1 1.3 2.8 2.3 
Heme oxygenase −13.5 −6.0 −23.3 −13.6 −13.6 −9.7 −17.2 −21.2 −23.0 −13.1 −149.4 −44.8 −54.1 −8.8 
 Intercellular adhesion molecule 1 −6.4 −9.9 −20.6 −12.2 −14.9 −20.9 −14.3 −14.4 −19.5 −8.0 −25.7 −7.8 −34.8 −10.6 
 Tissue inhibitor of metalloproteinase-1 −34.2 −6.5 −75.2 −10.0 −67.4 −14.0 −35.5 −11.2 −13.1 −5.1 −68.2 −29.2 −12.5 −4.7 
C1 Solute carrier family 7 1.7 1.3 3.6 2.2 2.6 1.5 −1.4 1.1 −2.0 −2.0 −4.0 −2.3 −1.9 −3.5 
C2 Glutathione S-transferase π 2.8 1.6 −1.1 1.3 3.2 1.2 4.4 2.1 −1.3 −1.0 −1.6 −1.2 −2.5 −2.1 
C3 Claudin 3 58.1 16.0 18.4 50.1 74.1 12.8 66.0 10.6 −5.0 −3.2 −2.1 −1.4 −1.3 −9.8 
Cyclin D1 75.7 10.4 29.1 23.8 62.4 16.0 22.4 23.3 5.9 3.0 25.9 15.4 13.1 13.6 
 Stearoyl-CoA desaturase 2 38.5 10.8 32.1 12.0 62.0 10.9 39.0 7.9 31.5 5.7 15.5 22.9 27.2 31.6 
ClusterGene nameDMBA-induced carcinomasPhIP-induced carcinomas
DMBA397DMBA341DMBA352DMBA334PhIP7-4PhIP16-2PhIP14-3
RT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChipRT-PCRChip
A1 Expressed sequence tag, unknown (Rn.37805) −1.4 −2.3 −4.3 −5.6 −1.7 −4.1 −2.7 −5.9 1.3 1.7 1.4 1.4 1.4 2.6 
 Heat-shock Mr 60,000 protein 1 −3.7 −2.3 −5.0 −2.1 −2.1 −2.0 −3.8 −2.9 −1.6 1.5 −1.9 1.3 1.3 1.4 
A2 Ribosomal protein S6 1.3 −1.1 −1.4 −1.3 1.7 −1.2 1.8 −1.3 −1.2 1.6 1.0 1.3 −1.1 1.2 
 Heat-shock Mr 10,000 protein −2.9 −1.7 −4.0 −1.7 −1.4 −1.5 −1.7 −2.1 2.1 1.9 1.1 1.3 2.8 2.3 
Heme oxygenase −13.5 −6.0 −23.3 −13.6 −13.6 −9.7 −17.2 −21.2 −23.0 −13.1 −149.4 −44.8 −54.1 −8.8 
 Intercellular adhesion molecule 1 −6.4 −9.9 −20.6 −12.2 −14.9 −20.9 −14.3 −14.4 −19.5 −8.0 −25.7 −7.8 −34.8 −10.6 
 Tissue inhibitor of metalloproteinase-1 −34.2 −6.5 −75.2 −10.0 −67.4 −14.0 −35.5 −11.2 −13.1 −5.1 −68.2 −29.2 −12.5 −4.7 
C1 Solute carrier family 7 1.7 1.3 3.6 2.2 2.6 1.5 −1.4 1.1 −2.0 −2.0 −4.0 −2.3 −1.9 −3.5 
C2 Glutathione S-transferase π 2.8 1.6 −1.1 1.3 3.2 1.2 4.4 2.1 −1.3 −1.0 −1.6 −1.2 −2.5 −2.1 
C3 Claudin 3 58.1 16.0 18.4 50.1 74.1 12.8 66.0 10.6 −5.0 −3.2 −2.1 −1.4 −1.3 −9.8 
Cyclin D1 75.7 10.4 29.1 23.8 62.4 16.0 22.4 23.3 5.9 3.0 25.9 15.4 13.1 13.6 
 Stearoyl-CoA desaturase 2 38.5 10.8 32.1 12.0 62.0 10.9 39.0 7.9 31.5 5.7 15.5 22.9 27.2 31.6 
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