| SNP . | Location . | Allele . | PHWE for cases . | PHWE for controls . | Call rate (%) . |
|---|---|---|---|---|---|
| rs502396 | 649236, intron 1 | C>T | 0.12 | 0.90 | 99.9 |
| rs2244500 | 651005, intron 2 | C>T | 0.04 | 0.37 | 100.0 |
| rs3786362 | 652247, exon 3, synonymous | C>T | 0.89 | 0.85 | 99.6 |
| rs2853532 | 660414, intron 4 | C>T | 0.08 | 0.52 | 99.9 |
| rs3744962 | 664320, flanking | C>T | 0.18 | 0.19 | 99.9 |
| rs11081251 | 664440, flanking | A>C | 0.05 | 0.83 | 100.0 |
| rs9948583 | 665000, flanking | C>T | 0.16 | 0.99 | 99.8 |
| rs3819102 | 665307, flanking | C>T | 0.29 | 0.17 | 99.8 |
| rs10502289 | 666789, flanking | A>T | 0.61 | 0.80 | 99.7 |
| rs2298583 | 667302, flanking | C>T | 0.59 | 0.89 | 99.9 |
| rs2298581 | 667931, flanking | C>G | 0.78 | 0.63 | 99.8 |
| SNP . | Location . | Allele . | PHWE for cases . | PHWE for controls . | Call rate (%) . |
|---|---|---|---|---|---|
| rs502396 | 649236, intron 1 | C>T | 0.12 | 0.90 | 99.9 |
| rs2244500 | 651005, intron 2 | C>T | 0.04 | 0.37 | 100.0 |
| rs3786362 | 652247, exon 3, synonymous | C>T | 0.89 | 0.85 | 99.6 |
| rs2853532 | 660414, intron 4 | C>T | 0.08 | 0.52 | 99.9 |
| rs3744962 | 664320, flanking | C>T | 0.18 | 0.19 | 99.9 |
| rs11081251 | 664440, flanking | A>C | 0.05 | 0.83 | 100.0 |
| rs9948583 | 665000, flanking | C>T | 0.16 | 0.99 | 99.8 |
| rs3819102 | 665307, flanking | C>T | 0.29 | 0.17 | 99.8 |
| rs10502289 | 666789, flanking | A>T | 0.61 | 0.80 | 99.7 |
| rs2298583 | 667302, flanking | C>T | 0.59 | 0.89 | 99.9 |
| rs2298581 | 667931, flanking | C>G | 0.78 | 0.63 | 99.8 |
Location version: National Center for Biotechnology Information Build 36. Alleles in bold are minor alleles. HWE, Hardy-Weinberg equilibrium.