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Poster Presentations - Genomic Profiling of Tumors
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Journal Articles

Abstract LB195: Characterisation of RNF144B and PPP2R2A identified by a novel approach using TCGA data in ovarian cancer

Pacharla Manasa, Chirukandath Sidhanth, Syama Krishnapriya, Kanchan Murhekar, Trivadi S. Ganesan
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): LB195.
DOI: https://doi.org/10.1158/1538-7445.AM2021-LB195
Published: 01 July 2021
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Abstract LB197: An SU2C-Mark Foundation Lung collaborative update: integrative genomics identifies distinct transcriptional states associated with checkpoint blockade resistance

Monica B. Arniella, Arvind Ravi, Justin Gainor, Chip Stewart, Sam Freeman, Mark Awad, Patrick Forde, Valsamo Anagnostou, Brian Henick, Jonathan W. Riess, Don Gibbons, Nathan Pennell, Vamsidhar Velcheti, Ignaty Leshchiner, Jaegil Kim, Subba Digumarthy, Mari Mino-Kenudson, John Heymach, Nir Hacohen, Naiyer Rizvi, Roy Herbst, Victor E. Velculescu, Julie Brahmer, Kurt Schalper, Pasi Jänne, Jedd Wolchok, Alice Shaw, Gad Getz, Matthew D. Hellman
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): LB197.
DOI: https://doi.org/10.1158/1538-7445.AM2021-LB197
Published: 01 July 2021
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Abstract LB196: Comparison of whole exome sequencing and targeted sequencing in patients with advanced bladder cancer

Neal Shiv Chawla, Zeynep Zengin, Ameish Govindarajan, Sumanta K. Pal
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): LB196.
DOI: https://doi.org/10.1158/1538-7445.AM2021-LB196
Published: 01 July 2021
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Abstract 2188: Urothelial cancer-GENOmic analysis to improve patient outcomes and research (UC-GENOME): a bladder cancer advocacy network (BCAN) led collaborative research study

Jeffrey S. Damrauer, Jeff Klomp, Wolfgang Beck, Mi Zhou, Elizabeth Plimack, Matthew Galsky, Petros Grivas, Noah Hahn, Peter O'Donnell, Gopa Iyer, David I. Quinn, Katherine A. Hoadley, William Y. Kim, Matthew I. Milowsky
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2188.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2188
Published: 01 July 2021
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Journal Articles

Abstract 2187: Circulating tumor DNA (ctDNA) gene sequencing results from prospective screening of patients with newly diagnosed metastatic gastric and gastroesophageal adenocarcinoma (GEA) for the bemarituzumab FIGHT randomized trial using a plasma NGS assay

Daniel Catenacci, Yoon-Koo Kang, Peter Enzinger, Giovanni G. Cardellino, Raquel Guardeno Sanchez, Aaron Q. Xu, Allie Tappe, Michelle Y. Sun, Siddhartha Mitra, Derek Murphy, Ian Misner, Steven Smith, Zev Wainberg
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2187.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2187
Published: 01 July 2021
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Abstract 2199: Identifying genomic heterogeneity at single-cell resolution in endometrial cancer

Enrique I. Velazquez Villarreal, Lee D. Gibbs, Dana Mahinbakht, Diane M. Da Silva, Lynda D. Roman, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2199.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2199
Published: 01 July 2021
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Abstract 2198: Allelic phasing of genomic alterations through linked read whole genome sequencing in human prostate cancer cell lines

Minh-Tam Pham, Harshath Gupta, Anuj Gupta, Ajay Vaghasia, Alyza M. Skaist, McKinzie A. Garrison, Roshan Chikamarne, Sarah J. Wheelan, William G. Nelson, Srinivasan Yegnasubramanian
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2198.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2198
Published: 01 July 2021
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Abstract 2197: Dysregulated alternative splicing landscape identifies intron retention as a hallmark and spliceosome as a therapeutic vulnerability in aggressive prostate cancer

Dingxiao Zhang, qiang Hu, Xiaozhuo Liu, Yibing Ji, Hsueh-Ping Chao, Amanda Tracz, Jason Kirk, Silvia Buonamici, Ping Zhu, Jianmin Wang, song liu, Dean Tang
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2197.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2197
Published: 01 July 2021
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Abstract 2196: Prostate cancer: Immune-inflammation signature in men of African ancestry

Isra A. Elhussin, Jason A. White, Tamaro S. Hudson, Moray J. Campbell, Chanita Hughes-Halbert, Stefan Ambs, Clayton Yates
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2196.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2196
Published: 01 July 2021
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Abstract 2171: Brain cancer map: A neural network-based clustering of brain cancer samples based on genome-wide CNV and LOH patterns

Megan Roytman, Soheil Shams
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2171.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2171
Published: 01 July 2021
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Abstract 2170: Proteogenomic and metabolomic characterization of human glioblastoma

Liang-Bo Wang, Alla Karpova, Marina A. Gritsenko, Jennifer E. Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph Rothstein, Runyu Hong, Vasileios Stathias, MacIntosh Cornwell, Francesca Petralia, Richard D. Smith, Antonio Iavarone, Milan G. Chheda, Jill S. Barnholtz-Sloan, Karin D. Rodland, Tao Liu, Li Ding, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2170.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2170
Published: 01 July 2021
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Abstract 2169: Tumor-myeloid cell interactions are dynamic and influence the evolutionary trajectory of adult diffuse glioma

Frederick S. Varn, Kevin C. Johnson, Floris P. Barthel, Hoon Kim, Taylor Wade, Disha Lodha, Shoaib Ajaib, Nazia Ahmed, Luciano Garofano, Fulvio D'Angelo, Lucy Stead, Houtan Noushmehr, Antonio Iavarone, Roel Verhaak, The GLASS Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2169.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2169
Published: 01 July 2021
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Abstract 2177: Tumor neoantigen profiling with validated patient-specific TCR characterization to improve neoepitope prediction

Zheng Pan, Olivier Dalmas, Songming Peng, Kyle Jacoby, Barbara Sennino, Yan Ma, Chad Smith, Amin Momin, Allison Xu, Katharine Heeringa, Jonathan Johnston, Duo An, Boi Quach, William Lu, Diana Nguyen, Andrew Conroy, Bhamini Purandare, Eva Huang, Eric Stawiski, Alex Franzusoff, Stefanie Mandl
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2177.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2177
Published: 01 July 2021
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Abstract 2176: Mutational profiling of premalignant breast microbiopsies

Daniela Nachmanson, Mark F. Evans, Joseph Steward, Adam Officer, Huazhen Yao, Thomas J. O'Keefe, Farnaz Hasteh, Gary S. Stein, Kristen Jepsen, Donald L. Weaver, Gillian L. Hirst, Brian L. Sprague, Laura J. Esserman, Alexander Borowsky, Janet L. Stein, Olivier Harismendy
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2176.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2176
Published: 01 July 2021
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Abstract 2191: Clear cell renal cell carcinoma molecular differences between Hispanic Americans and European Americans

Yuliang Chen, Karleen M. Meiklejohn, Nathan Ellis, Erika R. Bracamonte, Benjamin R. Lee, Ken Batai
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2191.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2191
Published: 01 July 2021
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Abstract 2190: Integrative genomic and transcriptomic characterization of metastatic urothelial carcinoma

Maud Rijnders, J Alberto Nakauma-González, Job van Riet, Michiel S. van der Heijden, Jens Voortman, Edwin P. J. G Cuppen, Niven Mehra, Sandra van Wilpe, Sjoukje F. Oosting, L Lucia Rijstenberg, Ellen C. Zwarthoff, Ronald de Wit, Astrid A. van der Veldt, Harmen J. van de Werken, Martijn P. Lolkema, Joost L. Boormans
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2190.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2190
Published: 01 July 2021
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Abstract 2166: The prevalence and molecular characteristics of EGFRlarge fragment deletion in Asian cancer population by comprehensive genome profiling

Ruoying Yu, Qiuxiang Ou, Hua Bao, Xue Wu, Yang Shao
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2166.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2166
Published: 01 July 2021
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Abstract 2175: Identification of Somatic BRCA1/2 mutation profile in tissue-based and liquid biopsy-based next generation sequencing in Egyptian patients with breast cancer

Mai M. Lotfy, Amira Salah El-Din Youssef, Auhood Nassar, Mahmoud Kamel, Zeinab K. Hassan, Amany Abd-Elhameed Abou-Bakr, Ahmed Farahat, Mohamed M. Gomaa, Abdel Rahman N. Zekri
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2175.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2175
Published: 01 July 2021
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Abstract 2174: The genomic and anti-tumor immune evolution of breast cancer

Juan Blanco-Heredia, Carla Anjos Souza, Samuel Gonçalves-Ribeiro, Maria Gonzalez-Cao, Maurizio Callari, Francesc Tresserra, Rafael Rossell, Carlos Caldas, Leticia De Mattos-Arruda
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2174.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2174
Published: 01 July 2021
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Abstract 2179: Identification of ROS1 alterations in ctDNA from colorectal cancer patients in China

Mojin Wang, Lili Zhu, Depei Huang, Xudong Shen, Hushan Zhang, Xueke She
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2179.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2179
Published: 01 July 2021
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