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Journal Articles

Christopher D.M. Fletcher, MD, FRCPath: In Memoriam

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Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2025) 23 (1): 7.
https://doi.org/10.1158/1541-7786.MCR-24-1038
Published: 02 January 2025
View articletitled, Christopher D.M. Fletcher, MD, FRCPath: In Memoriam
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Journal Articles

Expanding Our Horizon to Inform Cutting Edge Mechanistic Studies: Cancer Research Resources

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Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2024) 22 (11): 995.
https://doi.org/10.1158/1541-7786.MCR-24-0884
Published: 01 November 2024
View articletitled, Expanding Our Horizon to Inform Cutting Edge Mechanistic Studies: Cancer Research Resources
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Journal Articles

Semi-Supervised, Attention-Based Deep Learning for Predicting TMPRSS2:ERG Fusion Status in Prostate Cancer Using Whole Slide Images

Open Access
Mohamed Omar, Zhuoran Xu, Sophie B. Rand, Mohammad K. Alexanderani, Daniela C. Salles, Itzel Valencia, Edward M. Schaeffer, Brian D. Robinson, Tamara L. Lotan, Massimo Loda, Luigi Marchionni
Journal: Molecular Cancer Research
Mol Cancer Res (2024) 22 (4): 347–359.
https://doi.org/10.1158/1541-7786.MCR-23-0639
Published: 02 April 2024
View articletitled, Semi-Supervised, Attention-Based Deep Learning for Predicting TMPRSS2:ERG Fusion Status in Prostate Cancer Using Whole Slide Images
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Includes: Supplementary data
Journal Articles

The Prostate Stromal Transcriptome in Aggressive and Lethal Prostate Cancer

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Chaoran Ma, Yinglu Zhou, Giuseppe Nicolò Fanelli, Konrad H. Stopsack, Michelangelo Fiorentino, Giorgia Zadra, Lorelei A. Mucci, Massimo Loda, Svitlana Tyekucheva, Kathryn L. Penney
Journal: Molecular Cancer Research
Mol Cancer Res (2023) 21 (3): 253–260.
https://doi.org/10.1158/1541-7786.MCR-22-0627
Published: 01 March 2023
View articletitled, The Prostate Stromal Transcriptome in Aggressive and Lethal Prostate Cancer
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Includes: Supplementary data
Journal Articles

Transcriptomes of Prostate Cancer with TMPRSS2:ERG and Other ETS Fusions

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Konrad H. Stopsack, Xiaofeng A. Su, J. Bailey Vaselkiv, Rebecca E. Graff, Ericka M. Ebot, Andreas Pettersson, Rosina T. Lis, Michelangelo Fiorentino, Massimo Loda, Kathryn L. Penney, Tamara L. Lotan, Lorelei A. Mucci
Journal: Molecular Cancer Research
Mol Cancer Res (2023) 21 (1): 14–23.
https://doi.org/10.1158/1541-7786.MCR-22-0446
Published: 03 January 2023
View articletitled, Transcriptomes of Prostate Cancer with TMPRSS2:ERG and Other ETS Fusions
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Includes: Supplementary data
Journal Articles

The AACR Journals: Advancing Progress Toward the AACR's 115-Year Mission

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Kenneth C. Anderson, Lewis C. Cantley, Riccardo Dalla-Favera, Chi Van Dang, Luis A. Diaz, Raymond N. DuBois, Keith T. Flaherty, Philip D. Greenberg, Massimo Loda, Elaine R. Mardis, Elizabeth A. Platz, Michael N. Pollak, Robert D. Schreiber, Lillian L. Siu, Beverly A. Teicher
Journal: Molecular Cancer Research
Mol Cancer Res (2022) 20 (11): 1591–1597.
https://doi.org/10.1158/1541-7786.MCR-22-0804
Published: 03 November 2022
View articletitled, The AACR Journals: Advancing Progress Toward the AACR's 115-Year Mission
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Journal Articles

Blocking PI3K p110β Attenuates Development of PTEN-Deficient Castration-Resistant Prostate Cancer

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Xueliang Gao, Yubao Wang, Caroline F. Ribeiro, Cherubin Manokaran, Hyeyoun Chang, Thanh Von, Silvia Rodrigues, Onur Cizmecioglu, Shidong Jia, Manav Korpal, Joshua M. Korn, Zhigang Wang, Fabienne Schmit, Lan Jiang, Raymond Pagliarini, Yi Yang, Isha Sethi, Sabina Signoretti, Guo-Cheng Yuan, Massimo Loda, Jean J. Zhao, Thomas M. Roberts
Journal: Molecular Cancer Research
Mol Cancer Res (2022) 20 (5): 673–685.
https://doi.org/10.1158/1541-7786.MCR-21-0322
Published: 04 May 2022
View articletitled, Blocking PI3K p110β Attenuates Development of PTEN-Deficient Castration-Resistant Prostate Cancer
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Includes: Supplementary data
Journal Articles

Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology

Open Access
Jacob Rosenthal, Ryan Carelli, Mohamed Omar, David Brundage, Ella Halbert, Jackson Nyman, Surya N. Hari, Eliezer M. Van Allen, Luigi Marchionni, Renato Umeton, Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2022) 20 (2): 202–206.
https://doi.org/10.1158/1541-7786.MCR-21-0665
Published: 01 February 2022
View articletitled, Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology
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Includes: Supplementary data
Journal Articles

O-GlcNAc Transferase – An Auxiliary Factor or a Full-blown Oncogene?

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Harri M. Itkonen, Massimo Loda, Ian G. Mills
Journal: Molecular Cancer Research
Mol Cancer Res (2021) 19 (4): 555–564.
https://doi.org/10.1158/1541-7786.MCR-20-0926
Published: 01 April 2021
View articletitled, O-GlcNAc Transferase – An Auxiliary Factor or a Full-blown Oncogene?
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Includes: Supplementary data
Journal Articles

Metabolomics of Prostate Cancer Gleason Score in Tumor Tissue and Serum

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Kathryn L. Penney, Svitlana Tyekucheva, Jacob Rosenthal, Habiba El Fandy, Ryan Carelli, Stephanie Borgstein, Giorgia Zadra, Giuseppe Nicolò Fanelli, Lavinia Stefanizzi, Francesca Giunchi, Mark Pomerantz, Samuel Peisch, Hannah Coulson, Rosina Lis, Adam S. Kibel, Michelangelo Fiorentino, Renato Umeton, Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2021) 19 (3): 475–484.
https://doi.org/10.1158/1541-7786.MCR-20-0548
Published: 01 March 2021
View articletitled, Metabolomics of Prostate Cancer Gleason Score in Tumor Tissue and Serum
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Includes: Supplementary data
Journal Articles

Abstract B31: Single-cell multiplex immunofluorescence of formalin-fixed, paraffin-embedded prostate cancer tissue identifies PI3K pathway activation in two prospective cohort studies

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Konrad H. Stopsack, Ying Huang, Svitlana Tyekucheva, Travis A. Gerke, Clyde Bango, Habiba Elfandy, Xueliang Gao, Zhenying Cai, Thomas M. Roberts, Philip W. Kantoff, Lorelei A. Mucci, Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2020) 18 (10_Supplement): B31.
https://doi.org/10.1158/1557-3125.PI3K-mTOR18-B31
Published: 02 October 2020
View articletitled, Abstract B31: Single-cell multiplex immunofluorescence of formalin-fixed, paraffin-embedded prostate cancer tissue identifies PI3K pathway activation in two prospective cohort studies
Journal Articles

Inhibition of O-GlcNAc Transferase Renders Prostate Cancer Cells Dependent on CDK9

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Harri M. Itkonen, Ninu Poulose, Rebecca E. Steele, Sara E.S. Martin, Zebulon G. Levine, Damien Y. Duveau, Ryan Carelli, Reema Singh, Alfonso Urbanucci, Massimo Loda, Craig J. Thomas, Ian G. Mills, Suzanne Walker
Journal: Molecular Cancer Research
Mol Cancer Res (2020) 18 (10): 1512–1521.
https://doi.org/10.1158/1541-7786.MCR-20-0339
Published: 02 October 2020
View articletitled, Inhibition of O-GlcNAc Transferase Renders Prostate Cancer Cells Dependent on CDK9
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Includes: Supplementary data
Journal Articles

Molecular Characterization of Prostate Cancer with Associated Gleason Score Using Mass Spectrometry Imaging

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Elizabeth C. Randall, Giorgia Zadra, Paolo Chetta, Begona G.C. Lopez, Sudeepa Syamala, Sankha S. Basu, Jeffrey N. Agar, Massimo Loda, Clare M. Tempany, Fiona M. Fennessy, Nathalie Y.R. Agar
Journal: Molecular Cancer Research
Mol Cancer Res (2019) 17 (5): 1155–1165.
https://doi.org/10.1158/1541-7786.MCR-18-1057
Published: 01 May 2019
View articletitled, Molecular Characterization of Prostate Cancer with Associated Gleason Score Using Mass Spectrometry Imaging
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Includes: Supplementary data
Journal Articles

Genetic and Epigenetic Determinants of Aggressiveness in Cribriform Carcinoma of the Prostate

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Habiba Elfandy, Joshua Armenia, Filippo Pederzoli, Eli Pullman, Nelma Pertega-Gomes, Nikolaus Schultz, Kartik Viswanathan, Aram Vosoughi, Mirjam Blattner, Konrad H. Stopsack, Giorgia Zadra, Kathryn L. Penney, Juan Miguel Mosquera, Svitlana Tyekucheva, Lorelei A. Mucci, Christopher Barbieri, Massimo Loda
Journal: Molecular Cancer Research
Series: Author Choice
Mol Cancer Res (2019) 17 (2): 446–456.
https://doi.org/10.1158/1541-7786.MCR-18-0440
Published: 01 February 2019
View articletitled, Genetic and Epigenetic Determinants of Aggressiveness in Cribriform Carcinoma of the Prostate
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Includes: Supplementary data
Journal Articles

Metabolic Profiling in Formalin-Fixed and Paraffin-Embedded Prostate Cancer Tissues

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Stefano Cacciatore, Giorgia Zadra, Clyde Bango, Kathryn L. Penney, Svitlana Tyekucheva, Oscar Yanes, Massimo Loda
Journal: Molecular Cancer Research
Series: Author Choice
Mol Cancer Res (2017) 15 (4): 439–447.
https://doi.org/10.1158/1541-7786.MCR-16-0262
Published: 02 April 2017
View articletitled, Metabolic Profiling in Formalin-Fixed and Paraffin-Embedded Prostate Cancer Tissues
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Includes: Supplementary data
Journal Articles

Pathology-Driven Comprehensive Proteomic Profiling of the Prostate Cancer Tumor Microenvironment

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Lisa Staunton, Claire Tonry, Rosina Lis, Virginia Espina, Lance Liotta, Rosanna Inzitari, Michaela Bowden, Aurelie Fabre, John O'Leary, Stephen P. Finn, Massimo Loda, Stephen R. Pennington
Journal: Molecular Cancer Research
Mol Cancer Res (2017) 15 (3): 281–293.
https://doi.org/10.1158/1541-7786.MCR-16-0358
Published: 28 February 2017
View articletitled, Pathology-Driven Comprehensive Proteomic Profiling of the Prostate Cancer Tumor Microenvironment
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Includes: Supplementary data
Journal Articles

Abstract A25: Tumor metabolism as a driver of lethal prostate cancer

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Rachel S. Kelly, Jennifer A. Sinnott, Jennifer R. Rider, Ericka Ebot, Travis Gerke, Kathryn L. Penney, Michaela Bowden, Andreas Pettersson, Massimo Loda, Meir Stampfer, Philip Kantoff, Neil E. Martin, Edward L. Giovannucci, Svitlana Tyekucheva, Matthew Vander Heiden, Lorelei A. Mucci
Journal: Molecular Cancer Research
Mol Cancer Res (2016) 14 (1_Supplement): A25.
https://doi.org/10.1158/1557-3125.METCA15-A25
Published: 01 January 2016
View articletitled, Abstract A25: Tumor metabolism as a driver of lethal prostate cancer
Journal Articles

Abstract B67: Identifying obesity-linked gene expression changes in prostate cancer

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Ericka M. Ebot, Travis Gerke, Svitlana Tyekucheva, David P. Labbé, Giorgia Zadra, Rachel S. Kelly, Michaela Bowden, Jennifer R. Rider, M Kathryn Wilson, Neil E. Martin, Myles Brown, Matthew G. Vander Heiden, Edward L. Giovannucci, Massimo Loda, Lorelei A. Mucci
Journal: Molecular Cancer Research
Mol Cancer Res (2016) 14 (1_Supplement): B67.
https://doi.org/10.1158/1557-3125.METCA15-B67
Published: 01 January 2016
View articletitled, Abstract B67: Identifying obesity-linked gene expression changes in prostate cancer
Journal Articles

Measuring PI3K Activation: Clinicopathologic, Immunohistochemical, and RNA Expression Analysis in Prostate Cancer

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Neil E. Martin, Travis Gerke, Jennifer A. Sinnott, Edward C. Stack, Ove Andrén, Swen-Olof Andersson, Jan-Erik Johansson, Michelangelo Fiorentino, Stephen Finn, Giuseppe Fedele, Meir Stampfer, Philip W. Kantoff, Lorelei A. Mucci, Massimo Loda
Journal: Molecular Cancer Research
Mol Cancer Res (2015) 13 (10): 1431–1440.
https://doi.org/10.1158/1541-7786.MCR-14-0569
Published: 01 October 2015
View articletitled, Measuring PI3K Activation: Clinicopathologic, Immunohistochemical, and RNA Expression Analysis in Prostate Cancer
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Journal Articles

Dissecting the Dual Role of AMPK in Cancer: From Experimental to Human Studies

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Giorgia Zadra, Julie L. Batista, Massimo Loda
Journal: Molecular Cancer Research
Series: Author Choice
Mol Cancer Res (2015) 13 (7): 1059–1072.
https://doi.org/10.1158/1541-7786.MCR-15-0068
Published: 13 July 2015
View articletitled, Dissecting the Dual Role of AMPK in Cancer: From Experimental to Human Studies
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