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Journal Articles

Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

Jennifer Borowsky, Koichiro Haruki, Mai Chan Lau, Andressa Dias Costa, Juha P. Väyrynen, Tomotaka Ugai, Kota Arima, Annacarolina da Silva, Kristen D. Felt, Melissa Zhao, Carino Gurjao, Tyler S. Twombly, Kenji Fujiyoshi, Sara A. Väyrynen, Tsuyoshi Hamada, Kosuke Mima, Susan Bullman, Tabitha A. Harrison, Amanda I. Phipps, Ulrike Peters, Kimmie Ng, Jeffrey A. Meyerhardt, Mingyang Song, Edward L. Giovannucci, Kana Wu, Xuehong Zhang, Gordon J. Freeman, Curtis Huttenhower, Wendy S. Garrett, Andrew T. Chan, Barbara A. Leggett, Vicki L.J. Whitehall, Neal Walker, Ian Brown, Mark Bettington, Reiko Nishihara, Charles S. Fuchs, Jochen K. Lennerz, Marios Giannakis, Jonathan A. Nowak, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (10): 2816–2826.
https://doi.org/10.1158/1078-0432.CCR-20-4009
Published: 15 May 2021
View article titled, Association of <em>Fusobacterium nucleatum</em> with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment
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Includes: Supplementary data
Journal Articles

Composition, Spatial Characteristics, and Prognostic Significance of Myeloid Cell Infiltration in Pancreatic Cancer

Sara A. Väyrynen, Jinming Zhang, Chen Yuan, Juha P. Väyrynen, Andressa Dias Costa, Hannah Williams, Vicente Morales-Oyarvide, Mai Chan Lau, Douglas A. Rubinson, Richard F. Dunne, Margaret M. Kozak, Wenjia Wang, Diana Agostini-Vulaj, Michael G. Drage, Lauren Brais, Emma Reilly, Osama Rahma, Thomas Clancy, Jiping Wang, David C. Linehan, Andrew J. Aguirre, Charles S. Fuchs, Lisa M. Coussens, Daniel T. Chang, Albert C. Koong, Aram F. Hezel, Shuji Ogino, Jonathan A. Nowak, Brian M. Wolpin
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (4): 1069–1081.
https://doi.org/10.1158/1078-0432.CCR-20-3141
Published: 15 February 2021
View article titled, Composition, Spatial Characteristics, and Prognostic Significance of Myeloid Cell Infiltration in Pancreatic Cancer
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Includes: Supplementary data
Journal Articles

Prognostic Significance of Immune Cell Populations Identified by Machine Learning in Colorectal Cancer Using Routine Hematoxylin and Eosin–Stained Sections

Juha P. Väyrynen, Mai Chan Lau, Koichiro Haruki, Sara A. Väyrynen, Andressa Dias Costa, Jennifer Borowsky, Melissa Zhao, Kenji Fujiyoshi, Kota Arima, Tyler S. Twombly, Junko Kishikawa, Simeng Gu, Saina Aminmozaffari, Shanshan Shi, Yoshifumi Baba, Naohiko Akimoto, Tomotaka Ugai, Annacarolina Da Silva, Mingyang Song, Kana Wu, Andrew T. Chan, Reiko Nishihara, Charles S. Fuchs, Jeffrey A. Meyerhardt, Marios Giannakis, Shuji Ogino, Jonathan A. Nowak
Journal: Clinical Cancer Research
Clin Cancer Res (2020) 26 (16): 4326–4338.
https://doi.org/10.1158/1078-0432.CCR-20-0071
Published: 14 August 2020
View article titled, Prognostic Significance of Immune Cell Populations Identified by Machine Learning in Colorectal Cancer Using Routine Hematoxylin and Eosin–Stained Sections
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Includes: Supplementary data
Journal Articles

Calcium Intake and Survival after Colorectal Cancer Diagnosis

Wanshui Yang, Yanan Ma, Stephanie Smith-Warner, Mingyang Song, Kana Wu, Molin Wang, Andrew T. Chan, Shuji Ogino, Charles S. Fuchs, Vitaliy Poylin, Kimmie Ng, Jeffrey A. Meyerhardt, Edward L. Giovannucci, Xuehong Zhang
Journal: Clinical Cancer Research
Clin Cancer Res (2019) 25 (6): 1980–1988.
https://doi.org/10.1158/1078-0432.CCR-18-2965
Published: 15 March 2019
View article titled, Calcium Intake and Survival after Colorectal Cancer Diagnosis
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Includes: Supplementary data
Journal Articles

SMAD4 Loss in Colorectal Cancer Patients Correlates with Recurrence, Loss of Immune Infiltrate, and Chemoresistance

Isaac Wasserman, Lik Hang Lee, Shuji Ogino, Michael R. Marco, Chao Wu, Xi Chen, Jashodeep Datta, Eran Sadot, Bryan Szeglin, Jose G. Guillem, Philip B. Paty, Martin R. Weiser, Garrett M. Nash, Leonard Saltz, Afsar Barlas, Katia Manova-Todorova, Srijaya Prakash Babu Uppada, Arthur E. Elghouayel, Peter Ntiamoah, Jonathan N. Glickman, Tsuyoshi Hamada, Keisuke Kosumi, Kentaro Inamura, Andrew T. Chan, Reiko Nishihara, Andrea Cercek, Karuna Ganesh, Nancy E. Kemeny, Punita Dhawan, Rona Yaeger, Charles L. Sawyers, Julio Garcia-Aguilar, Marios Giannakis, Jinru Shia, J. Joshua Smith
Journal: Clinical Cancer Research
Clin Cancer Res (2019) 25 (6): 1948–1956.
https://doi.org/10.1158/1078-0432.CCR-18-1726
Published: 15 March 2019
View article titled, SMAD4 Loss in Colorectal Cancer Patients Correlates with Recurrence, Loss of Immune Infiltrate, and Chemoresistance
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Includes: Supplementary data
Journal Articles

PIK3CA Mutations Contribute to Acquired Cetuximab Resistance in Patients with Metastatic Colorectal Cancer

Jian-Ming Xu, Yan Wang, You-Liang Wang, Yan Wang, Tao Liu, Ming Ni, Man-Sheng Li, Li Lin, Fei-Jiao Ge, Chun Gong, Jun-Yan Gu, Ru Jia, He-Fei Wang, Yu-Ling Chen, Rong-Rui Liu, Chuan-Hua Zhao, Zhao-Li Tan, Yang Jin, Yun-Ping Zhu, Shuji Ogino, Zhi-Rong Qian
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2017) 23 (16): 4602–4616.
https://doi.org/10.1158/1078-0432.CCR-16-2738
Published: 14 August 2017
View article titled, <em>PIK3CA</em> Mutations Contribute to Acquired Cetuximab Resistance in Patients with Metastatic Colorectal Cancer
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Includes: Supplementary data
Journal Articles

MicroRNA MIR21 (miR-21) and PTGS2 Expression in Colorectal Cancer and Patient Survival

Kosuke Mima, Reiko Nishihara, Juhong Yang, Ruoxu Dou, Yohei Masugi, Yan Shi, Annacarolina da Silva, Yin Cao, Mingyang Song, Jonathan Nowak, Mancang Gu, Wanwan Li, Teppei Morikawa, Xuehong Zhang, Kana Wu, Hideo Baba, Edward L. Giovannucci, Jeffrey A. Meyerhardt, Andrew T. Chan, Charles S. Fuchs, Zhi Rong Qian, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2016) 22 (15): 3841–3848.
https://doi.org/10.1158/1078-0432.CCR-15-2173
Published: 31 July 2016
View article titled, MicroRNA <em>MIR21</em> (miR-21) and PTGS2 Expression in Colorectal Cancer and Patient Survival
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Includes: Supplementary data
Journal Articles

Prognostic Utility of Molecular Factors by Age at Diagnosis of Colorectal Cancer

Nadine J. McCleary, Kaori Sato, Reiko Nishihara, Kentaro Inamura, Teppei Morikawa, Xuehong Zhang, Kana Wu, Mai Yamauchi, Sun A. Kim, Yasutaka Sukawa, Kosuke Mima, Zhi Rong Qian, Charles S. Fuchs, Shuji Ogino, Jeffrey A. Meyerhardt
Journal: Clinical Cancer Research
Clin Cancer Res (2016) 22 (6): 1489–1498.
https://doi.org/10.1158/1078-0432.CCR-15-0946
Published: 14 March 2016
View article titled, Prognostic Utility of Molecular Factors by Age at Diagnosis of Colorectal Cancer
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Includes: Supplementary data
Journal Articles

Abstract PR2: Stroma-derived matrix metalloproteinase 9 (MMP9) confers resistance to anti-EGFR therapy through cell-extrinsic activation of ERBB2/ERK/JUN pathway

Janghee Woo, Morikawa Teppei, Shuji Ogino, Ramesh A. Shivdasani
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (10_Supplement): PR2.
https://doi.org/10.1158/1078-0432.MECHRES-PR2
Published: 04 March 2013
View article titled, Abstract PR2: Stroma-derived matrix metalloproteinase 9 (MMP9) confers resistance to anti-EGFR therapy through cell-extrinsic activation of ERBB2/ERK/JUN pathway
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Journal Articles

Expression Profiling of Archival Tumors for Long-term Health Studies

Levi Waldron, Shuji Ogino, Yujin Hoshida, Kaori Shima, Amy E. McCart Reed, Peter T. Simpson, Yoshifumi Baba, Katsuhiko Nosho, Nicola Segata, Ana Cristina Vargas, Margaret C. Cummings, Sunil R. Lakhani, Gregory J. Kirkner, Edward Giovannucci, John Quackenbush, Todd R. Golub, Charles S. Fuchs, Giovanni Parmigiani, Curtis Huttenhower
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (22): 6136–6146.
https://doi.org/10.1158/1078-0432.CCR-12-1915
Published: 14 November 2012
View article titled, Expression Profiling of Archival Tumors for Long-term Health Studies
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Includes: Supplementary data
Journal Articles

Specific Mutations in KRAS Codons 12 and 13, and Patient Prognosis in 1075 BRAF Wild-Type Colorectal Cancers

Yu Imamura, Teppei Morikawa, Xiaoyun Liao, Paul Lochhead, Aya Kuchiba, Mai Yamauchi, Zhi Rong Qian, Reiko Nishihara, Jeffrey A. Meyerhardt, Kevin M. Haigis, Charles S. Fuchs, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (17): 4753–4763.
https://doi.org/10.1158/1078-0432.CCR-11-3210
Published: 30 August 2012
View article titled, Specific Mutations in <em>KRAS</em> Codons 12 and 13, and Patient Prognosis in 1075 <em>BRAF</em> Wild-Type Colorectal Cancers
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Includes: Supplementary data
Journal Articles

Prognostic Role of PIK3CA Mutation in Colorectal Cancer: Cohort Study and Literature Review

Xiaoyun Liao, Teppei Morikawa, Paul Lochhead, Yu Imamura, Aya Kuchiba, Mai Yamauchi, Katsuhiko Nosho, Zhi Rong Qian, Reiko Nishihara, Jeffrey A. Meyerhardt, Charles S. Fuchs, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (8): 2257–2268.
https://doi.org/10.1158/1078-0432.CCR-11-2410
Published: 16 April 2012
View article titled, Prognostic Role of <em>PIK3CA</em> Mutation in Colorectal Cancer: Cohort Study and Literature Review
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Includes: Supplementary data
Journal Articles

Predictive and Prognostic Roles of BRAF Mutation in Stage III Colon Cancer: Results from Intergroup Trial CALGB 89803

Shuji Ogino, Kaori Shima, Jeffrey A. Meyerhardt, Nadine J. McCleary, Kimmie Ng, Donna Hollis, Leonard B. Saltz, Robert J. Mayer, Paul Schaefer, Renaud Whittom, Alexander Hantel, Al B. Benson, III, Donna Spiegelman, Richard M. Goldberg, Monica M. Bertagnolli, Charles S. Fuchs
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (3): 890–900.
https://doi.org/10.1158/1078-0432.CCR-11-2246
Published: 31 January 2012
View article titled, Predictive and Prognostic Roles of <em>BRAF</em> Mutation in Stage III Colon Cancer: Results from Intergroup Trial CALGB 89803
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Includes: Supplementary data
Journal Articles

STAT3 Expression, Molecular Features, Inflammation Patterns, and Prognosis in a Database of 724 Colorectal Cancers

Teppei Morikawa, Yoshifumi Baba, Mai Yamauchi, Aya Kuchiba, Katsuhiko Nosho, Kaori Shima, Noriko Tanaka, Curtis Huttenhower, David A. Frank, Charles S. Fuchs, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2011) 17 (6): 1452–1462.
https://doi.org/10.1158/1078-0432.CCR-10-2694
Published: 15 March 2011
View article titled, STAT3 Expression, Molecular Features, Inflammation Patterns, and Prognosis in a Database of 724 Colorectal Cancers
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Journal Articles

KRAS Mutation in Stage III Colon Cancer and Clinical Outcome Following Intergroup Trial CALGB 89803

Shuji Ogino, Jeffrey A. Meyerhardt, Natsumi Irahara, Donna Niedzwiecki, Donna Hollis, Leonard B. Saltz, Robert J. Mayer, Paul Schaefer, Renaud Whittom, Alexander Hantel, Al B. Benson, III, Richard M. Goldberg, Monica M. Bertagnolli, Charles S. Fuchs, for the Cancer and Leukemia Group B, North Central Cancer Treatment Group, Canadian Cancer Society Research Institute, Southwest Oncology Group
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (23): 7322–7329.
https://doi.org/10.1158/1078-0432.CCR-09-1570
Published: 30 November 2009
View article titled, <em>KRAS</em> Mutation in Stage III Colon Cancer and Clinical Outcome Following Intergroup Trial CALGB 89803
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Journal Articles

Lymphocytic Reaction to Colorectal Cancer Is Associated with Longer Survival, Independent of Lymph Node Count, Microsatellite Instability, and CpG Island Methylator Phenotype

Shuji Ogino, Katsuhiko Nosho, Natsumi Irahara, Jeffrey A. Meyerhardt, Yoshifumi Baba, Kaori Shima, Jonathan N. Glickman, Cristina R. Ferrone, Mari Mino-Kenudson, Noriko Tanaka, Glenn Dranoff, Edward L. Giovannucci, Charles S. Fuchs
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (20): 6412–6420.
https://doi.org/10.1158/1078-0432.CCR-09-1438
Published: 14 October 2009
View article titled, Lymphocytic Reaction to Colorectal Cancer Is Associated with Longer Survival, Independent of Lymph Node Count, Microsatellite Instability, and CpG Island Methylator Phenotype
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Includes: Supplementary data
Journal Articles

Interaction of Molecular Markers and Physical Activity on Mortality in Patients with Colon Cancer

Jeffrey A. Meyerhardt, Shuji Ogino, Gregory J. Kirkner, Andrew T. Chan, Brian Wolpin, Kimmie Ng, Katsuhiko Nosho, Kaori Shima, Edward L. Giovannucci, Massimo Loda, Charles S. Fuchs
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (18): 5931–5936.
https://doi.org/10.1158/1078-0432.CCR-09-0496
Published: 14 September 2009
View article titled, Interaction of Molecular Markers and Physical Activity on Mortality in Patients with Colon Cancer
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Journal Articles

Relationship of CDX2 Loss with Molecular Features and Prognosis in Colorectal Cancer

Yoshifumi Baba, Katsuhiko Nosho, Kaori Shima, Ellen Freed, Natsumi Irahara, Juliet Philips, Jeffrey A. Meyerhardt, Jason L. Hornick, Ramesh A. Shivdasani, Charles S. Fuchs, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (14): 4665–4673.
https://doi.org/10.1158/1078-0432.CCR-09-0401
Published: 15 July 2009
View article titled, Relationship of CDX2 Loss with Molecular Features and Prognosis in Colorectal Cancer
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Journal Articles

A Cohort Study of Cyclin D1 Expression and Prognosis in 602 Colon Cancer Cases

Shuji Ogino, Katsuhiko Nosho, Natsumi Irahara, Shoko Kure, Kaori Shima, Yoshifumi Baba, Saori Toyoda, Li Chen, Edward L. Giovannucci, Jeffrey A. Meyerhardt, Charles S. Fuchs
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (13): 4431–4438.
https://doi.org/10.1158/1078-0432.CCR-08-3330
Published: 01 July 2009
View article titled, A Cohort Study of Cyclin D1 Expression and Prognosis in 602 Colon Cancer Cases
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Includes: Supplementary data
Journal Articles

DNMT3B Expression Might Contribute to CpG Island Methylator Phenotype in Colorectal Cancer

Katsuhiko Nosho, Kaori Shima, Natsumi Irahara, Shoko Kure, Yoshifumi Baba, Gregory J. Kirkner, Li Chen, Sumita Gokhale, Aditi Hazra, Donna Spiegelman, Edward L. Giovannucci, Rudolf Jaenisch, Charles S. Fuchs, Shuji Ogino
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (11): 3663–3671.
https://doi.org/10.1158/1078-0432.CCR-08-2383
Published: 01 June 2009
View article titled, DNMT3B Expression Might Contribute to CpG Island Methylator Phenotype in Colorectal Cancer
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Includes: Supplementary data