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Joseph A. Califano
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Journal Articles

So Close, and Yet… Plasma HPV DNA Detection of Recurrent HPV Oropharynx Cancer

Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res OF1–OF2.
https://doi.org/10.1158/1078-0432.CCR-25-0012
Published: 14 March 2025
View articletitled, So Close, and Yet… Plasma HPV DNA Detection of Recurrent HPV Oropharynx Cancer
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Journal Articles

Abstract P004: Mapping the tumor-sentinel node immune migratome demonstrates a key role for CCR7+ dendritic cells in the successful response to immunoradiotherapy

Robert Saddawi-Konefka, Riyam Al Msari, Shiqi Tang, Lauren M. Clubb, Santiago Fassardi, Riley Jones, Farhoud Faraji, Shiruyeh Schokrpur, Bryan S. Yung, Michael M. Allevato, Shawn M. Jensen, Bernard A. Fox, Richard Bell, J. Silvio Gutkind, Andrew Sharabi, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2025) 31 (2_Supplement): P004.
https://doi.org/10.1158/1557-3265.TARGETEDTHERAP-P004
Published: 26 January 2025
View articletitled, Abstract P004: Mapping the tumor-sentinel node immune migratome demonstrates a key role for CCR7+ dendritic cells in the successful response to immunoradiotherapy
Journal Articles

Abstract PR06: Cooperative HPV and YAP-mediated oncogenic reprogramming of oral progenitors into cancer stem cells at single cell resolution

Farhoud Faraji, Sydney I. Ramirez, Lauren M. Clubb, Kuniaki Sato, Paola Y. Anguiano Quiroz, William M. G. Galloway, Thomas S. Hoang, Kate Medetgul-Ernar, Pauline Marangoni, Alfredo A. Molinolo, Joseph A. Califano, Quinton Smith, Ophir D. Klein, Pablo Tamayo, J. Silvio Gutkind
Journal: Clinical Cancer Research
Clin Cancer Res (2023) 29 (18_Supplement): PR06.
https://doi.org/10.1158/1557-3265.AACRAHNS23-PR06
Published: 15 September 2023
View articletitled, Abstract PR06: Cooperative HPV and YAP-mediated oncogenic reprogramming of oral progenitors into cancer stem cells at single cell resolution
Journal Articles

Role of B Cells in Responses to Checkpoint Blockade Immunotherapy and Overall Survival of Cancer Patients

Sangwoo S. Kim, Whitney A. Sumner, Sayuri Miyauchi, Ezra E.W. Cohen, Joseph A. Califano, Andrew B. Sharabi
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (22): 6075–6082.
https://doi.org/10.1158/1078-0432.CCR-21-0697
Published: 15 November 2021
View articletitled, Role of B Cells in Responses to Checkpoint Blockade Immunotherapy and Overall Survival of Cancer Patients
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Journal Articles

B Cells Improve Overall Survival in HPV-Associated Squamous Cell Carcinomas and Are Activated by Radiation and PD-1 Blockade

Sangwoo S. Kim, Sarek Shen, Sayuri Miyauchi, P. Dominick Sanders, Ida Franiak-Pietryga, Loren Mell, J. Silvio Gutkind, Ezra E.W. Cohen, Joseph A. Califano, Andrew B. Sharabi
Journal: Clinical Cancer Research
Clin Cancer Res (2020) 26 (13): 3345–3359.
https://doi.org/10.1158/1078-0432.CCR-19-3211
Published: 01 July 2020
View articletitled, B Cells Improve Overall Survival in HPV-Associated Squamous Cell Carcinomas and Are Activated by Radiation and PD-1 Blockade
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Includes: Supplementary data
Journal Articles

Abstract A01: HPV+ oral cancer PDXs identify prognostic utility for E2F target gene expression and mutation burden

Nicole D. Facompre, Pavithra Rajagopalan, Alexander T. Pearson, Kathleen T. Montone, Claire D. James, Frederico O. Gleber-Netto, Hiroshi Nakagawa, Elizabeth A. White, Anil K. Rustgi, Joseph A. Califano, Curtis R. Pickering, Bradley Windle, Iaian M. Morgan, Phyllis A. Gimotty, Devraj Basu
Journal: Clinical Cancer Research
Clin Cancer Res (2020) 26 (12_Supplement_2): A01.
https://doi.org/10.1158/1557-3265.AACRAHNS19-A01
Published: 15 June 2020
View articletitled, Abstract A01: HPV+ oral cancer PDXs identify prognostic utility for E2F target gene expression and mutation burden
Journal Articles

Cannabinoids Promote Progression of HPV-Positive Head and Neck Squamous Cell Carcinoma via p38 MAPK Activation

Chao Liu, Sayed H. Sadat, Koji Ebisumoto, Akihiro Sakai, Bharat A. Panuganti, Shuling Ren, Yusuke Goto, Sunny Haft, Takahito Fukusumi, Mizuo Ando, Yuki Saito, Theresa Guo, Pablo Tamayo, Huwate Yeerna, William Kim, Jacqueline Hubbard, Andrew B. Sharabi, J. Silvio Gutkind, Joseph A. Califano
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2020) 26 (11): 2693–2703.
https://doi.org/10.1158/1078-0432.CCR-18-3301
Published: 01 June 2020
View articletitled, Cannabinoids Promote Progression of HPV-Positive Head and Neck Squamous Cell Carcinoma via p38 MAPK Activation
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Includes: Supplementary data
Journal Articles

Immune Modulation of Head and Neck Squamous Cell Carcinoma and the Tumor Microenvironment by Conventional Therapeutics

Sayuri Miyauchi, Sangwoo S. Kim, John Pang, Kathryn A. Gold, J. Silvio Gutkind, Joseph A. Califano, Loren K. Mell, Ezra E.W. Cohen, Andrew B. Sharabi
Journal: Clinical Cancer Research
Clin Cancer Res (2019) 25 (14): 4211–4223.
https://doi.org/10.1158/1078-0432.CCR-18-0871
Published: 15 July 2019
View articletitled, Immune Modulation of Head and Neck Squamous Cell Carcinoma and the Tumor Microenvironment by Conventional Therapeutics
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Journal Articles

Correction: Tadalafil Augments Tumor-specific Immunity in Patients with Head and Neck Squamous Cell Carcinoma

Joseph A. Califano, Zubair Khan, Kimberly A. Noonan, Lakshmi Rudraraju, Zhe Zhang, Hao Wang, Steven Goodman, Christine G. Gourin, Patrick K. Ha, Carole Fakhry, John Saunders, Marshall Levine, Mei Tang, Geoffrey Neuner, Jeremy D. Richmon, Ray Blanco, Nishant Agrawal, Wayne M. Koch, Shanthi Marur, Donald T. Weed, Paolo Serafini, Ivan Borrello
Journal: Clinical Cancer Research
Clin Cancer Res (2018) 24 (23): 6100.
https://doi.org/10.1158/1078-0432.CCR-18-3298
Published: 03 December 2018
View articletitled, Correction: Tadalafil Augments Tumor-specific Immunity in Patients with Head and Neck Squamous Cell Carcinoma
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Journal Articles

The NOTCH4–HEY1 Pathway Induces Epithelial–Mesenchymal Transition in Head and Neck Squamous Cell Carcinoma

Takahito Fukusumi, Theresa W. Guo, Akihiro Sakai, Mizuo Ando, Shuling Ren, Sunny Haft, Chao Liu, Panomwat Amornphimoltham, J. Silvio Gutkind, Joseph A. Califano
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2018) 24 (3): 619–633.
https://doi.org/10.1158/1078-0432.CCR-17-1366
Published: 31 January 2018
View articletitled, The NOTCH4–HEY1 Pathway Induces Epithelial–Mesenchymal Transition in Head and Neck Squamous Cell Carcinoma
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Includes: Supplementary data
Journal Articles

Abstract 05: Untangling the gene-epigenome networks: Timing of epigenetic regulation of gene expression in acquired cetuximab resistance gene programs

Genevieve Stein-O'Brien, Luciane T. Kagohara, Sijia Li, Manjusha Thakar, Ruchira Ranaweera, Michael Considine, Ludmila V. Danilova, Hiroyuki Ozawa, Joseph A. Califano, Daria A. Gaykalova, Michael F. Ochs, Christine H. Chung, Elana J. Fertig
Journal: Clinical Cancer Research
Clin Cancer Res (2017) 23 (23_Supplement): 05.
https://doi.org/10.1158/1557-3265.AACRAHNS17-05
Published: 30 November 2017
View articletitled, Abstract 05: Untangling the gene-epigenome networks: Timing of epigenetic regulation of gene expression in acquired cetuximab resistance gene programs
Journal Articles

Tadalafil Augments Tumor Specific Immunity in Patients with Head and Neck Squamous Cell Carcinoma

Joseph A. Califano, Zubair Khan, Kimberly A. Noonan, Lakshmi Rudraraju, Zhe Zhang, Hao Wang, Steven Goodman, Christine G. Gourin, Patrick K. Ha, Carole Fakhry, John Saunders, Marshall Levine, Mei Tang, Geoffrey Neuner, Jeremy D. Richmon, Ray Blanco, Nishant Agrawal, Wayne M. Koch, Shanthi Marur, Donald T. Weed, Paolo Serafini, Ivan Borrello
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2015) 21 (1): 30–38.
https://doi.org/10.1158/1078-0432.CCR-14-1716
Published: 05 January 2015
View articletitled, Tadalafil Augments Tumor Specific Immunity in Patients with Head and Neck Squamous Cell Carcinoma
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Includes: Supplementary data
Journal Articles

EDNRB and DCC Salivary Rinse Hypermethylation Has a Similar Performance as Expert Clinical Examination in Discrimination of Oral Cancer/Dysplasia versus Benign Lesions

Juliana Schussel, Xian Chong Zhou, Zhe Zhang, Kavita Pattani, Francisco Bermudez, Germain Jean-Charles, Thomas McCaffrey, Tapan Padhya, Joan Phelan, Silvia Spivakovsky, Mariana Brait, Ryan Li, Helen Yoo Bowne, Judith D. Goldberg, Linda Rolnitzky, Miriam Robbins, A. Ross Kerr, David Sirois, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2013) 19 (12): 3268–3275.
https://doi.org/10.1158/1078-0432.CCR-12-3496
Published: 13 June 2013
View articletitled, EDNRB and DCC Salivary Rinse Hypermethylation Has a Similar Performance as Expert Clinical Examination in Discrimination of Oral Cancer/Dysplasia versus Benign Lesions
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Includes: Supplementary data
Journal Articles

Detection of TIMP3 Promoter Hypermethylation in Salivary Rinse as an Independent Predictor of Local Recurrence-Free Survival in Head and Neck Cancer

Wenyue Sun, David Zaboli, Hao Wang, Yan Liu, Demetri Arnaoutakis, Tanbir Khan, Zubair Khan, Wayne M. Koch, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (4): 1082–1091.
https://doi.org/10.1158/1078-0432.CCR-11-2392
Published: 14 February 2012
View articletitled, Detection of TIMP3 Promoter Hypermethylation in Salivary Rinse as an Independent Predictor of Local Recurrence-Free Survival in Head and Neck Cancer
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Includes: Supplementary data
Journal Articles

Detection of Promoter Hypermethylation in Salivary Rinses as a Biomarker for Head and Neck Squamous Cell Carcinoma Surveillance

André Lopes Carvalho, Rui Henrique, Carmen Jeronimo, Chetan S. Nayak, Ashok N. Reddy, Mohammad O. Hoque, Steven Chang, Mariana Brait, Wei-Wen Jiang, Michael M. Kim, Quia Claybourne, David Goldenberg, Zubair Khan, Tanbir Khan, William H. Westra, David Sidransky, Wayne Koch, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2011) 17 (14): 4782–4789.
https://doi.org/10.1158/1078-0432.CCR-11-0324
Published: 17 July 2011
View articletitled, Detection of Promoter Hypermethylation in Salivary Rinses as a Biomarker for Head and Neck Squamous Cell Carcinoma Surveillance
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Includes: Supplementary data
Journal Articles

Integrated, Genome-Wide Screening for Hypomethylated Oncogenes in Salivary Gland Adenoid Cystic Carcinoma

Chunbo Shao, Wenyue Sun, Marietta Tan, Chad A. Glazer, Sheetal Bhan, Xiaoli Zhong, Carole Fakhry, Rajni Sharma, William H. Westra, Mohammad O. Hoque, Christopher A. Moskaluk, David Sidransky, Joseph A. Califano, Patrick K. Ha
Journal: Clinical Cancer Research
Clin Cancer Res (2011) 17 (13): 4320–4330.
https://doi.org/10.1158/1078-0432.CCR-10-2992
Published: 05 July 2011
View articletitled, Integrated, Genome-Wide Screening for Hypomethylated Oncogenes in Salivary Gland Adenoid Cystic Carcinoma
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Journal Articles

An Epigenetic Marker Panel for Detection of Lung Cancer Using Cell-Free Serum DNA

Shahnaz Begum, Mariana Brait, Santanu Dasgupta, Kimberly L. Ostrow, Marianna Zahurak, André L. Carvalho, Joseph A. Califano, Steven N. Goodman, William H. Westra, Mohammad Obaidul Hoque, David Sidransky
Journal: Clinical Cancer Research
Clin Cancer Res (2011) 17 (13): 4494–4503.
https://doi.org/10.1158/1078-0432.CCR-10-3436
Published: 05 July 2011
View articletitled, An Epigenetic Marker Panel for Detection of Lung Cancer Using Cell-Free Serum DNA
Open the PDF for An Epigenetic Marker Panel for Detection of Lung Cancer Using Cell-Free Serum DNA in another window
Includes: Supplementary data
Journal Articles

BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer

Sheetal Bhan, Sandeep S. Negi, Chunbo Shao, Chad A. Glazer, Alice Chuang, Daria A. Gaykalova, Wenyue Sun, David Sidransky, Patrick K. Ha, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2011) 17 (13): 4267–4276.
https://doi.org/10.1158/1078-0432.CCR-11-0653
Published: 05 July 2011
View articletitled, BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer
Open the PDF for BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer in another window
Journal Articles

TKTL1 Is Activated by Promoter Hypomethylation and Contributes to Head and Neck Squamous Cell Carcinoma Carcinogenesis through Increased Aerobic Glycolysis and HIF1α Stabilization

Wenyue Sun, Yan Liu, Chad A. Glazer, Chunbo Shao, Sheetal Bhan, Semra Demokan, Ming Zhao, Michelle A. Rudek, Patrick K. Ha, Joseph A. Califano
Journal: Clinical Cancer Research
Clin Cancer Res (2010) 16 (3): 857–866.
https://doi.org/10.1158/1078-0432.CCR-09-2604
Published: 01 February 2010
View articletitled, TKTL1 Is Activated by Promoter Hypomethylation and Contributes to Head and Neck Squamous Cell Carcinoma Carcinogenesis through Increased Aerobic Glycolysis and HIF1α Stabilization
Open the PDF for TKTL1 Is Activated by Promoter Hypomethylation and Contributes to Head and Neck Squamous Cell Carcinoma Carcinogenesis through Increased Aerobic Glycolysis and HIF1α Stabilization in another window
Includes: Supplementary data
Journal Articles

The Ligamp TP53 Assay for Detection of Minimal Residual Disease in Head and Neck Squamous Cell Carcinoma Surgical Margins

M. Luana Poeta, Judith Manola, David Goldenberg, Arlene Forastiere, Joseph A. Califano, John A. Ridge, Jarrard Goodwin, Daniel Kenady, John Saunders, William Westra, David Sidransky, Wayne M. Koch
Journal: Clinical Cancer Research
Clin Cancer Res (2009) 15 (24): 7658–7665.
https://doi.org/10.1158/1078-0432.CCR-09-1433
Published: 14 December 2009
View articletitled, The Ligamp TP53 Assay for Detection of Minimal Residual Disease in Head and Neck Squamous Cell Carcinoma Surgical Margins
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