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Elli Papaemmanuil
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Journal Articles

Integrated Genomic and Transcriptomic Analysis Improves Disease Classification and Risk Stratification of MDS with Ring Sideroblasts

Gabriele Todisco, Maria Creignou, Elsa Bernard, Ann-Charlotte Björklund, Pedro Luis Moura, Bianca Tesi, Teresa Mortera-Blanco, Birgitta Sander, Monika Jansson, Gunilla Walldin, Indira Barbosa, Susanne E. Reinsbach, Isabel Juliana Hofman, Christer Nilsson, Tetsuichi Yoshizato, Marios Dimitriou, David Chang, Svannildur Olafsdottir, Sigita Venckute Larsson, Magnus Tobiasson, Luca Malcovati, Petter Woll, Sten Eirik W. Jacobsen, Elli Papaemmanuil, Eva Hellström-Lindberg
Journal: Clinical Cancer Research
Clin Cancer Res (2023) 29 (20): 4256–4267.
https://doi.org/10.1158/1078-0432.CCR-23-0538
Published: 13 October 2023
View articletitled, Integrated Genomic and Transcriptomic Analysis Improves Disease Classification and Risk Stratification of MDS with Ring Sideroblasts
Open the PDF for Integrated Genomic and Transcriptomic Analysis Improves Disease Classification and Risk Stratification of MDS with Ring Sideroblasts in another window
Includes: Supplementary data
Journal Articles

Molecular Subclasses of Clear Cell Ovarian Carcinoma and Their Impact on Disease Behavior and Outcomes

Kelly L. Bolton, Denise Chen, Rosario Corona de la Fuente, Zhuxuan Fu, Rajmohan Murali, Martin Köbel, Yanis Tazi, Julie M. Cunningham, Irenaeus C.C. Chan, Brian J. Wiley, Lea A. Moukarzel, Stacey J. Winham, Sebastian M. Armasu, Jenny Lester, Esther Elishaev, Angela Laslavic, Catherine J. Kennedy, Anna Piskorz, Magdalena Sekowska, Alison H. Brand, Yoke-Eng Chiew, Paul Pharoah, Kevin M. Elias, Ronny Drapkin, Michael Churchman, Charlie Gourley, Anna DeFazio, Beth Karlan, James D. Brenton, Britta Weigelt, Michael S. Anglesio, David Huntsman, Simon Gayther, Jason Konner, Francesmary Modugno, Kate Lawrenson, Ellen L. Goode, Elli Papaemmanuil
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (22): 4947–4956.
https://doi.org/10.1158/1078-0432.CCR-21-3817
Published: 14 November 2022
View articletitled, Molecular Subclasses of Clear Cell Ovarian Carcinoma and Their Impact on Disease Behavior and Outcomes
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Includes: Supplementary data
Journal Articles

Abstract B022: Subclonal somatic copy number alterations emerge and dominate in relapsed/refractory osteosarcoma

Michael D. Kinnaman, Simone Zaccaria, Alvin Makohon-Moore, Gunes Gundem, Juan E. Arango Ossa, Nancy Bouvier, Filemon S. Dela Cruz, Meera Hameed, Julia Lynne Glade Bender, William D. Tap, Paul Meyers, Elli Papaemmanuil, Andrew Kung, Christine A. Iacobuzio-Donahue
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (18_Supplement): B022.
https://doi.org/10.1158/1557-3265.SARCOMAS22-B022
Published: 15 September 2022
View articletitled, Abstract B022: Subclonal somatic copy number alterations emerge and dominate in relapsed/refractory osteosarcoma
Journal Articles

Capture Rate of V(D)J Sequencing for Minimal Residual Disease Detection in Multiple Myeloma

Malin Hultcrantz, Even H. Rustad, Venkata Yellapantula, Allison Jacob, Theresia Akhlaghi, Neha Korde, Sham Mailankody, Alexander M. Lesokhin, Hani Hassoun, Eric L. Smith, Oscar B. Lahoud, Heather J. Landau, Gunjan L. Shah, Michael Scordo, David J. Chung, Sergio Giralt, Elli Papaemmanuil, Ola Landgren
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (10): 2160–2166.
https://doi.org/10.1158/1078-0432.CCR-20-2995
Published: 13 May 2022
View articletitled, Capture Rate of V(D)J Sequencing for Minimal Residual Disease Detection in Multiple Myeloma
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Journal Articles

Bone Marrow Surveillance of Pediatric Cancer Survivors Identifies Clones that Predict Therapy-Related Leukemia

Barbara Spitzer, Kayleigh D. Rutherford, Gunes Gundem, Erin M. McGovern, Nathan E. Millard, Juan E. Arango Ossa, Irene Y. Cheung, Teng Gao, Max F. Levine, Yanming Zhang, Juan S. Medina-Martínez, Yi Feng, Ryan N. Ptashkin, Kelly L. Bolton, Noushin Farnoud, Yangyu Zhou, Minal A. Patel, Georgios Asimomitis, Cassidy C. Cobbs, Neeman Mohibullah, Kety H. Huberman, Maria E. Arcilla, Brian H. Kushner, Shakeel Modak, Andrew L. Kung, Ahmet Zehir, Ross L. Levine, Scott A. Armstrong, Nai Kong V. Cheung, Elli Papaemmanuil
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (8): 1614–1627.
https://doi.org/10.1158/1078-0432.CCR-21-2451
Published: 14 April 2022
View articletitled, Bone Marrow Surveillance of Pediatric Cancer Survivors Identifies Clones that Predict Therapy-Related Leukemia
Open the PDF for Bone Marrow Surveillance of Pediatric Cancer Survivors Identifies Clones that Predict Therapy-Related Leukemia in another window
Includes: Supplementary data
Journal Articles

Recurrent Mutations in Cyclin D3 Confer Clinical Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia

Catherine C. Smith, Aaron D. Viny, Evan Massi, Cyriac Kandoth, Nicholas D. Socci, Franck Rapaport, Matthieu Najm, Juan S. Medina-Martinez, Elli Papaemmanuil, Theodore C. Tarver, Henry H. Hsu, Mai H. Le, Brian West, Gideon Bollag, Barry S. Taylor, Ross L. Levine, Neil P. Shah
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (14): 4003–4011.
https://doi.org/10.1158/1078-0432.CCR-20-3458
Published: 15 July 2021
View articletitled, Recurrent Mutations in Cyclin D3 Confer Clinical Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia
Open the PDF for Recurrent Mutations in Cyclin D3 Confer Clinical Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia in another window
Includes: Supplementary data
Journal Articles

Initial Whole-Genome Sequencing of Plasma Cell Neoplasms in First Responders and Recovery Workers Exposed to the World Trade Center Attack of September 11, 2001

Francesco Maura, Benjamin Diamond, Kylee H. Maclachlan, Andriy Derkach, Venkata D. Yellapantula, Even H. Rustad, Malin Hultcrantz, Urvi A. Shah, Jessica Hong, Heather J. Landau, Christine A. Iacobuzio-Donahue, Elli Papaemmanuil, Shani Irby, Laura Crowley, Michael Crane, Mayris P. Webber, David G. Goldfarb, Rachel Zeig-Owens, Orsi Giricz, Amit Verma, David J. Prezant, Ahmet Dogan, Sohrab P. Shah, Yanming Zhang, Ola Landgren
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (7): 2111–2118.
https://doi.org/10.1158/1078-0432.CCR-20-2245
Published: 01 April 2021
View articletitled, Initial Whole-Genome Sequencing of Plasma Cell Neoplasms in First Responders and Recovery Workers Exposed to the World Trade Center Attack of September 11, 2001
Open the PDF for Initial Whole-Genome Sequencing of Plasma Cell Neoplasms in First Responders and Recovery Workers Exposed to the World Trade Center Attack of September 11, 2001 in another window
Includes: Supplementary data
Journal Articles

Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays

Catherine C. Coombs, Nancy K. Gillis, Xianming Tan, Jonathan S. Berg, Markus Ball, Maria E. Balasis, Nathan D. Montgomery, Kelly L. Bolton, Joel S. Parker, Tania E. Mesa, Sean J. Yoder, Michele C. Hayward, Nirali M. Patel, Kristy L. Richards, Christine M. Walko, Todd C. Knepper, John T. Soper, Jared Weiss, Juneko E. Grilley-Olson, William Y. Kim, H. Shelton Earp, III, Ross L. Levine, Elli Papaemmanuil, Ahmet Zehir, D. Neil Hayes, Eric Padron
Journal: Clinical Cancer Research
Clin Cancer Res (2018) 24 (23): 5918–5924.
https://doi.org/10.1158/1078-0432.CCR-18-1201
Published: 03 December 2018
View articletitled, Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays
Open the PDF for Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays in another window
Includes: Supplementary data
Journal Articles

Abstract IA42: Interpreting the role of acquired gene mutations in defining clinical outcome and treatment response.

Elli Papaemmanuil
Journal: Clinical Cancer Research
Clin Cancer Res (2015) 21 (17_Supplement): IA42.
https://doi.org/10.1158/1557-3265.HEMMAL14-IA42
Published: 19 August 2015
View articletitled, Abstract IA42: Interpreting the role of acquired gene mutations in defining clinical outcome and treatment response.
Journal Articles

Abstract IA12: Correlating cancer heterogeneity to treatment response and relapse

Elli Papaemmanuil
Journal: Clinical Cancer Research
Clin Cancer Res (2015) 21 (4_Supplement): IA12.
https://doi.org/10.1158/1557-3265.PMS14-IA12
Published: 13 February 2015
View articletitled, Abstract IA12: Correlating cancer heterogeneity to treatment response and relapse