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Catherine J. Wu
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Journal Articles

Clinical Importance of the lncRNA NEAT1 in Cancer Patients Treated with Immune Checkpoint Inhibitors

Joseph Toker, J. Bryan Iorgulescu, Alexander L. Ling, Genaro R. Villa, Josephina A.M.A. Gadet, Laxmi Parida, Gad Getz, Catherine J. Wu, David A. Reardon, E. Antonio Chiocca, Marco Mineo
Journal: Clinical Cancer Research
Clin Cancer Res (2023) 29 (12): 2226–2238.
https://doi.org/10.1158/1078-0432.CCR-22-3714
Published: 13 June 2023
View article titled, Clinical Importance of the lncRNA <em>NEAT1</em> in Cancer Patients Treated with Immune Checkpoint Inhibitors
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Includes: Supplementary data
Journal Articles

Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

Jian Wang, Tobias Weiss, Marian C. Neidert, Nora C. Toussaint, Reza Naghavian, Carla Sellés Moreno, Magdalena Foege, Paula Tomas Ojer, Gioele Medici, Ivan Jelcic, Daniel Schulz, Elisabeth Rushing, Susanne Dettwiler, Barbara Schrörs, Joo Heon Shin, Ron McKay, Catherine J. Wu, Andreas Lutterotti, Mireia Sospedra, Holger Moch, Erich F. Greiner, Bernd Bodenmiller, Luca Regli, Michael Weller, Patrick Roth, Roland Martin
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (24): 5368–5382.
https://doi.org/10.1158/1078-0432.CCR-22-1741
Published: 15 December 2022
View article titled, Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4<sup>+</sup> T-cell Responses in Glioblastoma
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Includes: Supplementary data
Journal Articles

Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma

Thomas Denize, Yue Hou, Jean-Christophe Pignon, Emily Walton, Destiny J. West, Gordon J. Freeman, David A. Braun, Catherine J. Wu, Saurabh Gupta, Robert J. Motzer, Michael B. Atkins, David McDermott, Toni K. Choueiri, Sachet A. Shukla, Sabina Signoretti
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (18): 4045–4055.
https://doi.org/10.1158/1078-0432.CCR-22-0923
Published: 15 September 2022
View article titled, Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma
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Includes: Supplementary data
Journal Articles

Improved T-cell Immunity Following Neoadjuvant Chemotherapy in Ovarian Cancer

Min Liu, Nabihah Tayob, Livius Penter, MacLean Sellars, Anna Tarren, Vipheaviny Chea, Isabel Carulli, Teddy Huang, Shuqiang Li, Su-Chun Cheng, Phuong Le, Laura Frackiewicz, Julia Fasse, Courtney Qi, Joyce F. Liu, Elizabeth H. Stover, Jennifer Curtis, Kenneth J. Livak, Donna Neuberg, Guanglan Zhang, Ursula A. Matulonis, Catherine J. Wu, Derin B. Keskin, Panagiotis A. Konstantinopoulos
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (15): 3356–3366.
https://doi.org/10.1158/1078-0432.CCR-21-2834
Published: 02 August 2022
View article titled, Improved T-cell Immunity Following Neoadjuvant Chemotherapy in Ovarian Cancer
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Includes: Supplementary data
Journal Articles

Report of the First International Symposium on NUT Carcinoma

Christopher A. French, Michael L. Cheng, Glenn J. Hanna, Steven G. DuBois, Nicole G. Chau, Christine L. Hann, Simone Storck, Ravi Salgia, Matteo Trucco, Jennifer Tseng, Anastasios Stathis, Richard Piekarz, Ulrich M. Lauer, Christophe Massard, Kelly Bennett, Shodeinde Coker, Ulrike Tontsch-Grunt, Martin L. Sos, Sida Liao, Catherine J. Wu, Kornelia Polyak, Sarina A. Piha-Paul, Geoffrey I. Shapiro
Journal: Clinical Cancer Research
Clin Cancer Res (2022) 28 (12): 2493–2505.
https://doi.org/10.1158/1078-0432.CCR-22-0591
Published: 13 June 2022
View article titled, Report of the First International Symposium on NUT Carcinoma
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Journal Articles

Network for Biomarker Immunoprofiling for Cancer Immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC)

Helen X. Chen, Minkyung Song, Holden T. Maecker, Sacha Gnjatic, David Patton, J. Jack Lee, Stacey J. Adam, Radim Moravec, Xiaole Shirley Liu, Ethan Cerami, James Lindsay, Ming Tang, F. Stephen Hodi, Catherine J. Wu, Ignacio I. Wistuba, Gheath Al-Atrash, Chantale Bernatchez, Sean C. Bendall, Stephen M. Hewitt, Elad Sharon, Howard Streicher, Rebecca A. Enos, Melissa D. Bowman, Valerie M. Tatard-Leitman, Beatriz Sanchez-Espiridion, Srinika Ranasinghe, Mina Pichavant, Diane M. Del Valle, Joyce Yu, Sylvie Janssens, Jenny Peterson-Klaus, Cathy Rowe, Gerold Bongers, Robert R. Jenq, Chia-Chi Chang, Jeffrey S. Abrams, Margaret Mooney, James H. Doroshow, Lyndsay N. Harris, Magdalena Thurin
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2021) 27 (18): 5038–5048.
https://doi.org/10.1158/1078-0432.CCR-20-3241
Published: 15 September 2021
View article titled, Network for Biomarker Immunoprofiling for Cancer Immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC)
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Journal Articles

Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network

Zexian Zeng, Jingxin Fu, Carrie Cibulskis, Aashna Jhaveri, Curtis Gumbs, Biswajit Das, Beatriz Sanchez-Espiridion, Sylvie Janssens, Len Taing, Jin Wang, James Lindsay, Tomas Vilimas, Jianhua Zhang, Collin Tokheim, Avinash Sahu, Peng Jiang, Chunhua Yan, Dzifa Yawa Duose, Ethan Cerami, Li Chen, David Cohen, Qingrong Chen, Rebecca Enos, Xin Huang, Jack J. Lee, Yang Liu, Donna S. Neuberg, Cu Nguyen, Candace Patterson, Sharmistha Sarkar, Sachet Shukla, Ming Tang, Junko Tsuji, Mohamed Uduman, Xiaoman Wang, Jason L. Weirather, Jijun Yu, Joyce Yu, Jianjun Zhang, Jiexin Zhang, Daoud Meerzaman, Magdalena Thurin, Andrew Futreal, Chris Karlovich, Stacey B. Gabriel, Ignacio Ivan Wistuba, X. Shirley Liu, Catherine J. Wu
Journal: Clinical Cancer Research
Series: Author Choice
Clin Cancer Res (2021) 27 (18): 5049–5061.
https://doi.org/10.1158/1078-0432.CCR-20-3251
Published: 15 September 2021
View article titled, Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network
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Includes: Supplementary data
Journal Articles

Immune Profiling Mass Cytometry Assay Harmonization: Multicenter Experience from CIMAC-CIDC

Bita Sahaf, Mina Pichavant, Brian H. Lee, Caroline Duault, Emily M. Thrash, Melanie Davila, Nicolas Fernandez, Karen Millerchip, Salah-Eddine Bentebibel, Cara Haymaker, Natalia Sigal, Diane M. Del Valle, Srinika Ranasinghe, Sarah Fayle, Beatriz Sanchez-Espiridion, Jiexin Zhang, Chantale Bernatchez, Catherine J. Wu, Ignacio I. Wistuba, Seunghee Kim-Schulze, Sacha Gnjatic, Sean C. Bendall, Minkyung Song, Magdalena Thurin, J. Jack Lee, Holden T. Maecker, Adeeb Rahman
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (18): 5062–5071.
https://doi.org/10.1158/1078-0432.CCR-21-2052
Published: 15 September 2021
View article titled, Immune Profiling Mass Cytometry Assay Harmonization: Multicenter Experience from CIMAC-CIDC
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Journal Articles

Expression of T-Cell Exhaustion Molecules and Human Endogenous Retroviruses as Predictive Biomarkers for Response to Nivolumab in Metastatic Clear Cell Renal Cell Carcinoma

Miriam Ficial, Opeyemi A. Jegede, Miriam Sant'Angelo, Yue Hou, Abdallah Flaifel, Jean-Christophe Pignon, David A. Braun, Megan Wind-Rotolo, Maura A. Sticco-Ivins, Paul J. Catalano, Gordon J. Freeman, Arlene H. Sharpe, F. Stephen Hodi, Robert J. Motzer, Catherine J. Wu, Michael B. Atkins, David F. McDermott, Sachet A. Shukla, Toni K. Choueiri, Sabina Signoretti
Journal: Clinical Cancer Research
Clin Cancer Res (2021) 27 (5): 1371–1380.
https://doi.org/10.1158/1078-0432.CCR-20-3084
Published: 01 March 2021
View article titled, Expression of T-Cell Exhaustion Molecules and Human Endogenous Retroviruses as Predictive Biomarkers for Response to Nivolumab in Metastatic Clear Cell Renal Cell Carcinoma
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Includes: Supplementary data
Journal Articles

Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers

Hongyi Zhang, Longchao Liu, Jian Zhang, Jiahui Chen, Jianfeng Ye, Sachet Shukla, Jian Qiao, Xiaowei Zhan, Hao Chen, Catherine J. Wu, Yang-Xin Fu, Bo Li
Journal: Clinical Cancer Research
Clin Cancer Res (2020) 26 (6): 1359–1371.
https://doi.org/10.1158/1078-0432.CCR-19-3249
Published: 13 March 2020
View article titled, Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers
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Includes: Supplementary data
Journal Articles

irRECIST for the Evaluation of Candidate Biomarkers of Response to Nivolumab in Metastatic Clear Cell Renal Cell Carcinoma: Analysis of a Phase II Prospective Clinical Trial

Jean-Christophe Pignon, Opeyemi Jegede, Sachet A. Shukla, David A. Braun, Christine E. Horak, Megan Wind-Rotolo, Yuko Ishii, Paul J. Catalano, Jonian Grosha, Abdallah Flaifel, Jesse S. Novak, Kathleen M. Mahoney, Gordon J. Freeman, Arlene H. Sharpe, F. Stephen Hodi, Robert J. Motzer, Toni K. Choueiri, Catherine J. Wu, Michael B. Atkins, David F. McDermott, Sabina Signoretti
Journal: Clinical Cancer Research
Clin Cancer Res (2019) 25 (7): 2174–2184.
https://doi.org/10.1158/1078-0432.CCR-18-3206
Published: 01 April 2019
View article titled, irRECIST for the Evaluation of Candidate Biomarkers of Response to Nivolumab in Metastatic Clear Cell Renal Cell Carcinoma: Analysis of a Phase II Prospective Clinical Trial
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Includes: Supplementary data
Journal Articles

Abstract 27: Integrated analysis of targeted single-cell genetic and transcriptional heterogeneity suggests novel drivers of chronic lymphocytic leukemia

Jean Fan, Lili Wang, Joshua M. Francis, George Georghiou, Sarah Hergert, Shuqiang Li, Rutendo Gambe, Chensheng W. Zhou, Chunxiao Yang, Sheng Xiao, Paola Dal Chin, Michaela Bowden, Dylan Kotliar, Sachet A. Shukla, Jennifer R. Brown, Donna Neuberg, Dario R. Alessi, Cheng-Zhong Zhang, Peter V. Kharchenko, Kenneth J. Livak, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2017) 23 (24_Supplement): 27.
https://doi.org/10.1158/1557-3265.HEMMAL17-27
Published: 14 December 2017
View article titled, Abstract 27: Integrated analysis of targeted single-cell genetic and transcriptional heterogeneity suggests novel drivers of chronic lymphocytic leukemia
Journal Articles

Abstract 29: Characterization and treatment of a novel adoptive transfer model of Sf3b1mut/Atmdel chronic lymphocytic leukemia

Elisa ten Hacken, Lili Wang, Fara Faye Regis, Michael Thomas, Jing Deng, Kaitlyn Baranowski, Zachary Cartun, Silvia Buonamici, Donna Neuberg, Anthony Letai, Ruben Carrasco, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2017) 23 (24_Supplement): 29.
https://doi.org/10.1158/1557-3265.HEMMAL17-29
Published: 14 December 2017
View article titled, Abstract 29: Characterization and treatment of a novel adoptive transfer model of Sf3b1<sup>mut</sup>/Atm<sup>del</sup> chronic lymphocytic leukemia
Journal Articles

Abstract 17: In situ immune expression signatures before and after ipilimumab therapy for relapsed acute myeloid leukemia after allogeneic stem cell transplantation

Pavan Bachireddy, Matthew S. Davids, Michael S. Rooney, Michaela Bowden, Chensheng W. Zhou, Scott J. Rodig, Vincent Ho, Joseph Antin, John Koreth, Edwin Alyea, Robert J. Soiffer, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2017) 23 (24_Supplement): 17.
https://doi.org/10.1158/1557-3265.HEMMAL17-17
Published: 14 December 2017
View article titled, Abstract 17: In situ immune expression signatures before and after ipilimumab therapy for relapsed acute myeloid leukemia after allogeneic stem cell transplantation
Journal Articles

Arresting the Inflammatory Drive of Chronic Lymphocytic Leukemia with Ibrutinib

Pavan Bachireddy, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2016) 22 (7): 1547–1549.
https://doi.org/10.1158/1078-0432.CCR-15-3106
Published: 31 March 2016
View article titled, Arresting the Inflammatory Drive of Chronic Lymphocytic Leukemia with Ibrutinib
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Journal Articles

Abstract IA03: The evolutionary landscape of CLL: Therapeutic implications

Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2016) 22 (1_Supplement): IA03.
https://doi.org/10.1158/1557-3265.PMSCLINGEN15-IA03
Published: 03 January 2016
View article titled, Abstract IA03: The evolutionary landscape of CLL: Therapeutic implications
Journal Articles

Abstract IA19: The evolutionary landscape of chronic lymphocytic leukemia.

Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2015) 21 (17_Supplement): IA19.
https://doi.org/10.1158/1557-3265.HEMMAL14-IA19
Published: 19 August 2015
View article titled, Abstract IA19: The evolutionary landscape of chronic lymphocytic leukemia.
Journal Articles

Mutated BCR-ABL Generates Immunogenic T-cell Epitopes in CML Patients

Ann Cai, Derin B. Keskin, David S. DeLuca, Anselmo Alonso, Wandi Zhang, Guang Lan Zhang, Naa Norkor Hammond, Valentina Nardi, Richard M. Stone, Donna Neuberg, John Sidney, Vladimir Brusic, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (20): 5761–5772.
https://doi.org/10.1158/1078-0432.CCR-12-1182
Published: 14 October 2012
View article titled, Mutated <em>BCR-ABL</em> Generates Immunogenic T-cell Epitopes in CML Patients
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Includes: Supplementary data
Journal Articles

Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

Jennifer R. Brown, Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara, Yaoyu E. Wang, Paola dal Cin, Stacey M. Fernandes, Christina Thompson, Laura MacConaill, Catherine J. Wu, Yves Van de Peer, Mick Correll, Aviv Regev, Donna Neuberg, Arnold S. Freedman
Journal: Clinical Cancer Research
Clin Cancer Res (2012) 18 (14): 3791–3802.
https://doi.org/10.1158/1078-0432.CCR-11-2342
Published: 15 July 2012
View article titled, Integrative Genomic Analysis Implicates Gain of <em>PIK3CA</em> at 3q26 and <em>MYC</em> at 8q24 in Chronic Lymphocytic Leukemia
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Includes: Supplementary data
Journal Articles

Graft-versus-Leukemia Antigen CML66 Elicits Coordinated B-Cell and T-Cell Immunity after Donor Lymphocyte Infusion

Wandi Zhang, Jaewon Choi, Wanyong Zeng, Shelby A. Rogers, Edwin P. Alyea, James G. Rheinwald, Christine M. Canning, Vladimir Brusic, Tetsuro Sasada, Ellis L. Reinherz, Jerome Ritz, Robert J. Soiffer, Catherine J. Wu
Journal: Clinical Cancer Research
Clin Cancer Res (2010) 16 (10): 2729–2739.
https://doi.org/10.1158/1078-0432.CCR-10-0415
Published: 13 May 2010
View article titled, Graft-versus-Leukemia Antigen CML66 Elicits Coordinated B-Cell and T-Cell Immunity after Donor Lymphocyte Infusion
Open the PDF for Graft-versus-Leukemia Antigen CML66 Elicits Coordinated B-Cell and T-Cell Immunity after Donor Lymphocyte Infusion in another window
Includes: Supplementary data