Flavopiridol, a synthetic flavone that inhibits tumor growth in vitro and in vivo, is a potent cyclin-dependent kinase (cdk) inhibitor presently in clinical trials. In the present study, the effect of 100–500 nm flavopiridol on a panel of non-small cell lung cancer cell lines was examined. All express a wild-type retinoblastoma susceptibility protein and lack p16INK4A, and only A549 cells are known to express wild-type p53. During 72 h of treatment, flavopiridol was shown to be cytotoxic to all seven cell lines, as measured by trypan blue exclusion, regardless of whether cells were actively cycling. In most cycling cells, cytotoxicity was preceded or accompanied by cell cycle arrest. Cell death resulted in the appearance of cells with a sub-G1 DNA content, suggestive of apoptosis, which was confirmed by terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling assay and by demonstration of cleavage of caspase targets including poly(ADP-ribose) polymerase, p21Waf1, and p27Kip1. At doses at or below 500 nm, maximal cytotoxicity required 72 h of exposure. Although flavopiridol resulted in the accumulation of p53 in A549 cells, flavopiridol-mediated apoptosis was p53 independent because it occurred to the same degree in A549 cells in which p53 was targeted for degradation by HPV16E6 expression. The data indicate that flavopiridol has activity against non-small cell lung cancers in vitro and is worthy of continued clinical development in the treatment of this disease.

Eukaryotic cell cycle progression is governed by cdks3, a family of enzymes that are regulated by phosphorylation and activated by their association with cyclins (1). In addition, two groups of inhibitors negatively regulate cdk activity. Universal inhibitors, including p21Waf1 and p27Kip1, inhibit all known cdks; ink4 family members, including p16INK4A, inhibit only d-type cdk4 and cdk6 (2). In human cancers, including NSCLCs, cdk inhibitors are commonly absent or present at diminished levels. For example, p16INK4A is frequently lost in tumors that retain a wild-type RB-susceptibility protein (3, 4). p21Waf1 is transcriptionally regulated by p53-dependent and -independent pathways, (5, 6, 7, 8) and is difficult to detect in tumor cells carrying a p53 mutation. p27Kip1, under control of the ubiquitin system (9), is also frequently present only at low levels in tumor cells, and patients whose tumors express the lowest levels tend to have a worse prognosis (10, 11, 12, 13).

Ectopic expression of cdk inhibitors in tumor cell lines often causes cell cycle arrest. For example, p21Waf1 expression results in arrest in G1 and G2(14, 15); high levels of p16INK4A expression results in G1 arrest in cells expressing wild-type RB (16, 17). The ability of cdk inhibitor expression to cause cell death has also been investigated, and the results are complex. For example, expression of p16INK4A and p21Waf1 can protect cells from apoptosis in some model systems (18, 19, 20). In contrast, infection of various cell types with adenoviruses expressing p16INK4A, p18INK4C, or p27Kip1 can result in apoptosis, frequently in a delayed, p53-independent fashion (21, 22, 23).

These observations suggest that pharmacological cdk inhibition may inhibit tumor growth by causing cell cycle arrest and perhaps apoptosis; the latter may be cell type and context dependent (24). In this regard, the cdk inhibitor olomoucine can induce apoptosis in proliferating PC12 cells, whereas cdk inhibition can protect the same cells from apoptosis if they are differentiated (25). Another cdk inhibitor, butyrolactone I, has been shown to induce abrupt apoptosis in HL60 cells (26).

Flavopiridol, presently in clinical trials, is a novel flavone, structurally related to a natural alkaloid originally purified from the extract of the stem bark of Dysoxylum binectariferum, a plant native to India (27). The drug is a potent inhibitor of several cdks, including cdk1 (cdc2), cdk2, cdk4, and cdk7, because it has been shown to directly inhibit the kinase activity of cdks from exponentially growing cells with IC50s of 100–400 nm(27, 28, 29). Structural studies have demonstrated that the aromatic portion of flavopiridol interferes with binding of ATP to the adenine binding pocket of the cdks (30). Furthermore, inhibition of cdk7 prevents the phosphorylation events necessary for activating the other cdks; therefore, the inhibition of cdk1, cdk2, and cdk4 is both direct and indirect.

Flavopiridol can cause arrest both in G1 and G2 phases of the cell cycle, consistent with its inhibition of cdk2, cdk4, and cdk1 (31). In addition, it is active against tumor xenografts in nude mice (27, 32, 33, 34). Recently, flavopiridol has been shown not only to be cytostatic but also cytotoxic to both hematopoietic and epithelial cell lines of diverse origin, including those derived from prostate, esophageal, lung, and head and neck carcinomas (32, 33, 34, 35, 36, 37, 38). In many cases, cytotoxicity is the result of apoptosis, based on cell morphology and DNA fragmentation. In other cells, including the one NSCLC cell line examined, morphological hallmarks of apoptosis have not been observed (35).

In clinical trials, flavopiridol is presently administered by a 72-h continuous infusion, resulting in median steady-state concentrations in the 200–300 nm range (39). To assess the potential activity of flavopiridol against NSCLC, we examined the effect of 72 h of treatment with 100–500 nm flavopiridol on several NSCLC cell lines. Like the majority of NSCLCs, these express wild-type RB and lack p16INK4A, and most (except A549 cells) also lack functional p53. Here, we demonstrate that after prolonged exposure of 48–72 h, flavopiridol is cytotoxic to seven cell lines. Although some cell lines required a dose of 500 nm for significant cytotoxicity, most were sensitive at lower doses of flavopiridol, which are more easily achieved in vivo. At this dose range, shorter exposure to drug (i.e., 24 h) was insufficient to achieve equivalent cytotoxicity. In the majority of cell lines examined, cell death was preceded or accompanied by cell cycle arrest and occurred by p53-independent apoptosis.

Cell Culture.

NSCLC cell lines, including A549, Calu-1, SK-Lu-1, Calu-6, NCI-H520, NCI-H661, and SW900, were obtained from the American Type Culture Collection (Rockville, MD). Cells were maintained in DMEM supplemented with 10% bovine calf serum. All express RB and lack functional p16INK4A(3, 40, 41, 42, 43, 44). A549 cells express wild-type p53 (45). The p53 status of SW900 cells is not documented in the literature; in the remaining five cell lines, p53 is deleted or inactivated by mutation (45, 46, 47, 48).

Retroviral Infection.

PA317 packaging cell lines expressing the LXSN and LXSN16E6 amphotropic viruses were provided by Erik Espling and Denise Galloway (49, 50). Filtered viral supernatants, containing Polybrene at a final concentration of 4 μg/ml, were used to infect subconfluent A549 cells. After 48 h, cells were trypsinized and selected in G418 at 400 μg/ml; several colonies were isolated individually, and others were subsequently pooled and maintained in G418.

Drug Treatment.

Flavopiridol was provided by Dr. Edward A. Sausville of the Developmental Therapeutics Program, National Cancer Institute. A 50 mm stock of flavopiridol was prepared in DMSO and stored at −70°C. Drug was diluted in medium and used at final concentrations ranging from 100 to 2000 nm. Twenty-four to 30 h prior to treatment, cells were plated at a subconfluent density of ∼1 × 106/100-mm dish (A549, NCI-H520, and SW900), 2 × 106/100-mm dish (Calu-6), or 8 × 105/100-mm dish (Calu-1, NCI-H661). In all cases, untreated cells behaved identically to those treated with DMSO alone.

Western Blot Analysis.

Nonadherent and adherent cells (collected by trypsinization) were pooled or kept separated, depending on the experimental goals. Cell lysates were prepared in NP40 lysis buffer [50 mm Tris-HCl (pH 8.0), 150 mm NaCl, 1.0% NP40, and 1 mm phenylmethylsulfonyl fluoride]. Extracts were clarified by centrifugation, and protein concentrations were determined using the Bradford assay (Bio-Rad, Richmond, CA). Equivalent amounts (usually 100 μg) were subjected to SDS-PAGE. Gels were soaked in transfer buffer [10 mm 3-(cyclohexylamino)-1-propanesulfonic acid (pH 11.0) and 15% methanol], and protein was electrophoretically transferred to Immobilon-P membranes (Millipore, Danvers, MA). Nonspecific binding sites were blocked by incubation with Tris-buffered saline (TBS)/10% nonfat dried milk. Primary antibody incubations were carried out in TBS/1% dried milk using the following antibodies: anti-PARP C2-10 (PharMingen, San Diego, CA), anti-p53 DO-1, anti-p27 N-20, and anti-p27 C-19 (all from Santa Cruz Biotechnology, Santa Cruz, CA), and anti-p21Waf1 (Oncogene Research Products, Cambridge, MA or Transduction Laboratories, Lexington, Kentucky). Primary antibody dilutions were 1:1000 for all antibodies except anti-p21Waf1 (Oncogene Research Products), which was diluted at 1:200. Filters were washed with TBS/0.1% Tween 20, incubated with horseradish peroxidase-conjugated secondary antibody (Amersham, Arlington Heights, IL), washed again, developed with enhanced chemiluminescence substrate (Amersham) according to the manufacturer’s instructions, and exposed to X-ray film. Equal loading of extracts was confirmed using anti-tubulin (Sigma Chemical Co., St. Louis, MO) or anti-PTP1D (Transduction Laboratories).

Assessment of Cell Viability.

At the appropriate time after drug exposure, attached cells were released by trypsinization and combined with nonadherent cells. After centrifugation, cells were resuspended in PBS and treated with 0.2% trypan blue, and trypan blue-excluding cells were counted using a hemocytometer. Viable cell counts were always compared with the number of cells/dish at time 0 of flavopiridol treatment.

Fluorescence-activated Cell Sorting Analysis.

For analysis of DNA content, adherent cells were collected by trypsinization, combined with nonadherent cells, washed, and resuspended in 1 ml of PBS. An additional 1 ml of 80% ethanol was added, and cells were fixed overnight at 4°C. Fixed cells were centrifuged and resuspended in 0.5 ml of 500 μg/ml RNase A and incubated for 45 min at 37°C. Cells were centrifuged and resuspended in 1 ml of 69 μm PI in 38 mm sodium citrate and incubated at room temperature for a minimum of 30 min. Cells were analyzed for DNA content by flow cytometry. Both ModFit (Verity Software House, Topsham, ME) and CellQuest (Becton Dickinson, San Jose, CA) programs were used.

Detection of Apoptosis by Flow Cytometry.

A fluorescein apoptosis detection system was used (Promega, Madison, WI). Briefly, after drug treatment, adherent cells were released by trypsinization, combined with nonadherent cells, collected by centrifugation, rinsed, and resuspended in 0.5 ml of PBS. Cells were fixed by adding 5 ml of 1% methanol-free formaldehyde for 20 min on ice. Cells were collected by centrifugation, rinsed twice, and resuspended in 0.5 ml of PBS and added to 70% ice-cold ethanol. After ethanol fixation, cells were rinsed and resuspended in PBS, and 5 × 105 cells were transferred to a 15-ml conical tube. After centrifugation, the pellet was equilibrated in the manufacturer’s buffer and incubated with fluorescein-12 dUTP in the presence or absence of TdT for 90 min at 37°C, with protection from direct light exposure. The reaction was terminated by adding 1 ml of 20 mm EDTA. Cells were washed twice in PBS containing 5 mg/ml BSA and 0.1% Triton X-100, and the cell pellet was finally resuspended in 0.5 ml of PBS containing 5 μg/ml PI and 500 μg/ml RNase A. After a 30-min room temperature incubation in the dark, cells were analyzed by two-color flow cytometry.

Histone H1 Kinase Assays.

Cells were lysed for 1 h at 4°C in 50 mm HEPES (pH 7.2), 150 mm NaCl, 1 mm EDTA, 2.5 mm EGTA, 1 mm DTT, and 0.1% Tween 20 supplemented with 10% glycerol, 1 mm NaF, 0.5 mm sodium orthovanadate, 1 μg/ml aprotinin, 1 μg/ml leupeptin, 10 mm β-glycerophosphate, and 100 μg/ml phenylmethylsulfonyl fluoride. Lysates were clarified by centrifugation, and protein concentration was determined by Bradford assay. One mg of protein was precleared with rabbit IgG prior to immune precipitation using 1 μg of rabbit antiserum against cdk2. Immune precipitates were collected by using protein A-Sepharose beads equilibrated with lysis buffer containing 4% BSA. Beads were washed four times with lysis buffer and then twice with kinase buffer containing 50 mm HEPES (pH 7.2), 10 mm MgCl2, 5 mm MnCl2, and 1 mm DTT. After the final wash, 25 μl of kinase mix were added, consisting of kinase buffer with 20 μm ATP, 10 μCi of [γ-33P]ATP, and 1 μg of histone H1. Samples were incubated at 37°C for 30 min with occasional mixing, boiled in SDS-PAGE sample buffer, and fractionated by electrophoresis through 10% polyacrylamide gels. Proteins were electrophoretically transferred to Immobilon-P, and phosphorylated Histone H1 was visualized by autoradiography. Bands were quantitated using phosphorescence image analysis.

Flavopiridol Is Cytotoxic to A549 Cells.

Seventy-two h of continuous exposure to 200–500 nm flavopiridol resulted in cessation of A549 cell growth and a small amount of cell death during the first 48 h of treatment. This was followed by significant cell death during the last 24 h, when analyzed by trypan blue exclusion (Fig. 1), confirming an earlier report of the cytotoxic response of these cells. In contrast, cells treated with 100 nm flavopiridol continued to grow but at a slower rate than untreated cells. The IC50s at 24 and 72 h were 212 ± 100 nm and 126 ± 46 nm, respectively (mean ± SD of three experiments).

Cytotoxicity Occurs by Apoptosis in A549 Cells.

Flow cytometry was used to analyze the cell cycle distribution of flavopiridol-treated cells. Consistent with the initial inhibition of cell growth, 200–500 nm flavopiridol resulted in both G1 and G2 arrest, manifested by an increased G1 and G2-M content, decreased S phase content (data for 500 nm flavopiridol are shown in Fig. 2,A), and an inhibition of cdk2 activity (Fig. 2,B). This pattern was evident after 24 h and persisted over the 72 h of treatment. However, at later times, cells with a sub-G1 content appeared, correlating with cell death evaluated by trypan blue exclusion. A TUNEL assay indicated that the response of A549 cells to flavopiridol was apoptotic (Fig. 3,A). The percentage of TUNEL-positive cells was dose dependent and reached 48 ± 13% (mean ± SD of six experiments) after 72 h of treatment with 500 nm flavopiridol. In addition, time- and dose-dependent cleavage of PARP occurred, also diagnostic of apoptosis (51) in flavopiridol-treated cells (Fig. 3, B and C). Although detection of the Mr 85,000 PARP cleavage product in these cells required preparation of extracts made only from the nonadherent population after flavopiridol treatment, TUNEL assays performed on adherent cells confirmed that this population was also undergoing apoptotic cell death (Fig. 3 D).

Apoptosis Is p53-independent in A549 Cells.

Unlike the majority of NSCLC cell lines, A549 cells carry a wild-type p53 gene. Interestingly, flavopiridol exposure resulted in accumulation of p53 in treated cells (Fig. 4,A). In some experiments, p53 accumulation was maximal within the first 24 h. After treatment with 300 nm flavopiridol, a concomitant small increase in p21Waf1 was also seen (Fig. 4,B); however, at 500 nm, p21Waf1 levels fell dramatically with time (Fig. 4, A and B). This is most likely the result of cleavage of p21Waf1 during apoptosis. With antibodies directed against the NH2-terminal domain of p21Waf1, the expected cleavage product (52, 53, 54) was seen only in the nonadherent population (Fig. 4,C). p27Kip1 cleavage during flavopiridol-mediated apoptosis was also demonstrated in these cells (Fig. 4 D).

To determine whether the accumulation of p53 was required for flavopiridol-mediated apoptosis, the HPV16E6 oncoprotein was introduced into A549 cells by retroviral transfer. E6-expressing cells were incapable of G1 arrest after exposure to DNA-damaging agents, including γ-irradiation and Adriamycin (Fig. 5, A and B). After γ-irradiation, some cells were treated with nocodazole so that G1 content could be analyzed without the exit of cells from mitosis (50). E6 expression prevented p53 accumulation after DNA damage, although a small p53-independent increase in p21Waf1 occurred (Fig. 5,C). Taken together, the results are consistent with the abrogation of p53 function in E6-expressing cells. Although flavopiridol does not result in significant p53 accumulation in E6-expressing cells, they readily undergo apoptosis (Fig. 6), indicating that cell death is indeed p53 independent.

Apoptotic Cell Death Occurs in p53-deficient NSCLC Cell Lines.

To confirm that flavopiridol-mediated apoptosis is p53 independent, we analyzed the response of several lung cancer cell lines lacking wild-type p53 to 72 h of treatment with 100–500 nm drug. In Calu-1 (Fig. 7) and SK-LU-1 cells (not shown), as in A549 cells, cell cycle arrest clearly preceded cell death. Fig. 7, A and B, shows that over the first 48 h of treatment at doses of 400 and 500 nm, there is cessation of cell growth, followed by cell death during the last 24 h of treatment. Consistent with this, Fig. 7,C shows that in Calu-1 cells over the first 24 h, prior to significant cell death and at doses between 300 and 500 nm, there is an increase in cells with G1 and G2 contents and marked diminution of cells in S phase, consistent with G1 and G2 arrest. Cell cycle arrest persists and is followed by cell death at 72 h, as indicated by a dose-dependent increase in percentage of cells with a sub-G1 DNA content. The apoptotic response of these cells was confirmed by TUNEL assay and by demonstration of PARP cleavage (Fig. 7, D and E).

In contrast, in NCI-H661, Calu-6 (Fig. 8), and NCI-H520 cells (data not shown), cell death was more marked and apparent as early as 24 h at the highest doses (Fig. 8, A and B). In these cells, diminution in S phase accompanied apoptosis, without the same separation in time between cell cycle arrest and cell death, as was observed in Calu-1 cells (Fig. 8,C). Once again, apoptosis was confirmed by TUNEL assay and by demonstration of PARP cleavage (Fig. 8, D–F); in these cell lines, the Mr 85,000 PARP cleavage product was readily apparent in total and adherent cell extracts as well as nonadherent cell extracts. Finally, cleavage of p27Kip1 was also demonstrated, another target of caspases during apoptosis (Fig. 8 G).

In summary, cell death after flavopiridol treatment was a common outcome in p53-deficient NSCLC cell lines, with a dose and time-dependent decrease in viable cell number and increase in the percentage of apoptotic cells. IC50s are shown in Table 1.

SW900 Cells Undergo Apoptosis without Antecedent Cell Cycle Arrest.

In SW900 cells, both apoptosis and cell cycle arrest occurred but appeared unrelated (Fig. 9). For example, at 48 h, there is evidence of apoptosis at 500 nm flavopiridol, without apparent cell cycle arrest. The same is true at 72 h at 300 nm flavopiridol. These results demonstrate that flavopiridol-mediated cell cycle arrest need not occur prior to a cytotoxic response in lung cancer cell lines.

Maximal Cytotoxicity Requires Continued Exposure at Low Doses of Flavopiridol.

To determine whether prolonged continuous treatment was necessary to achieve apoptosis in NSCLC cell lines, cells were treated for 24 h only and collected after an additional 48 h (i.e., at the 72-h time point) and compared with those treated continuously for 72 h. Table 2 demonstrates that in A549 cells, after 24 h of treatment at doses <500 nm, recovery occurs such that cytotoxicity is markedly diminished compared with a 72-h continuous exposure to drug. At higher doses, including 1000 nm and above, cell death at the 72-h time point is similar whether cells have been treated continuously or only for 24 h. In contrast, in NCI-H661 (Table 3) and Calu-1 cells (data not shown), cytotoxicity was greater at all doses after 72 h of continuous exposure.

These experiments were extended to analyze even longer exposures to flavopiridol. At 72 h, flavopiridol was either continued, or drug was removed and replaced with drug-free medium for an additional 48 h. Analysis of samples at 120 h indicated that removal of drug at 72 h did not reverse the lethal effect of flavopiridol, and cells continued to die. Overall, 72 and 120 h of exposure produced comparable cytotoxicity when cells were analyzed at 120 h.

Cytotoxicity Occurs in Noncycling Cells.

In some cell lines, apoptosis clearly followed cell cycle arrest, suggesting that noncycling cells could undergo apoptosis. To further investigate this, A549 cells were arrested by starvation in 0.1% bovine calf serum and were either left untreated or treated with flavopiridol for an additional 72 h in low serum. Fig. 10 demonstrates that cell death can occur in cells arrested in G1 prior to treatment. The IC50 at 72 h in starved A549 cells was 195 nm, representing a 1.5-fold increase over that seen in exponentially growing cells.

We have shown that flavopiridol causes apoptotic cytotoxicity in a panel of NSCLC cell lines. This was demonstrated by time- and dose-dependent decreases in viable cell count by trypan blue exclusion and concomitant increases in the percentage of cells with a sub-G1 DNA content. Apoptosis was confirmed by TUNEL assays and by the demonstration of cleavage of known caspase targets, including PARP, p21Waf1, and p27Kip1. Flavopiridol-mediated cytotoxicity had been demonstrated previously in A549 cells. In that study, morphological hallmarks of apoptosis were not observed (35). In contrast, our data clearly indicate that both DNA fragmentation and caspase-mediated events occur in response to flavopiridol, indicating activation of an apoptotic pathway in these cells.

In contrast to flavopiridol, the flavonoid flavone does not result in p53 accumulation in A549 cells, although G1 arrest occurs because p21Waf1 is transcriptionally induced in a p53-independent manner (55). Other flavonoids have been shown to activate wild-type p53 in nontransformed cells, including apigenin, luteolin, and quercetin (56), and relatively low doses of apigenin result in p53-dependent increases in p21Waf1(57). p53 activation by flavonoids may be secondary to the formation of oxygen radicals or the inhibition of topoisomerase activity (56). Although flavopiridol does not inhibit topoisomerase activity (35, 36), p53 reproducibly accumulated after treatment of A549 cells. In addition, at 300 nm, a small increase in the level of p21Waf1 was observed. The accumulation of p53 after flavopiridol treatment may be cell type specific, because, for example, it was not observed in SUDHL-4 B-cell lymphoma cells, although this cell line had high baseline levels and was only treated for 24 h (36).

At high doses of other flavonoids, apoptosis was observed during 72 h of treatment; in the nontransformed cell types studied, apoptosis appeared to be p53 dependent (56), but among transformed cells, this was not necessarily the case (58). Despite the accumulation of p53 observed in A549 cells, the apoptosis mediated by flavopiridol is independent of p53 by two criteria: (a) HPV16E6-expressing and control wild-type p53-expressing A549 cells have a similar apoptotic response; and (b) apoptosis readily occurs in cell lines in which p53 is deleted or inactivated by mutation.

Several studies have now demonstrated the association of caspase-mediated cleavage of p21Waf1 and p27Kip1 with apoptosis (52, 53, 54). In several systems, it has been proposed that this would facilitate apoptosis by releasing cells from growth arrest or allowing cdk2 activation. Such a mechanism is most likely not operating after flavopiridol treatment, because cell death can follow cell cycle arrest, and continued cdk2 inhibition occurs during flavopiridol exposure. It may be that cleavage of p21Waf1 and p27Kip1 is a consequence, rather than a cause, of apoptosis.

The mechanism of p53-independent apoptosis mediated by flavopiridol remains to be elucidated. Although cdks are the known primary targets at the doses studied, other kinases, including protein kinase C and epidermal growth factor receptor tyrosine kinase, are inhibited at higher doses of flavopiridol (27). Although inhibition of cdks clearly mediates cell cycle arrest by flavopiridol, it is not yet proved whether cdk inhibition is the cause of the apoptotic response. In this regard, our data in SW900 cells suggest that cell cycle arrest and apoptosis need not be intimately linked, as has been reported in a B-cell lymphoma cell line (36). In addition, if cdks are the critical targets, it will be important to determine whether inhibition of one or several is necessary for apoptosis. The answer to these questions will require the generation of flavopiridol-resistant cell lines as well as cell lines overexpressing various wild-type or mutant cdks.

We have confirmed the ability of flavopiridol to induce cytotoxicity in noncycling cells. The ability of arrested cells to undergo cell death during flavopiridol exposure was evident in experiments in which cell cycle arrest (both in G1 and G2) clearly preceded the time at which maximal cell death occurred. In addition, TUNEL assays suggested that cell death was not confined to a particular phase of the cell cycle. Flavopiridol-mediated cytotoxicity of noncycling cells has been investigated previously in density-arrested A549 cells by two groups of investigators (35, 59). Although both groups found that density-arrested cells were not resistant to flavopiridol, one group reported that the IC50 in arrested cells was significantly higher. In our experiments, serum-starved cells could also undergo cell death in response to flavopiridol, with a 1.5-fold higher IC50. Experiments in both serum-starved NCI-H661 cells and density-arrested Calu-1 cells yielded similar results. Although these cells were clearly killed by flavopiridol, there was a trend suggesting decreased apoptosis (up to 2-fold) in the noncycling populations (data not shown).

In other cells, including NCI-H661, NCI-H520, and Calu-6 cells, a diminution in S phase accompanied the onset of apoptosis. Although cell cycle arrest and apoptosis could be occurring concomitantly, our data do not rule out the possibility that S-phase cells are preferentially dying and are more sensitive to flavopiridol-mediated apoptosis. Additional experiments, including simultaneous bromodeoxyuridine/TUNEL analyses, will be necessary to determine whether this is the case. In this regard, one lung cancer cell line, NCI-H23, has been reported to undergo a delay in S-phase traversal after flavopiridol, with more abrupt apoptosis, evident earlier than 24 h (60). The sensitivity of S-phase cells might explain why flavopiridol potentiates the activity of chemotherapeutic drugs capable of causing S-phase delay (61, 62).

Our data have implications for the clinical use of flavopiridol. The apoptotic response of NSCLC cells suggests promise for the efficacy of flavopiridol in lung cancer. However, it is noteworthy that significant apoptosis in vitro frequently requires doses of 300–500 nm, which are higher than median levels achieved in vivo when a 72-h continuous infusion is used at the maximal tolerated dose (200–300 nm; Ref.39). Our data suggest that if higher levels are achieved (i.e., >500 nm), a 24-h treatment may be acceptable. It is possible that higher doses of flavopiridol may be tolerated if the exposure is shorter. However, the data indicate that if levels >500 nm are not easily achieved, the 72-h continuous infusion is preferable to a shorter period of treatment. This schedule is presently in use in a Phase II trial for patients with advanced NSCLC.

The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

        
1

Supported by NIH Grant CA72573 and the Dunkin’ Donuts-sponsored “Rising Stars” Program at Dana-Farber Cancer Institute. B. J. R. is a Scholar of the Leukemia Society of America.

                
3

The abbreviations used are: cdk, cyclin-dependent kinase; NSCLC, non-small cell lung cancer; TUNEL, terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling; RB, retinoblastoma; TdT, terminal deoxynucleotidyl transferase; PARP, poly(ADP-ribose) polymerase; IC50, drug concentration that inhibits growth by 50%; PI, propidium iodide; PTP1D, protein-tyrosine phosphatase 1D (SH-PTP2).

Fig. 1.

Flavopiridol is cytotoxic to A549 cells. A, a representative experiment is shown in which cells were treated with flavopiridol at the indicated concentrations 24 h after plating. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, the data for 200–500 nm flavopiridol in A are expanded to more clearly demonstrate the decreased cell number between 48 and 72 h. C, combined data were generated from a minimum of three and a maximum of six experiments for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD.

Fig. 1.

Flavopiridol is cytotoxic to A549 cells. A, a representative experiment is shown in which cells were treated with flavopiridol at the indicated concentrations 24 h after plating. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, the data for 200–500 nm flavopiridol in A are expanded to more clearly demonstrate the decreased cell number between 48 and 72 h. C, combined data were generated from a minimum of three and a maximum of six experiments for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD.

Close modal
Fig. 2.

Cell cycle profiles and cdk2 activity of flavopiridol-treated A549 cells. A, at the indicated times after flavopiridol treatment, adherent and nonadherent cells were pooled, fixed, and stained with PI for flow cytometry. B, adherent and nonadherent cells were pooled and used for the preparation of lysates; cdk2 immune precipitates were subjected to kinase assays using histone H1 as substrate. As a control, kinase activity of a lysate from cells treated with DMSO for 24 h was measured after immune precipitation with either normal rabbit IgG or anti-cdk2. Bands were quantitated using phosphorescence image analysis.

Fig. 2.

Cell cycle profiles and cdk2 activity of flavopiridol-treated A549 cells. A, at the indicated times after flavopiridol treatment, adherent and nonadherent cells were pooled, fixed, and stained with PI for flow cytometry. B, adherent and nonadherent cells were pooled and used for the preparation of lysates; cdk2 immune precipitates were subjected to kinase assays using histone H1 as substrate. As a control, kinase activity of a lysate from cells treated with DMSO for 24 h was measured after immune precipitation with either normal rabbit IgG or anti-cdk2. Bands were quantitated using phosphorescence image analysis.

Close modal
Fig. 3.

Cytotoxicity occurs by apoptosis in flavopiridol-treated A549 cells. A, TUNEL assay demonstrates the incorporation of fluoresceinated dUTP in the presence of TdT in treated cells. Fluorescein intensity is on the X axis; PI intensity is on the Y axis. The sub-G1 population in cells treated with 500 nm flavopiridol shifts almost entirely from fluorescein negative to positive in the presence of TdT. NO RX, no treatment. B:left, cells were treated with 500 nm flavopiridol for the indicated times. Adherent and nonadherent cells were pooled and used for the preparation of cell lysates, which were subjected to Western blotting for PARP, demonstrating that levels of the intact Mr 116,000 protein decreased with time; right, as on the left, except separate lysates were prepared from adherent (A) and nonadherent (N) cells. The Mr 85,000 PARP cleavage product is detectable in extracts from nonadherent cells. Western blot analysis for PTP1D was also carried out to demonstrate equal loading of the cell lysates. C, lysates were prepared from untreated A549 cells (U) or from cells treated at the indicated doses of flavopiridol (nm) for 72 h, which had been separated into nonadherent (N) and adherent (A) populations, and subjected to Western blot analysis for PARP. The experiment demonstrates a dose-dependent increase in PARP cleavage at 72 h. D, A549 cells were treated with DMSO or 500 nm flavopiridol for 24 h, fixed, and analyzed in TUNEL assays. In the middle panel, adherent and nonadherent cells were pooled (very few nonadherent cells were present); in the right panel, only adherent cells were analyzed. In the entire population, 15% of the cells are fluorescein positive; in the adherent population, 12% of the cells are fluorescein positive, indicating that apoptosis can be detected in the adherent population at early times after flavopiridol treatment.

Fig. 3.

Cytotoxicity occurs by apoptosis in flavopiridol-treated A549 cells. A, TUNEL assay demonstrates the incorporation of fluoresceinated dUTP in the presence of TdT in treated cells. Fluorescein intensity is on the X axis; PI intensity is on the Y axis. The sub-G1 population in cells treated with 500 nm flavopiridol shifts almost entirely from fluorescein negative to positive in the presence of TdT. NO RX, no treatment. B:left, cells were treated with 500 nm flavopiridol for the indicated times. Adherent and nonadherent cells were pooled and used for the preparation of cell lysates, which were subjected to Western blotting for PARP, demonstrating that levels of the intact Mr 116,000 protein decreased with time; right, as on the left, except separate lysates were prepared from adherent (A) and nonadherent (N) cells. The Mr 85,000 PARP cleavage product is detectable in extracts from nonadherent cells. Western blot analysis for PTP1D was also carried out to demonstrate equal loading of the cell lysates. C, lysates were prepared from untreated A549 cells (U) or from cells treated at the indicated doses of flavopiridol (nm) for 72 h, which had been separated into nonadherent (N) and adherent (A) populations, and subjected to Western blot analysis for PARP. The experiment demonstrates a dose-dependent increase in PARP cleavage at 72 h. D, A549 cells were treated with DMSO or 500 nm flavopiridol for 24 h, fixed, and analyzed in TUNEL assays. In the middle panel, adherent and nonadherent cells were pooled (very few nonadherent cells were present); in the right panel, only adherent cells were analyzed. In the entire population, 15% of the cells are fluorescein positive; in the adherent population, 12% of the cells are fluorescein positive, indicating that apoptosis can be detected in the adherent population at early times after flavopiridol treatment.

Close modal
Fig. 4.

p53, p21Waf1, and p27Kip1 levels in A549 cells treated with flavopiridol. A, lysates from untreated cells or cells treated with 500 nm flavopiridol for the indicated times were analyzed by Western blotting for the presence of p53 and p21Waf1. B, lysates from untreated cells or those treated at 300 or 500 nm flavopiridol for 24 h were compared for levels of p21Waf1. The same lysates were subjected to Western blot analysis for tubulin to demonstrate equal loading. In A and B, adherent and nonadherent cells were pooled for the preparation of lysates from treated cells. C, two experiments in which lysates were prepared from either untreated cells (U), DMSO-treated cells (D), or from cells treated at 300 nm flavopiridol for 24 h (left) or 500 nm flavopiridol for 48 h (right). Adherent and nonadherent cells were separated prior to the preparation of lysates. In both experiments, the expected Mr 14,000 p21Waf1 cleavage product is demonstrated in nonadherent cells after treatment. D, similar experiment in which lysates were prepared from untreated cells (U) or from cells treated for 48 or 72 h. In extracts from the nonadherent populations (N), the expected Mr 22,000 p27Kip1 cleavage product is demonstrated with an antibody directed at the NH2 terminus and not the COOH terminus of p27Kip1.

Fig. 4.

p53, p21Waf1, and p27Kip1 levels in A549 cells treated with flavopiridol. A, lysates from untreated cells or cells treated with 500 nm flavopiridol for the indicated times were analyzed by Western blotting for the presence of p53 and p21Waf1. B, lysates from untreated cells or those treated at 300 or 500 nm flavopiridol for 24 h were compared for levels of p21Waf1. The same lysates were subjected to Western blot analysis for tubulin to demonstrate equal loading. In A and B, adherent and nonadherent cells were pooled for the preparation of lysates from treated cells. C, two experiments in which lysates were prepared from either untreated cells (U), DMSO-treated cells (D), or from cells treated at 300 nm flavopiridol for 24 h (left) or 500 nm flavopiridol for 48 h (right). Adherent and nonadherent cells were separated prior to the preparation of lysates. In both experiments, the expected Mr 14,000 p21Waf1 cleavage product is demonstrated in nonadherent cells after treatment. D, similar experiment in which lysates were prepared from untreated cells (U) or from cells treated for 48 or 72 h. In extracts from the nonadherent populations (N), the expected Mr 22,000 p27Kip1 cleavage product is demonstrated with an antibody directed at the NH2 terminus and not the COOH terminus of p27Kip1.

Close modal
Fig. 5.

Characterization of LXSN and HPV16E6-expressing A549 cells. Data are shown from a pooled population of cells after infection with either the control or E6-expressing retrovirus. A, LXSN and E6-expressing A549 cells were left untreated or treated with 0.4 μg/ml nocodazole for 18 h. Alternatively, cells were subjected to 10 Gy of γ-irradiation and allowed to grow for an additional 18 h in the presence or absence of 0.4 μg/ml nocodazole. Cells were collected by trypsinization, fixed, stained with PI, and analyzed by flow cytometry. Numbers indicate the percentage of cells in G1. B, LXSN and E6-expressing A549 cells were left untreated or treated with 0.05 μg/ml Adriamycin for 24 h and analyzed by flow cytometry. Numbers indicate the percentage of cells in G1. The experiments in A and B indicate the abrogation of the p53-mediated G1 arrest checkpoint after DNA damage in E6-expressing cells. No Rx, no therapy. C, lysates from untreated cells (U) or those treated with the indicated Adriamycin concentration (μg/ml) were subjected to Western blot analysis for p53, p21Waf1, and tubulin. Accumulation of p53 and p21Waf1 is inhibited in E6-expressing cells. A small amount of p53-independent accumulation of p21Waf1 after treatment with Adriamycin has been reported in other cell types (7).

Fig. 5.

Characterization of LXSN and HPV16E6-expressing A549 cells. Data are shown from a pooled population of cells after infection with either the control or E6-expressing retrovirus. A, LXSN and E6-expressing A549 cells were left untreated or treated with 0.4 μg/ml nocodazole for 18 h. Alternatively, cells were subjected to 10 Gy of γ-irradiation and allowed to grow for an additional 18 h in the presence or absence of 0.4 μg/ml nocodazole. Cells were collected by trypsinization, fixed, stained with PI, and analyzed by flow cytometry. Numbers indicate the percentage of cells in G1. B, LXSN and E6-expressing A549 cells were left untreated or treated with 0.05 μg/ml Adriamycin for 24 h and analyzed by flow cytometry. Numbers indicate the percentage of cells in G1. The experiments in A and B indicate the abrogation of the p53-mediated G1 arrest checkpoint after DNA damage in E6-expressing cells. No Rx, no therapy. C, lysates from untreated cells (U) or those treated with the indicated Adriamycin concentration (μg/ml) were subjected to Western blot analysis for p53, p21Waf1, and tubulin. Accumulation of p53 and p21Waf1 is inhibited in E6-expressing cells. A small amount of p53-independent accumulation of p21Waf1 after treatment with Adriamycin has been reported in other cell types (7).

Close modal
Fig. 6.

Flavopiridol-mediated apoptosis is unaffected by the abrogation of p53 function and p53 accumulation in E6-expressing A549 cells. A, LXSN and E6-expressing A549 cells (either the pooled population, E6-P, or an isolated clone, E6-clone 3, after infection with the E6-expressing retrovirus) were treated with DMSO or 500 nm flavopiridol for 72 h and analyzed by TUNEL assay and by flow cytometry. Numbers indicate the percentage of fluorescein-positive or percentage of sub-G1. No Rx, no therapy. B, data from four experiments were used to generate the graphs, indicating the percentage of fluorescein-positive cells in each population after 72 h of treatment with either DMSO or 500 nm flavopiridol. Bars, SD. C, cells were counted by trypan blue exclusion at time 0 (100%) or after 72 h of treatment with 500 nm flavopiridol; the data represent a compilation of five experiments. Bars, SD. D, lysates were prepared from untreated cells (U) or cells treated with DMSO or 500 nm flavopiridol for the indicated times and analyzed by Western blotting for p53 and tubulin. In the right panel, where data for the individual clone are shown, the LXSN lysate from cells treated with 500 nm flavopiridol for 72 h was electrophoresed on the same gel as lysates from E6-expressing cells.

Fig. 6.

Flavopiridol-mediated apoptosis is unaffected by the abrogation of p53 function and p53 accumulation in E6-expressing A549 cells. A, LXSN and E6-expressing A549 cells (either the pooled population, E6-P, or an isolated clone, E6-clone 3, after infection with the E6-expressing retrovirus) were treated with DMSO or 500 nm flavopiridol for 72 h and analyzed by TUNEL assay and by flow cytometry. Numbers indicate the percentage of fluorescein-positive or percentage of sub-G1. No Rx, no therapy. B, data from four experiments were used to generate the graphs, indicating the percentage of fluorescein-positive cells in each population after 72 h of treatment with either DMSO or 500 nm flavopiridol. Bars, SD. C, cells were counted by trypan blue exclusion at time 0 (100%) or after 72 h of treatment with 500 nm flavopiridol; the data represent a compilation of five experiments. Bars, SD. D, lysates were prepared from untreated cells (U) or cells treated with DMSO or 500 nm flavopiridol for the indicated times and analyzed by Western blotting for p53 and tubulin. In the right panel, where data for the individual clone are shown, the LXSN lysate from cells treated with 500 nm flavopiridol for 72 h was electrophoresed on the same gel as lysates from E6-expressing cells.

Close modal
Fig. 7.

Response of Calu-1 cells to flavopiridol. A, a representative experiment is shown in which cells were treated with the indicated doses of flavopiridol. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, viable cell counts from a minimum of two and a maximum of four experiments were used to generate the data for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD. C, cell cycle profiles of untreated Calu-1 cells and of cells treated at the indicated doses. The data demonstrate cell cycle arrest followed by the dose-dependent appearance of populations of cells with sub-G1 DNA content. D, TUNEL assays demonstrate that cytotoxicity occurs by apoptosis in Calu-1 cells. PI is on the Y axis and fluorescein is on the X axis. In the presence of TdT, the sub-G1 population is almost entirely fluorescein positive. In this experiment, 57% of the cells were fluorescein positive after treatment with 500 nm flavopiridol for 72 h. No Rx, no therapy. E, Calu-1 cells were left untreated or treated with 500 nm flavopiridol for 72 h. Extracts were prepared from untreated cells (U), adherent treated cells (A), or nonadherent treated cells (N). Lysates were subjected to Western blot analysis for PARP and PTP1D. In treated cells, the Mr 85,000 PARP cleavage product is detectable.

Fig. 7.

Response of Calu-1 cells to flavopiridol. A, a representative experiment is shown in which cells were treated with the indicated doses of flavopiridol. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, viable cell counts from a minimum of two and a maximum of four experiments were used to generate the data for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD. C, cell cycle profiles of untreated Calu-1 cells and of cells treated at the indicated doses. The data demonstrate cell cycle arrest followed by the dose-dependent appearance of populations of cells with sub-G1 DNA content. D, TUNEL assays demonstrate that cytotoxicity occurs by apoptosis in Calu-1 cells. PI is on the Y axis and fluorescein is on the X axis. In the presence of TdT, the sub-G1 population is almost entirely fluorescein positive. In this experiment, 57% of the cells were fluorescein positive after treatment with 500 nm flavopiridol for 72 h. No Rx, no therapy. E, Calu-1 cells were left untreated or treated with 500 nm flavopiridol for 72 h. Extracts were prepared from untreated cells (U), adherent treated cells (A), or nonadherent treated cells (N). Lysates were subjected to Western blot analysis for PARP and PTP1D. In treated cells, the Mr 85,000 PARP cleavage product is detectable.

Close modal
Fig. 8.

Response of NCI-H661 and Calu-6 cells to flavopiridol. A, a representative experiment is shown in which NCI-H661 cells were treated with the indicated doses of flavopiridol. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, NCI-H661 viable cell counts from a minimum of three and a maximum of eight experiments were used to generate the data for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD. C, cell cycle profiles of untreated NCI-H661 cells and of cells treated at the indicated doses. D and E, TUNEL assays demonstrate that cytotoxicity occurs by apoptosis in NCI-H661 and Calu-6 cells. PI is on the Y axis, and fluorescein is on the X axis. In the presence of TdT, the sub-G1 population is almost entirely fluorescein positive. In the NCI-H661 experiment, the percentage of fluorescein-positive cells at 48 and 72 h are 59 and 72%, respectively; in the Calu-6 experiment, 24% of the cells are fluorescein positive at 48 h. F, cells were either untreated or treated with 500 nm flavopiridol for 72 h. Extracts were prepared from untreated cells (U), pooled populations of adherent and nonadherent cells (T), adherent treated cells (A), or nonadherent treated cells (N). Lysates were subjected to Western blot analysis for PARP and PTP1D. The Mr 85,000 PARP cleavage product is detectable in all treated populations. G, similar experiment in NCI-H661 cells in which cleavage of p27Kip1 was analyzed with an antibody directed at the NH2 terminus.

Fig. 8.

Response of NCI-H661 and Calu-6 cells to flavopiridol. A, a representative experiment is shown in which NCI-H661 cells were treated with the indicated doses of flavopiridol. At 24, 48, and 72 h after treatment, adherent cells were collected by trypsinization and combined with nonadherent cells. Viable cell number was determined by trypan blue exclusion. B, NCI-H661 viable cell counts from a minimum of three and a maximum of eight experiments were used to generate the data for each condition. Percentages represent the number of viable cells remaining compared with the number of cells/dish at time 0 of flavopiridol treatment. Bars, SD. C, cell cycle profiles of untreated NCI-H661 cells and of cells treated at the indicated doses. D and E, TUNEL assays demonstrate that cytotoxicity occurs by apoptosis in NCI-H661 and Calu-6 cells. PI is on the Y axis, and fluorescein is on the X axis. In the presence of TdT, the sub-G1 population is almost entirely fluorescein positive. In the NCI-H661 experiment, the percentage of fluorescein-positive cells at 48 and 72 h are 59 and 72%, respectively; in the Calu-6 experiment, 24% of the cells are fluorescein positive at 48 h. F, cells were either untreated or treated with 500 nm flavopiridol for 72 h. Extracts were prepared from untreated cells (U), pooled populations of adherent and nonadherent cells (T), adherent treated cells (A), or nonadherent treated cells (N). Lysates were subjected to Western blot analysis for PARP and PTP1D. The Mr 85,000 PARP cleavage product is detectable in all treated populations. G, similar experiment in NCI-H661 cells in which cleavage of p27Kip1 was analyzed with an antibody directed at the NH2 terminus.

Close modal
Fig. 9.

Response of SW900 cells to flavopiridol. A, cell cycle profiles of untreated cells and of cells treated at the indicated doses. Cells with a sub-G1 DNA content appear without evidence of concomitant cell cycle arrest. No Rx, no therapy. B, TUNEL assays demonstrate that apoptosis occurs in SW900 cells. PI is on the Y axis, and fluorescein is on the X axis. At 72 h, the percentage of fluorescein-positive cells increases in a dose-dependent manner. No Rx, no therapy.

Fig. 9.

Response of SW900 cells to flavopiridol. A, cell cycle profiles of untreated cells and of cells treated at the indicated doses. Cells with a sub-G1 DNA content appear without evidence of concomitant cell cycle arrest. No Rx, no therapy. B, TUNEL assays demonstrate that apoptosis occurs in SW900 cells. PI is on the Y axis, and fluorescein is on the X axis. At 72 h, the percentage of fluorescein-positive cells increases in a dose-dependent manner. No Rx, no therapy.

Close modal
Fig. 10.

Flavopiridol is cytotoxic to serum-starved A549 cells. A549 cells were starved in 0.1% bovine calf serum for 72 h. Cells were then left untreated (left) or treated with 300 nm flavopiridol (right) in 0.1% bovine calf serum for an additional 72 h. At the conclusion of the experiment, adherent and nonadherent cells were pooled and analyzed by flow cytometry.

Fig. 10.

Flavopiridol is cytotoxic to serum-starved A549 cells. A549 cells were starved in 0.1% bovine calf serum for 72 h. Cells were then left untreated (left) or treated with 300 nm flavopiridol (right) in 0.1% bovine calf serum for an additional 72 h. At the conclusion of the experiment, adherent and nonadherent cells were pooled and analyzed by flow cytometry.

Close modal
Table 1

IC50s for flavopiridol-treated NSCLC cell lines

A549Calu-1NCI-H520NCI-H661SW900
IC50 24 h 212 ± 100a 369 565 306 ± 75  
IC50 72 h 126 ± 46 158 ± 44 114 184 ± 21 111 
A549Calu-1NCI-H520NCI-H661SW900
IC50 24 h 212 ± 100a 369 565 306 ± 75  
IC50 72 h 126 ± 46 158 ± 44 114 184 ± 21 111 
a

nm ± SD. Values without SD are the result of one experiment. Other values represent the average of two or three experiments.

Table 2

Percentage of apoptosis and viable cell number × 106 after treatment of A549 cells with flavopiridol

Low doses of flavopiridol require prolonged exposure to achieve maximal cytotoxicity in a representative experiment in A549 cells. Cells were treated with DMSO or the indicated doses. At time 0 of flavopiridol treatment, the cell count was 1.28 × 106 with <1% apoptosis.
T = 0: <1 (1.28)24/24a24/72b72/72c72/120d120/120e
DMSO <1 (3.63) <1 (12.6) <1 (15.6) <1 (ND)f 3 (ND) 
300 nm 3 (1.38) <1 (2.47) 27 (0.65) 12 (0.30) 58 (0.22) 
400 nm 3 (1.35) 3 (1.37) 38 (0.72) 62 (0.14) 61 (0.14) 
500 nm 2 (1.50) 30 (0.80) 42 (0.71) 56 (0.17) 60 (0.17) 
1000 nm 5 (1.43) 53 (0.55) 62 (0.65) 34 (0.12) 67 (0.19) 
1500 nm 4 (1.35) 57 (0.45) 50 (0.47) 33 (0.12) 53 (0.19) 
2000 nm 2 (1.03) 55 (0.39) 43 (0.39) 43 (0.18) 50 (0.12) 
Low doses of flavopiridol require prolonged exposure to achieve maximal cytotoxicity in a representative experiment in A549 cells. Cells were treated with DMSO or the indicated doses. At time 0 of flavopiridol treatment, the cell count was 1.28 × 106 with <1% apoptosis.
T = 0: <1 (1.28)24/24a24/72b72/72c72/120d120/120e
DMSO <1 (3.63) <1 (12.6) <1 (15.6) <1 (ND)f 3 (ND) 
300 nm 3 (1.38) <1 (2.47) 27 (0.65) 12 (0.30) 58 (0.22) 
400 nm 3 (1.35) 3 (1.37) 38 (0.72) 62 (0.14) 61 (0.14) 
500 nm 2 (1.50) 30 (0.80) 42 (0.71) 56 (0.17) 60 (0.17) 
1000 nm 5 (1.43) 53 (0.55) 62 (0.65) 34 (0.12) 67 (0.19) 
1500 nm 4 (1.35) 57 (0.45) 50 (0.47) 33 (0.12) 53 (0.19) 
2000 nm 2 (1.03) 55 (0.39) 43 (0.39) 43 (0.18) 50 (0.12) 
a

24/24, cells were treated for 24 h and collected at 24 h.

b

24/72, cells were treated for 24 h and collected at 72 h.

c

72/72, cells were treated for 72 h and collected at 72 h.

d

72/120, cells were treated for 72 h and collected at 120 h.

e

120/120, cells were treated for 120 h and collected at 120 h. At doses <500 nm, continuous exposure for 72 h produced more cytotoxicity than only 24 h of exposure; at doses >500 nm, 24 and 72 h of exposure are equivalent, if cells are analyzed at 72 h. Removal of drug at 72 h does not reverse flavopiridol-mediated cell death, and cytotoxicity continues and is even more marked after analysis at 120 h. (At doses of 1000 nm and above, the percentage of apoptosis does not significantly increase after 72 h, suggesting a nonapoptotic component of the continued cell death observed in these samples). The percentage of apoptosis was determined by TUNEL assay.

f

ND, not determined.

Table 3

Percentage of apoptosis after treatment of NCI-H661 cells with flavopiridol

Prolonged exposure produces a greater apoptotic response in a representative experiment in NCI-H661 cells. Cells were treated with DMSO or the indicated doses.
24/24a24/72b72/72c72/120d120/120e
DMSO <1 <1 <1 <1 10 
300 nm 15 <1 18 57 58 
400 nm 21 47 67 91 
500 nm 24 16 73 88 92 
1000 nm 31 26 80 NDf ND 
1500 nm 46 35 71 ND ND 
2000 nm 39 21 58 ND ND 
Prolonged exposure produces a greater apoptotic response in a representative experiment in NCI-H661 cells. Cells were treated with DMSO or the indicated doses.
24/24a24/72b72/72c72/120d120/120e
DMSO <1 <1 <1 <1 10 
300 nm 15 <1 18 57 58 
400 nm 21 47 67 91 
500 nm 24 16 73 88 92 
1000 nm 31 26 80 NDf ND 
1500 nm 46 35 71 ND ND 
2000 nm 39 21 58 ND ND 
a

24/24, cells were treated for 24 h and collected at 24 h.

b

24/72, cells were treated for 24 h and collected at 72 h.

c

72/72, cells were treated for 72 h and collected at 72 h.

d

72/120, cells were treated for 72 h and collected at 120 h.

e

120/120, cells were treated for 120 h and collected at 120 h. The percentage of apoptosis was determined by TUNEL assay. At all doses, there is more apoptosis after continuous treatment for 72 h, compared with treatment only for 24 h. In addition, flavopiridol-mediated cytotoxicity is not reversed when drug is removed at 72 h.

f

ND, not determined.

We thank Edward Sausville for helpful discussions and for the supply of flavopiridol used in these experiments. We also thank members of the Dana-Farber Cancer Institute Cell Sorter Facility, including Maris Handley, Joseph O’Brien, Jon Michael Vore, and Michael Price.

1
Meyerson M., Enders G. H., Wu C. L., Su L. K., Gorka C., Nelson C., Harlow E., Tsai L. H. A family of human cdc2-related protein kinases.
EMBO J.
,
11
:
2909
-2917,  
1992
.
2
Sherr C. J., Roberts J. M. Inhibitors of mammalian G1 cyclin-dependent kinases.
Genes Dev.
,
9
:
1149
-1163,  
1995
.
3
Otterson G. A., Kratzke R. A., Coxon A., Kim Y. W., Kaye F. J. Absence of p16INK4 protein is restricted to the subset of lung cancer lines that retains wildtype RB.
Oncogene
,
9
:
3375
-3378,  
1994
.
4
Shapiro G. I., Edwards C. D., Kobzik L., Godleski J., Richards W., Sugarbaker D. J., Rollins B. J. Reciprocal Rb inactivation and p16INK4 expression in primary lung cancers and cell lines.
Cancer Res.
,
55
:
505
-509,  
1995
.
5
El-Deiry W. S., Tokino T., Velculescu V. E., Levy D. B., Parsons R., Trent J. M., Lin D., Mercer W. E., Kinzler K. W., Vogelstein B. WAF1, a potential mediator of p53 tumor suppression.
Cell
,
75
:
817
-825,  
1993
.
6
Macleod K. F., Sherry N., Hannon G., Beach D., Tokino T., Kinzler K., Vogelstein B., Jacks T. p53-dependent and independent expression of p21 during cell growth, differentiation, and DNA damage.
Genes Dev.
,
9
:
935
-944,  
1995
.
7
Michieli P., Chedid M., Lin D., Pierce J. H., Mercer E., Givol D. Induction of Waf1/CIP1 by a p53-independent pathway.
Cancer Res.
,
54
:
3391
-3395,  
1994
.
8
Butz K., Geisen C., Ullmann A., Zentgraf H., Hoppe-Seyler F. Uncoupling of p21Waf1/Cip1/SDI1 mRNA and protein expression upon genotoxic stress.
Oncogene
,
17
:
781
-787,  
1998
.
9
Pagano M., Tam S. W., Thodoras A. M., Beer-Romero P., Del Sal G., Chau V., Yew P. R., Draetta G. F., Rolfe M. Role of the ubiquitin-proteasome pathway in regulating abundance of the cyclin-dependent kinase inhibitor p27.
Science (Washington DC)
,
269
:
682
-685,  
1995
.
10
Porter P. L., Malone K. E., Heagerty P. J., Alexander G. M., Gatti L. A., Firpo E. J., Daling J. R., Roberts J. M. Expression of cell-cycle regulators p27Kip1 and cyclin E, alone and in combination, correlate with survival in young breast cancer patients.
Nat. Med.
,
3
:
222
-225,  
1997
.
11
Catzavelos C., Bhattacharya N., Ung Y. C., Wilson J. A., Roncari L., Sandhu C., Shaw P., Yeger H., Morava-Protzer I., Kapusta L., Franssen E., Pritchard K. I., Slingerland J. M. Decreased levels of the cell-cycle inhibitor p27Kip1 protein: prognostic implications in primary breast cancer.
Nat. Med.
,
3
:
227
-230,  
1997
.
12
Loda M., Cukor B., Tam S. W., Lavin P., Fiorentino M., Draetta G. F., Jessup J. M., Pagano M. Increased proteasome-dependent degradation of the cyclin-dependent kinase inhibitor p27 in aggressive colorectal carcinomas.
Nat. Med.
,
3
:
231
-234,  
1997
.
13
Esposito V., Baldi A., De Luca A., Groger A. M., Loda M., Giordano G. G., Caputi M., Baldi F., Pagano M., Giordano A. Prognostic role of the cyclin-dependent kinase inhibitor p27 in non-small cell lung cancer.
Cancer Res.
,
57
:
3381
-3385,  
1997
.
14
Niculescu A. B., Chen X., Smeets M., Hengst L., Prives C., Reed S. I. Effects of p21Cip1/Waf1 at both the G1/S and G2/M cell cycle transitions: pRb is a critical determinant in blocking DNA replication and in preventing endoreduplication.
Mol. Cell. Biol.
,
18
:
629
-643,  
1998
.
15
Dulic V., Stein G. H., Far D. F., Reed S. I. Nuclear accumulation of p21Cip1 at the onset of mitosis: a role at the G2/M phase transition.
Mol. Cell. Biol.
,
18
:
546
-557,  
1998
.
16
Medema R. H., Herrera R. E., Lam F., Weinberg R. A. Growth suppression by p16INK4 requires functional retinoblastoma protein.
Proc. Natl. Acad. Sci. USA
,
92
:
6289
-6293,  
1995
.
17
Lukas J., Parry D., Aagaard L., Mann D. J., Bartkova J., Strauss M., Peters G., Bartek J. Retinoblastoma-protein-dependent cell-cycle inhibition by the tumour suppressor p16.
Nature (Lond.)
,
375
:
503
-506,  
1995
.
18
Polyak K., Waldman T., He T. C., Kinzler K. W., Vogelstein B. Genetic determinants of p53-induced apoptosis and growth arrest.
Genes Dev.
,
1996
:
1945
-1952,  
1996
.
19
Waldman T., Zhang Y., Dillehay L., Yu J., Kinzler K., Vogelstein B., Williams J. Cell-cycle arrest versus cell death in cancer therapy.
Nat. Med.
,
3
:
1034
-1036,  
1997
.
20
Stone S., Dayananth P., Kamb A. Reversible, p16-mediated cell cycle arrest as protection from chemotherapy.
Cancer Res.
,
56
:
3199
-3202,  
1996
.
21
Katayose Y., Kim M., Rakkar A. N. S., Li Z., Cowan K. H., Seth P. Promoting apoptosis: a novel activity associated with the cyclin-dependent kinase inhibitor p27.
Cancer Res.
,
57
:
5441
-5445,  
1997
.
22
Wang X., Gorospe M., Huang Y., Holbrook N. J. p27Kip1 overexpression causes apoptotic death of mammalian cells.
Oncogene
,
15
:
2991
-2997,  
1997
.
23
Schreiber M., Muller W. J., Singh G., Graham F. L. Comparison of the effectiveness of adenovirus vectors expressing cyclin kinase inhibitors p16INK4A, p18INK4C, p19INK4D, p21Waf/Cip1 and p27Kip1 in inducing cell cycle arrest, apoptosis and inhibition of tumorigenicity.
Oncogene
,
18
:
1663
-1676,  
1999
.
24
Meijer L. Chemical inhibitors of cyclin-dependent kinases.
Trends Cell Biol.
,
6
:
393
-397,  
1996
.
25
Park D. S., Farinelli S. E., Greene L. A. Inhibitors of cyclin-dependent kinases promote survival of post-mitotic neuronally differentiated PC12 cells and sympathetic neurons.
J. Biol. Chem.
,
271
:
8161
-8169,  
1996
.
26
Shibata Y., Nishimura S., Okuyama A., Nakamura T. p53-independent induction of apoptosis by cyclin-dependent kinase inhibition.
Cell Growth Differ.
,
7
:
887
-891,  
1996
.
27
Sedlacek H. H., Czech J., Naik R., Kaur G., Worland P., Losiewicz M., Parker B., Carlson B., Smith A., Senderowicz A., Sausville E. A. Flavopiridol (L86 8275; NSC 649890), a new kinase inhibitor for tumor therapy.
Int. J. Oncol.
,
9
:
1143
-1168,  
1996
.
28
Carlson B. A., Dubay M. M., Sausville E. A., Brizuela L., Worland P. J. Flavopiridol induces G1 arrest with inhibition of cyclin-dependent kinase (CDK)2 and CDK4 in human breast carcinoma cells.
Cancer Res.
,
56
:
2973
-2978,  
1996
.
29
Carlson B. A., Pearlstein R. A., Naik R. G., Sedlacedk H. H., Sausville E. A., Worland P. J. Inhibition of CDK2, CDK4 and CDK7 by flavopiridol and structural analogs.
Proc. Am. Assoc. Cancer Res.
,
37
:
A2897
1996
.
30
De Azevedo W. F., Mueller-Dieckmann H. J. M., Schulze-Gahmen U., Worland P., Sausville E., Kim S. H. Structural basis for specificity and potency of a flavonoid inhibitor of human CDK2, a cell cycle kinase.
Proc. Natl. Acad. Sci. USA
,
93
:
2735
-2740,  
1996
.
31
Kaur G., Stetler-Stevenson M., Sebers S., Worland P., Sedlacek H., Myers C., Czech J., Naik R., Sausville E. A. Growth inhibition with reversible cell cycle arrest of carcinoma cells by flavone L86-8275.
J. Natl. Cancer Inst.
,
84
:
1736
-1740,  
1992
.
32
Arguello F., Alexander M., Sterry J. A., Tudor G., Smith E. M., Kalavar N. T., Greene J. F., Koss W., Morgan C. D., Stinson S. F., Siford T. J., Alvord W. G., Klabansky R. L., Sausville E. A. Flavopiridol induces apoptosis of normal lymphoid cells, causes immunosuppression and has potent antitumor activity in vivo against human leukemia and lymphoma xenografts.
Blood
,
91
:
2482
-2490,  
1998
.
33
Drees M., Dengler W. A., Roth T., Labonte H., Mayo J., Malspeis L., Grever M., Sausville E. A., Fiebig H. H. Flavopiridol (L86-8275): selective antitumor activity in vitro and activity in vivo in prostate carcinoma cells.
Clin. Cancer Res.
,
3
:
273
-279,  
1997
.
34
Patel V., Senderowicz A. M., Pinto J. D., Igishi T., Raffeld M., Quintanilla-Martinez L., Ensley J. F., Sausville E. A., Gutkind J. S. Flavopiridol, a novel cyclin-dependent kinase inhibitor, suppresses the growth of head and neck squamous cell carcinomas by inducing apoptosis.
J. Clin. Investig.
,
102
:
1674
-1681,  
1998
.
35
Bible K. C., Kaufmann S. H. Flavopiridol: a cytotoxic flavone that induces cell death in noncycling A549 human lung carcinoma cells.
Cancer Res.
,
56
:
4856
-4861,  
1996
.
36
Parker B. W., Kaur G., Nieves-Neira W., Taimi M., Kohlhagen G., Shimizu T., Losiewicz M. D., Pommier Y., Sausville E. A., Senderowicz A. M. Early induction of apoptosis in hematopoietic cell lines after exposure to flavopiridol.
Blood
,
91
:
458
-465,  
1998
.
37
König A., Schwarz G. K., Mohammed R. M., Al-Katib A., Gabrilove J. The novel cyclin-dependent kinase inhibitor flavopiridol downregulates Bcl-2 and induces growth arrest and apoptosis in chronic B-cell leukemia lines.
Blood
,
90
:
4307
-4312,  
1997
.
38
Schrump D. S., Matthews W., Chen G. A., Mixon A., Altorki N. K. Flavopiridol mediates cell cycle arrest and apoptosis in esophageal cancer cells.
Clin. Cancer Res.
,
4
:
2885
-2890,  
1998
.
39
Senderowicz A. M., Headlee D., Stinson S. F., Lush R. M., Kalil N., Villalba L., Hill K., Steinberg S. M., Figg W. D., Tompkins A., Arbuck S. G., Sausville E. A. Phase I trial of continuous infusion flavopiridol, a novel cyclin-dependent kinase inhibitor, in patients with refractory neoplasms.
J. Clin. Oncol.
,
16
:
2986
-2999,  
1998
.
40
Shimizu E., Coxon A., Otterson G. A., Steinberg S. M., Kratzke R. A., Kim Y. W., Fedorko J., Oie H., Johnson B. E., Mulshine J. L., Minna J. D., Gazdar A. F., Kaye F. J. RB protein status and clinical correlation from 171 cell lines representing lung cancer, extrapulmonary small cell carcinoma, and mesothelioma.
Oncogene
,
9
:
2441
-2448,  
1994
.
41
Okamoto A., Demetrick D. J., Spillare E. A., Hagiwara K., Hussain S. P., Bennett W. P., Forrester K., Gerwin B., Serrano M., Beach D. Mutations and altered expression of p16INK4 in human cancer.
Proc. Natl. Acad. Sci. USA
,
91
:
11045
-11049,  
1994
.
42
Okamoto A., Hussain S. P., Hagiwara K, Spillare, E., Rusin M. R., Demetrick D. J., Serrano M., Hannon G. J., Shiseki M., Zariwala M., Xiong Y, Beach, D. H., Yokota J., Harris C. C. Mutations in the p16INK4/MTS1/CDKN2, p15INK4B/MTS2, and p18 genes in primary and metastatic lung cancer.
Cancer Res.
,
55
:
1448
-1451,  
1995
.
43
de Vos S., Miller C. W., Takeuchi S., Gombart A. F., Cho S. K., Koeffler H. P. Alterations of CDKN2 (p16) in non-small cell lung cancer.
Genes Chromosomes Cancer
,
14
:
164
-170,  
1995
.
44
Shapiro G. I., Park J. E., Edwards C. D., Mao L., Sidransky D., Ewen M. E., Rollins B. J. Multiple mechanisms of p16INK4A inactivation in non-small cell lung cancer cell lines.
Cancer Res.
,
55
:
6200
-6209,  
1995
.
45
Lehman T. A., Bennett W. P., Metcalf R. A., Welsh J. A., Ecker J., Modali R. V., Ullrich S., Romano J. W., Appella E., Testa J. R., Gerwin B. I., Harris C. C. p53 mutations, ras mutations, and p53-heast shock 70 protein complexes in human lung carcinoma cell lines.
Cancer Res.
,
51
:
4090
-4096,  
1991
.
46
Caamano J., Ruggeri B., Momiki S., Sickler A., Zhang S. Y., Klein-Szanto A. J. Detection of p53 in primary lung tumors and non-small cell lung carcinoma cell lines.
Am. J. Pathol.
,
139
:
839
-845,  
1991
.
47
Mitsudomi T., Steinberg S. M., Nau M. M., Carbone D., D’Amico D., Bodner S., Oie H. K., Linnoila R. I., Mulshine J. L., Minna J. D., Gazdar A. F. p53 gene mutations in non-small cell lung cancer cell lines and their correlation with the presence of ras mutations and clinical features.
Oncogene
,
7
:
171
-180,  
1992
.
48
Loprevite M., Varesco L., Favoni R., Ferrara G. B., Moro F., Ottaggio L., Fronza G., Campomenosi P., Abbondandolo A., Cutrona G., Roncella S., Albini A., Aluigi M. G., Pozzi S., Pera C., Biticchi R., Gismondi V., Grossi F., Pennucci M. C., Ardizzoni A. Analysis of K-ras, p53, bcl-2 and Rb expression in non-small cell lung cancer cell lines.
Int. J. Oncol.
,
11
:
1203
-1208,  
1997
.
49
Halbert C. I., Demers G. W., Galloway D. A. The E7 gene of human papillomavirus type 16 is sufficient for immortalization of human epithelial cells.
J. Virol.
,
65
:
473
-478,  
1991
.
50
Russell K. J., Wiens L. W., Demers G. W., Galloway D. A., Plon S. E., Groudine M. Abrogation of the G2 checkpoint in differential radiosensitization of G1 checkpoint-deficient and G1 checkpoint-competent cells.
Cancer Res.
,
55
:
1639
-1642,  
1995
.
51
Kaufmann S. H., Desnoyers S., Ottaviano Y., Davidson N. E., Poirier G. G. Specific proteolytic cleave of poly (ADP-ribose) polymerase: an early marker of chemotherapy-induced apoptosis.
Cancer Res.
,
53
:
3976
-3985,  
1993
.
52
Gervais J. L. M., Seth P., Zhang H. Cleavage of cdk inhibitor p21Cip1/Waf1 by caspases is an early event during DNA damage-induced apoptosis.
J. Biol. Chem.
,
273
:
19207
-19212,  
1998
.
53
Levkau B., Koyama H., Raines E. W., Clurman B. E., Herren B., Orth K., Roberts J. M., Ross R. Cleavage of p21Cip1/Waf1 and p27Kip1 mediates apoptosis in endothelial cells through activation of cdk2: role of a caspase cascade.
Mol. Cell
,
1
:
553
-563,  
1998
.
54
Zhang Y., Fujita N., Tsuruo T. Caspase-mediated cleavage of p21Cip1/Waf1 converts cancer cells from growth arrest to undergoing apoptosis.
Oncogene
,
18
:
1131
-1138,  
1999
.
55
Bai F., Matsui T., Ohtani-Fujita N., Matsukawa Y., Ding Y., Sakai T. Promoter activation and following induction of the p21/WAF1 gene by flavone is involved in G1 phase arrest in A549 lung adenocarcinoma cells.
FEBS Lett.
,
437
:
61
-64,  
1998
.
56
Plaumann B., Fritsche M., Rimpler H., Brandner G., Hess R. D. Flavonoids activate wild-type p53.
Oncogene
,
13
:
1605
-1614,  
1996
.
57
Lepley D. M., Pelling J. C. Induction of p21/WAF1 and G1 cell-cycle arrest by the chemopreventive agent apigenin.
Mol. Carcinog.
,
19
:
74
-82,  
1997
.
58
Wei Y., Zhao X., Kariya Y., Fukata H., Teshigawara K., Uchida A. Induction of apoptosis by quercetin: involvement of heat shock protein.
Cancer Res.
,
54
:
4952
-4957,  
1994
.
59
Brüsselbach S., Nettelbeck D. M., Sedlacek H. H., Müller R. Cell cycle-independent induction of apoptosis by the anti-tumor drug flavopiridol in endothelial cells.
Int. J. Cancer
,
77
:
146
-152,  
1998
.
60
Kaur G., Hursey M., Sausville E. A. Cell cycle arrest and apoptosis in NSCLC cell lines by cyclin-dependent kinase inhibitor, flavopiridol.
Proc. Am. Assoc. Cancer Res.
,
39
:
A4118
1998
.
61
Bible K. C., Kaufmann S. H. Cytotoxic synergy between flavopiridol and various antineoplastic agents: the importance of sequence of administration.
Cancer Res.
,
57
:
3375
-3380,  
1997
.
62
Schwartz G. K., Farsi K., Maslak P., Kelsen D. P., Spriggs D. Potentiation of apoptosis by flavopiridol in mitomycin C-treated gastric and breast cancer cells.
Clin. Cancer Res.
,
3
:
1467
-1472,  
1997
.