Genes encoding for isocitrate dehydrogenases 1 and 2, IDH1 and IDH2, are frequently mutated in multiple types of human cancer. Mutations targeting IDH1 and IDH2 result in simultaneous loss of their normal catalytic activity, the production of α-ketoglutarate (α-KG), and gain of a new function, the production of 2-hydroxyglutarate (2-HG). 2-HG is structurally similar to α-KG, and acts as an α-KG antagonist to competitively inhibit multiple α-KG–dependent dioxygenases, including both lysine histone demethylases and the ten-eleven translocation family of DNA hydroxylases. Abnormal histone and DNA methylation are emerging as a common feature of tumors with IDH1 and IDH2 mutations and may cause altered stem cell differentiation and eventual tumorigenesis. Therapeutically, unique features of IDH1 and IDH2 mutations make them good biomarkers and potential drug targets. Clin Cancer Res; 18(20); 5562–71. ©2012 AACR.

Altered metabolic regulation in tumor cells was observed more than 80 years ago. Tumor cells, despite having an increased uptake of glucose, produce much less ATP than expected from complete oxidative phosphorylation and accumulate a significant amount of lactate (1–3). This phenomenon, representing arguably the first molecular phenotype characterized in cancer, is commonly known as Warburg Effect. The Warburg Effect's most notable clinical application is in 2[18F]fluoro-2-deoxy-d-glucose-positron emission tomography (FDG-PET), where it provides the theoretical basis for the detection of tumors because of their increased glucose uptake relative to surrounding normal tissues. Despite its long history and broad clinical application, however, relatively little progress has been made over past 4 decades in understanding how altered metabolic regulation contributes to tumorigenesis. This is largely because of the fact that cancer research during this period has focused on genetic mutations in human cancer that, until very recently, were not known to include metabolic enzymes. The recent discovery of mutations targeting metabolic genes in cancer has renewed interest in cancer metabolism. Eight genes: FH, SDHA, SDHB, SDHC, SDHD, SDHAF2, IDH1, and IDH2, encoding for 4 different metabolic enzymes: fumurate hydratase (FH), succinate dehydrogenase (SDH), and isocitrate dehydrogenase 1 and 2 (IDH1 and IDH2) are frequently mutated. These mutations are both germinal and somatic, and occur in a wide range of human cancers (4). In this review, we will focus the discussion on the mechanisms and the translational research of IDH1 and IDH2, 2 of the most frequently mutated metabolic genes in human cancer.

IDH1 and IDH2 genes are mutated in gliomas, acute myeloid leukemia, and multiple other types of human cancers

The mutation targeting IDH1 was first discovered in 2008 by a cancer genome project that systematically sequenced 20,661 genes in 22 human glioblastoma multiforme (GBM) samples and discovered 5 instances same heterozygous Arg132-to-His (R132H) point mutation (5). This finding was quickly confirmed by multiple studies through directed sequencing of IDH1 and its homologue IDH2 which cumulatively established that IDH1 or, less frequently, IDH2 genes are mutated in more than 75% of grade 2 to 3 gliomas and secondary glioblastomas (6–15). A separate cancer genome project in 2009 compared the genomes from tumor and normal cells in an individual patient with acute myeloid leukemia (AML) and identified a mutation in the IDH1 gene that was subsequently found in additional AML samples (16). Further directed sequencing established that the IDH1 or IDH2 genes are mutated in close to 20% of AML (17–24). Following the discovery in glioma and AML, mutations targeting IDH1 and IDH2 genes were found in multiple additional types of human tumors, including thyroid carcinomas (16%; refs. 25, 26), cartilaginous tumor (75%; refs. 27–29), intrahepatic cholangiocarcinoma (10% to 23%; refs. 30, 31), as well as several other types of tumors at lower frequency (refs. 31–34; Table 1).

Table 1.

IDH1 and IDH2 mutations in multiple human solid tumors

IDH1 and IDH2 mutations in multiple human solid tumors
IDH1 and IDH2 mutations in multiple human solid tumors

IDH1 and IDH2 mutations exhibit distinct biochemical and clinical features

Mutations targeting IDH1 and IDH2 genes in different types of tumors share 4 distinct biochemical features. First, IDH1 and IDH2 mutations in tumors are predominantly somatic and rarely germline (35). Second, all tumors with IDH1/2 mutations are heterozygous. This is consistent with both a gain of function and dominant effect over the remaining wild-type allele. Third, nearly all IDH1/2 mutations cause a single amino acid substitution, Arg132 in IDH1 (to 1 of 6 amino acid residues—His, Cys, Leu, Ile, Ser, Gly, and Val), or corresponding Arg172 in IDH2 (to 1 of 4 different residues—Lys, Met, Gly, and Trp), and Arg140 in IDH2 to either Gln or Trp. These 3 residues are located in the enzymes' active sites, suggesting a direct impact of mutation on the catalytic properties of the enzymes. Infrequently IDH1 mutations also include R100A in adult glioma, and G97D in colon cancer cell lines and a pediatric glioblastoma line (36). Finally, IDH1 and IDH2 mutations occur in a mutually exclusive manner in most cases, indicating a common underlying biochemical mechanism and physiologic consequence. Only rarely, individual tumors have been found to sustain mutations in both the IDH1 and IDH2 genes (8).

Mutations targeting IDH1 and IDH2 genes also exhibit 3 distinct clinical features. First, they occur in a highly restricted tumor spectrum. For example, they occur frequently in grade 2 to 3 gliomas and secondary glioblastomas, but not in primary GBM. Similarly, they are frequently found in cytogenetically normal AML, but not other subtypes of AML. This pattern suggests that the contribution of IDH1/2 mutations to tumorigenesis may be linked to cell fate determination at a specific stage of stem or progenitor cell differentiation. Second, IDH1/2 mutations occur at an early stage of tumorigenesis, and represent the earliest known mutation in glioma. This is consistent with the notion that IDH1/2 mutations may impair cell fate determination and subsequent differentiation. Finally, in glioma (13), AML (37), and intrahepatic cholangiocarcinoma (37) where a sufficient number of samples have been analyzed, IDH1 or IDH2 mutations alone or in combination with other gene mutations (in the case of AML) are associated with better prognosis. These findings, together with results showing that ectopic expression of tumor-derived mutant IDH1 reduces the proliferation of established glioma cells in vitro (38, 39), suggest that mutant IDH enzymes, although promoting tumorigenesis in the long run, may also cause growth inhibition resulting from 2-HG toxicity.

These unique properties of IDH1/2 mutations not only raise important mechanistic, biologic, and clinical questions about the role of this metabolic pathway in tumorigenesis, but also provide a unique opportunity to develop a strategy for therapeutic intervention.

Mutant IDH1 and IDH2 lose their normal activity to produce α-KG and gain a new activity producing 2-HG

The first biochemical alteration that is associated with tumor-derived IDH1 or IDH2 mutants is the loss of their normal activity in catalyzing the NADP+-dependent oxidative decarboxylation of isocitrate into α-ketoglutarate (α-KG, also known as 2-oxyglutarate or 2OG) and NADPH (Fig. 1; refs. 13, 40). In cultured cells, ectopic expression of tumor-derived IDH1 mutant was found to result in inhibition of the activity of prolyl hydroxylase (PHD), a member of the α-KG–dependent dioxygenase family of enzymes (see below), which can be restored by feeding cells with cell-permeable α-KG (40). This finding provided early evidence linking the mutation in IDH1 or IDH2 to the function of a specific metabolite, α-KG.

Figure 1.

Chemical reactions catalyzed by the wild-type IDH enzymes and tumor-derived IDH1/2 mutants. The only structural difference between α-KG and D-2-HG is the replacement of the 2-ketone group in α-KG by a hydroxyl group in 2-HG and is indicated in red.

Figure 1.

Chemical reactions catalyzed by the wild-type IDH enzymes and tumor-derived IDH1/2 mutants. The only structural difference between α-KG and D-2-HG is the replacement of the 2-ketone group in α-KG by a hydroxyl group in 2-HG and is indicated in red.

Close modal

A subsequent study found that, surprisingly, the mutant IDH1 not only abolished its normal activity, but also gained a new function: catalyzing the α-KG to D-2-hydroxyglutarate (D-2-HG, also known as R-2-HG; ref. 41; Fig. 1). Further studies found that all of the tumor-derived IDH2 mutants targeting either Arg140 or Arg172 also gained this new activity (42–44). In addition to glioma and AML, the accumulation of D-2-HG has been confirmed in enchondroma (45), indicating a cell-autonomous nature to the 2-HG production and accumulation in IDH1/2-mutated cells. Astonishingly, D-2-HG accumulates to as high as 5 to 35 μmol/g (or 5–35 mmol/L) in the case of gliomas. Taking advantage of these high metabolite levels, efforts are currently underway to develop magnetic resonance spectroscopy (MRS) techniques to noninvasively detect the accumulation of D-2-HG in glioma patients (46–50). This MRS-based brain imaging for D-2-HG is still very experimental, and is not yet ready for routine clinical application.

Beside mutant IDH1/2, there are several additional enzymes in mammalian cells, such as 2-hydroxyglutarate dehydrogenase, hydroxyacid-oxoacid transhydrogenase, and L-malate dehydroxygenase, which are also involved in 2-HG metabolism, suggesting the possibility that their alteration could lead to 2-HG accumulation as well (51–54). L-2HG and D-2HG aciduria (L-2HGA and D-2HGA) are autosomal recessive neurometabolic disorders which were first described in 1980. They are characterized by the significant elevation (by 10- to 100-folds) of urinary levels of D-2-HG or L-2-HG (55, 56). D-2HGA is rare, with symptoms including epilepsy, hypotonia, and psychomotor retardation. L-2HGA is more prevalent and severe, and mainly affects the central nervous system in infancy leading to progressive hypotonia, tremors, epilepsy, leukoencepalopathy, mental retardation, psychomotor regression, and occasionally brain tumors (57).

IDH1 and IDH2 enzymes produce NADPH and α-KG

The IDH family includes 3 distinct enzymes in human cells: IDH1, IDH2, and IDH3. All the 3 enzymes catalyze the same enzymatic reaction: oxidative decarboxylation of isocitrate to produce α-KG, but each has its own unique features (Fig. 1). IDH1 is located in the cytosol and the peroxisomes, whereas IDH2 and IDH3 are located in the mitochondria. IDH1 and IDH2 use NADP+, whereas IDH3 uses NAD+ as electron acceptors to produce NADPH or NADH, respectively. While both IDH1 and IDH2 form a homodimer, IDH3 is a heterotetrameric enzyme formed by 2 α subunits, 1 β subunit, and 1 γ subunit and is the principle IDH enzyme involved in the tricarboxylic acid (TCA) cycle. Mutations have thus far only been found to target either IDH1 or IDH2 genes in human tumors, but not IDH3. The basis for this prevalence is not entirely clear, but likely relates to the facts that loss of function of IDH3, unlike that of IDH1 and IDH2, may be detrimental to cell growth because of disruption of the TCA cycle. In addition, Arg132, which is conserved in both IDH1 and IDH2 and is the principle site of mutation, is not conserved in any of the 3 IDH3 subunits.

Two products of IDH1 and IDH2 enzymes, NADPH and α-KG, play broad functions in cell regulation. NADPH is involved in many cellular processes including defense against oxidative stress, fatty acid synthesis, and cholesterol biosynthesis. As reducing oxidative stress and increasing fatty acid synthesis are required for cell division, NADPH is an important metabolite for the proliferation of both normal and tumor cells. IDH1 mutation was previously found to result in lowered NADPH tissue levels (58), although no difference in NADPH levels was observed in another study (59). Whether reduced NADPH production by the mutations targeting IDH1/2 causes decreased cell proliferation, thus contributing to relatively slower tumor growth, or is being compensated by the increased activity of other NADPH producing enzymes has not been determined.

α-KG plays critical roles in 4 different metabolic and cellular pathways. First, α-KG is a key intermediate in the TCA/Krebs cycle for energy metabolism. Second, α-KG is an entry point for several 5-carbon amino acids (Arg, Glu, Gln, His, and Pro) to enter the TCA by GDH after they are first converted into glutamate. Metabolism of glutamate to α-KG is a major step in anaplerosis whereby TCA cycle intermediates are replenished after being extracted for biosynthesis. Third, α-KG can be reduced back to isocitrate and then citrate for the eventual synthesis of acetyl CoA, the central precursor for fatty acid synthesis and protein acetylation. Recent studies have shown that α-KG can be reductively carboxylated by the NADPH-linked cytosolic IDH1 or mitochondrial IDH2 to form isocitrate that can then be isomerized to citrate (60, 61) under hypoxic conditions (62). These findings support the notion that IDH1 and IDH2 are bidirectional enzymes under physiologic conditions that can both produce and consume α-KG to meet cellular demands. Fourth, α-KG is used as a cosubstrate for multiple α-KG–dependent dioxygenases involved in the hydroxylation of various protein and nucleic acid substrates (Fig. 2). This last function of α-KG, although less known, is emerging as the main target of IDH1 and IDH2 mutations in human tumors.

Figure 2.

Production and utilization of α-KG in human cells. Four enzymes—IDH1, IDH2, IDH3, and GDH—can produce α-KG, which is used for 4 separate pathways: TCA cycle, anaplerosis, fatty acid synthesis, and protein and nucleic acid hydroxylation. Red colored arrows indicate reducing reactions catalyzed by either IDH1 or IDH2. 5Caa, 5-carbon amino acids.

Figure 2.

Production and utilization of α-KG in human cells. Four enzymes—IDH1, IDH2, IDH3, and GDH—can produce α-KG, which is used for 4 separate pathways: TCA cycle, anaplerosis, fatty acid synthesis, and protein and nucleic acid hydroxylation. Red colored arrows indicate reducing reactions catalyzed by either IDH1 or IDH2. 5Caa, 5-carbon amino acids.

Close modal

α-KG–dependent dioxygenases hydroxylate diverse substrates and regulate many cellular pathways

Dioxygenases (also known sometimes as oxygen transferases) refer to the enzymes that incorporate both atoms of molecular oxygen (O2) into their substrates. Dioxygenases whose activity requires Fe(II) and α-KG as cofactors are often referred to as Fe(II)- and α-KG–dependent dioxygenases. In the reactions catalyzed by these enzymes, both α-KG and O2 can be considered to be cosubstrates with 1 oxygen atom being attached to a hydroxyl group in the substrate (hydroxylation) and the other taken up by α-KG leading to the decarboxylation of α-KG and subsequent release of carbon dioxide (CO2) and succinate (Fig. 3).

Figure 3.

α-KG–dependent dixoygenases hydroxylate diverse substrates. Greater than 60 α-KG–dependent dixoygenases are estimated to be present in human cells. They hydroxylate many different substrates, including proteins, DNA, and RNA.

Figure 3.

α-KG–dependent dixoygenases hydroxylate diverse substrates. Greater than 60 α-KG–dependent dixoygenases are estimated to be present in human cells. They hydroxylate many different substrates, including proteins, DNA, and RNA.

Close modal

The first identified α-KG–dependent dioxygenase was collagen prolyl hydroxylase, discovered in 1967 (63). After this pioneering work, the α-KG–dependent dioxygenases have been established as a widely distributed and continuously expanding family. The most notable new addition is the ten-eleven translocation (TET) family of DNA hydroxylases (64). The α-KG–dependent dioxygenases are present in all living organisms and catalyze hydroxylation reactions on a diverse set of substrates. They are involved in various pathways involving collagen, histones, and transcription factors, alkylated DNA and RNA, lipids, antibiotics, and the recently discovered 5-methylcytosine of genomic DNA and 6-methyadennine of RNA (refs. 65, 66; Fig. 3). It is estimated that there are more than 60 α-KG–dependent dioxygenases in humans based on sequence homology at the active site (67). As the result of such a broad spectrum of substrates, the change in the activity of α-KG–dependent dioxygenases resulting from IDH1/2 mutation is expected to potentially affect multiple cellular pathways.

2-HG is structurally similar to and acts as an antagonist of α-KG

The catalytic core of α-KG–dependent dioxygenases consists of a conserved double-stranded β-helix fold (67, 68). In the active site of Fe(II)/α-KG–dependent dioxygenases, α-KG uses 2 oxygen atoms from the α-keto carboxyl end—1 from its C-1 carboxylate and 1 from C-2 ketone—to coordinate Fe(II) and 2 oxygen atoms linked to C-5 at the acetate end to interact with conserved residues in the dioxygenases. Both enantiomers of 2-HG are similar in structure to α-KG with the exception of the oxidation state on C-2 whereby the 2-ketone group in α-KG is replaced by a hydroxyl group in 2-HG. This suggests that 2-HG may act as a competitive antagonist of α-KG to interfere with the function of α-KG–dependent dioxygenases (Fig. 1). This hypothesis was experimentally shown for multiple α-KG–dependent dioxygenases, in particular histone lysine demethylases (KDMs) and the TET family of DNA hydroxylases both in vitro and in vivo (42, 69). In gliomas with IDH1 mutation, both histone and DNA methylation are higher than those in gliomas with wild-type IDH1. Perhaps the most direct evidence supporting this hypothesis was a structural analysis that showed 2-HG bonding to the catalytic core of α-KG–dependent dioxygenases and adopted a nearly identical orientation as α-KG, thereby preventing the binding of α-KG to the enzyme active site (42, 69).

α-KG–dependent histone and DNA demethylases are two main targets of IDH mutations

Not all α-KG–dependent dioxygenases are expected to be inhibited equally by 2-HG. The ones which have higher affinities with 2-HG would be more sensitive to the accumulation of 2-HG in IDH1/2 mutated cells. In fact, Chowdhury and colleagues found that D-2-HG inhibits different α-KG–dependent dioxygenases in vitro with a wide range of potencies (69), with histone H3K9 and H3K36 demethylase KDM4A/JMJD2A being the most sensitive (IC50 = 24 μmol/L), followed by H3K9/H3K36 demethylase KDM4C/JMJD2C (79 μmol/L), H3K36 demethylase KDM2A/FBXL11 (106 μmol/L), DNA repair enzyme ALKBH2 (424 μmol/L), FIH (1.5 mmol/L), prolyl hydroxylases (7.3 mmol/L), and γ-butyrobetaine dioxygenase BBOX-1 (13 mmol/L). This finding suggests that the KDM family of histone demethylases, which includes as many as 32 distinct enzymes in human cells and controls nearly all histone demethylation, is a major target of IDH1/2 mutation. This notion is supported by in vivo studies in both cultured cells and in human tumors. The levels of multiple histone methylations, including H3K4, H3K9, H3K27, and H3K79, were elevated in cells expressing tumor-derived IDH1/2 mutant or treated with cell-permeable 2-HG and in glioma with mutated IDH1 (42). More recent researches confirmed these findings and showed further that depletion of H3K9 demethylase KDM4C/JMJD2C blocked cell differentiation (70).

The second major target of IDH1/2 mutations is the TET family of DNA hydroxylases which catalyze 3 sequential oxidation reactions, converting 5-methlycytosine first to 5-hydroxymethylcytosine, then to 5-formylcytosine, and finally to 5-carboxylcytosine which can then be converted to unmethylated cytosine by thymine DNA glycosylase (12, 71–73). Three lines of genetic evidence support TET DNA hydroxylases as being pathologically relevant targets of IDH1/2 mutations. First, promoter DNA methylation profiling analysis has revealed that a subset of glioblastomas, known as the proneural subgroup (74), is enriched for IDH1 mutation and displays hypermethylation at a large number of loci (75) that is known as the glioma-CpG island methylator phenotype. These findings suggest a potential link between IDH1 mutation and increased DNA methylation. Second, inactivating mutations of the TET2 gene were found in about 22% of AML cases, notably occurring in a mutually exclusive manner with that of IDH1/2 genes in AML (43). Third, ectopic expression of IDH1R132H mutant in immortalized primary human astrocytes, a cell type from which glioblastoma is believed to develop, induce extensive DNA hypermethylation and reshaped the methylome in a fashion that mirrors the changes observed in IDH1-mutated low-grade gliomas (76), supporting the notion that IDH1 mutation alone is sufficient to cause the hypermethylation phenotype. Finally, direct biochemical evidence supporting TET as a target of IDH1/2 mutation is that D-2-HG inhibits TET activity in vitro and that the inhibition can be overcome by the addition of α-KG (42).

IDH1 and IDH2 mutations are good biomarkers

Four features make IDH1/2 mutations easily detectable, reliable, and specific biomarkers. First, IDH1 and IDH2 mutations occur in a highly restricted tumor spectrum and cell type. Second, nearly all tumor-derived mutations target IDH1 at a single residue, Arg132, and IDH2 at 2 residues, Arg140 and Arg172, which are located in a single exon 4 and can be simply identified through PCR-based amplification and sequencing using small amounts of tumor samples (e.g., 1 section of paraffin embedded tissue or a few cells). Third, antibodies specifically recognizing mutant IDH1R132H protein have been developed, making it possible to identify IDH1 mutation through conventional immunohistochemistry (77, 78). Fourth, MRS-based brain imaging technology, although still experimental and not yet ready for routine clinical application, has been developed that can noninvasively detect the accumulation of 2-HG in glioma patients (46–50).

In brain tumors, IDH1/2 mutations occur frequently (>75%) in grade 2 to 3 gliomas and secondary glioblastomas, but much less frequently in primary GBM and other brain tumors. As such, IDH1/2 mutations can be used to distinguish between primary and secondary GBM that are pathologically indistinguishable but clinically distinct entities with different prognoses. In addition, other reports suggest that IDH1/2 mutation can be used to distinguish oligodendroglioma from morphological mimics such as dysembryoplastic neuroepithelial tumors (79), infiltrative gliomas from nonneoplastic reactive gliosis (80, 81) or other noninfiltrative neoplasms like gangliogliomas (82), or pilocytic astrocytomas from other astrocytomas (83). However, it remains to be proven whether IDH1 mutation is a prognostic factor per se or a predictor of response to treatment. One study noted that IDH1 mutation is closely linked to prognosis in grade 2 to 4 gliomas (84); however, another recent study suggested that IDH mutation status may not have significant prognostic impact in grade 2 gliomas (85). In leukemia, IDH1/2 mutations were found frequently in cytogenetically normal adult AML, but not other subtypes of pediatric AML. Mutation of IDH2 alone, but not IDH1, is associated with a slightly favorable prognosis (86). Patients with cooccurring NPM1 and either IDH1 or IDH2 mutations have significantly better overall survival (37). Similarly, in intrahepatic cholangiocarcinoma, mutations in IDH1 or IDH2 gene were associated with longer overall survival and were independently associated with a longer span of time to tumor recurrence after resection (30). Efforts are currently underway to prospectively study the treatment responses in tumor patients with IDH1/2 mutations and provide further therapeutic insights.

Are mutant IDH1 and IDH2 good drug targets?

The question on whether mutant IDH1/2 is a good drug target can be more specifically framed as to whether IDH1/2-mutated tumors are addicted to 2-HG. A unique feature of IDH1/2 mutations is that mutants of IDH1/2 actively produce a new metabolite, 2-HG, that does not have an apparent physiologic function. Therefore, small molecules that selectively inhibit the 2-HG producing activity of mutant IDH1/2 would expect to have a marginally toxic effect toward normal cells. Given that multiple α-KG–dependent dioxygenases are inhibited by 2-HG in IDH1/2-mutated cells, a sudden withdrawal of 2-HG, if achieved, could conceivably cause a detrimental effect to the survival of IDH1/2-mutated cells. However, the direct evidence showing 2-HG addiction by the IDH1/2-mutated tumor cells has not been reported at present.

Several critical questions concerning the mechanisms and therapeutic targeting of IDH1/2-mutated tumors remain unanswered. First, what genetic alterations collaborate with IDH1/2 mutations in promoting tumorigenesis? Given its broad inhibitory activity toward multiple α-KG–dependent dioxygenases, the accumulation of 2-HG is expected to be toxic to the IDH1/2-mutated cells. In fact, ectopic expression of tumor-derived mutant IDH1 decreased the proliferation of D54 glioblastoma cells while overexpression of wild-type IDH1 stimulated D54 cell proliferation (38). One hypothesis explaining the tumorigenic activity of mutant IDH1/2 would be that there is an additional genetic alteration that offsets or alleviates the toxicity of 2-HG. In low-grade glioma and secondary GBM, p53 mutations cooccur early and frequently with IDH1 mutation (87, 88). Furthermore, recurrent losses of chromosomes 1p and 19q have long been observed to associate with the development of glioma, in particular oligodendroglioma (refs. 87, 89; Fig. 4). Two poorly characterized genes, human homolog of Drosophila capicua (CIC) located in chromosome 19q and far upstream element binding protein (FUBP1) located on chromosome 1p, have recently been identified as leading candidates for the 1p and 19q tumor suppressor genes which are mutated in an almost exclusive cooccurring manner with the IDH1/2 mutation (90–92). In AML, IDH1 and IDH2 genes are most frequently comutated with nucleophosmin NPM1 gene, followed by DNA (cytosine-5)-methyltransferase 3A (DNMT3A; refs. 37, 93, 94). Whether p53, CIC, FUBP1, NPM1, and DNMT3A mutations collaborate with IDH1/2 mutation remains to be determined.

Figure 4.

IDH1/2 mutations inhibit both histone and DNA demethylation and alter epigenetic regulation. Tumor-derived IDH1 and IDH2 mutations reduce α-KG and accumulate an α-KG antagonist, 2-HG, leading to the inhibition of both KDMs and the TET family of DNA hydroxylases. These inhibitions alter the epigenetic control of stem and progenitor cell differentiation.

Figure 4.

IDH1/2 mutations inhibit both histone and DNA demethylation and alter epigenetic regulation. Tumor-derived IDH1 and IDH2 mutations reduce α-KG and accumulate an α-KG antagonist, 2-HG, leading to the inhibition of both KDMs and the TET family of DNA hydroxylases. These inhibitions alter the epigenetic control of stem and progenitor cell differentiation.

Close modal

Second, what are the downstream target genes of IDH1/2 mutation? In AML, mutations targeting IDH1/2 and TET2 occur mutual exclusively (43), suggesting that, genetically, IDH1/2 and TET2 may function in the same, linear IDH-TET pathway. This hypothesis was supported by the finding that coexpression of wild-type and mutants of IDH1/2 resulted in the stimulation and inhibition of TET activity, respectively, in cultured cells and that 2-HG directly inhibited TET activity in vitro (42). The downstream targets of the IDH-TET pathway have not been identified. There are 2 competing hypotheses concerning the nature of the IDH-TET targets. One possibility is that a specific small set of genes, yet to be identified, are normally activated by TET-mediated DNA demethylation and control the fate of stem and progenitor cell differentiation. Inhibition of TET activity, by either mutation in a TET gene or the inhibition of TET activity in IDH1/2-mutated cells alters their expression and consequently restricts cellular differentiation. Alternatively, impairment of the IDH-TET pathway may not selectively impede the expression of a small group of genes to contribute tumorigenesis. Rather, DNA and histone methylation are altered widely in IDH1/2 and TET2 mutated cells that increases epigenetic plasticity analogously to the case of increased mutation rates and genomic plasticity in cells with impaired DNA repair pathways. Subsequent selection of cells that have acquired proliferative and survival advantages, in a context-dependent manner, would lead to clonal expansion and eventual tumorigenesis.

Third and urgently, mouse models for mutant IDH1/2, whether transgenic, xenograft or ultimately knock-in IDH1/2 mutant mice, are not only needed to obtain direct genetic evidence for the oncogenic activity of 2-HG, but more importantly for testing the effects of small molecule inhibitors of mutant IDH1/2. The challenges of generating the IDH1/2 mouse model likely reflect the strong toxicity of 2-HG produced by the tumor-derived mutant IDH1/2 that may severely block normal mouse development. This is also reflected in the fact that despite the establishments of many cell lines from glioma, AML, chondrosarcoma, and thyroid carcinomas, only one, HT1080 chondrosarcoma (reclassified by the Wellcome Trust Sanger Institute from previously fibrosarcoma), has been found to contain a mutation in IDH1 (R132C). Compounding the difficulty is the possibility that mutant IDH1/2 alone may not be sufficient to cause tumorigenesis and combination with a yet-to-be identified collaborating genetic mutation may be necessary. Recent isolation of a glioma stem cell line, BT142, containing heterozygous IDH1R132H mutation and establishment of a BT142 orthotopic xenograft mouse provide the first mouse model for investigating the oncogenic activity of 2-HG (95). More recently, haematopoietic and myeloid-specific conditional IDH1R132H-knock-in mice were generated (96), which, although not developing spontaneous tumors, are characterized with induction of a leukemic DNA methylation signature. The availability of these mouse models will advance our understanding of the mechanistic links between IDH1 mutations and tumorigenesis and develop therapeutics against IDH1/2-mutated tumors.

In conclusion, the discovery and subsequent investigation of IDH1/2 mutations in tumors have renewed interest into the research of tumor metabolism, identified a good biomarker for early detection and prognosis of several types of tumors, and led to the elucidation of the IDH-TET pathway in the epigenetic control of cell differentiation and tumor suppression. The extensive efforts that are currently underway should lead to a better understanding of the role of altered metabolic enzymes and metabolites in tumorigenesis, and novel strategies for therapeutic intervention in IDH1/2-mutated tumors.

No potential conflicts of interest were disclosed.

Conception and design: K.-L. Guan, Y. Xiong

Analysis and interpretation of data (e.g., statistical analysis, biostatistics, computational analysis): K.-L. Guan

Writing, review, and/or revision of the manuscript: H. Yang, D. Ye, K.-L. Guan, Y. Xiong

Administrative, technical, or material support (i.e., reporting or organizing data, constructing databases): Y. Xiong

Study supervision: K.-L. Guan, Y. Xiong

The authors thank previous and current members of the Fudan MCB laboratory for the discussion. The authors thank Eric Oermann for reading the manuscript.

This work was supported by MOST 973 (nos. 2012CB910300, 2012CB910101, 2011CB910600, and 2009CB918401) and NSFC (grant nos. 30600112, 30871255, 31071192, and 81120108016). This work was also supported by NIH grants to Y. Xiong (CA163834) and K.L. Guan (R01CA108941), and James McDonnell Foundation and Samuel Waxman Foundation (to Y. Xiong).

1.
Warburg
O
. 
On respiratory impairment in cancer cells
.
Science
1956
;
124
:
269
70
.
2.
Hsu
PP
,
Sabatini
DM
. 
Cancer cell metabolism: Warburg and beyond
.
Cell
2008
;
134
:
703
7
.
3.
Vander Heiden
MG
,
Cantley
LC
,
Thompson
CB
. 
Understanding the Warburg effect: the metabolic requirements of cell proliferation
.
Science
2009
;
324
:
1029
33
.
4.
Oermann
EK
,
Wu
J
,
Guan
KL
,
Xiong
Y
. 
Alterations of metabolic genes and metabolites in cancer
.
Semin Cell Dev Biol
2012
;
23
:
370
80
.
5.
Parsons
DW
,
Jones
S
,
Zhang
X
,
Lin
JC
,
Leary
RJ
,
Angenendt
P
, et al
An integrated genomic analysis of human glioblastoma multiforme
.
Science
2008
;
321
:
1807
12
.
6.
Balss
J
,
Meyer
J
,
Mueller
W
,
Korshunov
A
,
Hartmann
C
,
Deimling
A
. 
Analysis of the IDH1 codon 132 mutation in brain tumors
.
Acta Neuropathologica
2008
;
116
:
597
602
.
7.
Bleeker
FE
,
Lamba
S
,
Leenstra
S
,
Troost
D
,
Hulsebos
T
,
Vandertop
WP
, et al
IDH1 mutations at residue p.R132 (IDH1R132) occur frequently in high-grade gliomas but not in other solid tumors
.
Hum Mutat
2009
;
30
:
7
11
.
8.
Hartmann
C
,
Meyer
J
,
Balss
J
,
Capper
D
,
Mueller
W
,
Christians
A
, et al
Type and frequency of IDH1 and IDH2 mutations are related to astrocytic and oligodendroglial differentiation and age: a study of 1,010 diffuse gliomas
.
Acta Neuropathologica
2009
;
118
:
469
74
.
9.
Ichimura
K
,
Pearson
DM
,
Kocialkowski
S
,
Backlund
LM
,
Chan
R
,
Jones
DTW
, et al
IDH1 mutations are present in the majority of common adult gliomas but rare in primary glioblastomas
.
Neuro Oncol
2009
;
11
:
341
7
.
10.
Korshunov
A
,
Meyer
J
,
Capper
D
,
Christians
A
,
Remke
M
,
Witt
H
, et al
Combined molecular analysis of BRAF and IDH1 distinguishes pilocytic astrocytoma from diffuse astrocytoma
.
Acta Neuropathologica
2009
;
118
:
401
5
.
11.
Sanson
M
,
Marie
Y
,
Paris
S
,
Idbaih
A
,
Laffaire
J
,
Ducray
F
, et al
Isocitrate dehydrogenase 1 codon 132 mutation is an important prognostic biomarker in gliomas
.
J Clin Oncol
2009
;
27
:
4150
4
.
12.
Watanabe
T
,
Nobusawa
S
,
Kleihues
P
,
Ohgaki
H
. 
IDH1 mutations are early events in the development of astrocytomas and oligodendrogliomas
.
Am J Pathol
2009
;
174
:
1149
53
.
13.
Yan
H
,
Parsons
DW
,
Jin
G
,
McLendon
R
,
Rasheed
BA
,
Yuan
W
, et al
IDH1 and IDH2 mutations in gliomas
.
N Engl J Med
2009
;
360
:
765
73
.
14.
Dang
L
,
Jin
S
,
Su
SM
. 
IDH mutations in glioma and acute myeloid leukemia
.
Trends Mol Med
2010
;
16
:
387
97
.
15.
Gravendeel
LAM
,
Kloosterhof
NK
,
Bralten
LBC
,
van Marion
R
,
Dubbink
HJ
,
Dinjens
W
, et al
Segregation of non-p.R132H mutations inIDH1 in distinct molecular subtypes of glioma
.
Hum Mutat
2010
;
31
:
E1186
99
.
16.
Mardis
ER
,
Ding
L
,
Dooling
DJ
,
Larson
DE
,
McLellan
MD
,
Chen
K
, et al
Recurring mutations found by sequencing an acute myeloid leukemia genome
.
N Engl J Med
2009
;
361
:
1058
66
.
17.
Marcucci
G
,
Haferlach
T
,
Dohner
H
. 
Molecular genetics of adult acute myeloid leukemia: prognostic and therapeutic implications
.
J Clin Oncol
2011
;
29
:
475
86
.
18.
Chou
WC
,
Hou
HA
,
Chen
CY
,
Tang
JL
,
Yao
M
,
Tsay
W
, et al
Distinct clinical and biologic characteristics in adult acute myeloid leukemia bearing the isocitrate dehydrogenase 1 mutation
.
Blood
2010
;
115
:
2749
54
.
19.
Gross
S
,
Cairns
RA
,
Minden
MD
,
Driggers
EM
,
Bittinger
MA
,
Jang
HG
, et al
Cancer-associated metabolite 2-hydroxyglutarate accumulates in acute myelogenous leukemia with isocitrate dehydrogenase 1 and 2 mutations
.
J Exp Med
2010
;
207
:
339
44
.
20.
Ho
PA
,
Alonzo
TA
,
Kopecky
KJ
,
Miller
KL
,
Kuhn
J
,
Zeng
R
, et al
Molecular alterations of the IDH1 gene in AML: a Children's Oncology Group and Southwest Oncology Group study
.
Leukemia
2010
;
24
:
909
13
.
21.
Marcucci
G
,
Maharry
K
,
Wu
YZ
,
Radmacher
MD
,
Mrozek
K
,
Margeson
D
, et al
IDH1 and IDH2 gene mutations identify novel molecular subsets within de novo cytogenetically normal acute myeloid leukemia: a cancer and leukemia group B study
.
J Clin Oncol
2010
;
28
:
2348
55
.
22.
Tefferi
A
,
Lasho
TL
,
Abdel-Wahab
O
,
Guglielmelli
P
,
Patel
J
,
Caramazza
D
, et al
IDH1 and IDH2 mutation studies in 1473 patients with chronic-, fibrotic- or blast-phase essential thrombocythemia, polycythemia vera or myelofibrosis
.
Leukemia
2010
;
24
:
1302
9
.
23.
Wagner
K
,
Damm
F
,
Gohring
G
,
Gorlich
K
,
Heuser
M
,
Schafer
I
, et al
Impact of IDH1 R132 mutations and an IDH1 single nucleotide polymorphism in cytogenetically normal acute myeloid leukemia: SNP rs11554137 is an adverse prognostic factor
.
J Clin Oncol
2010
;
28
:
2356
64
.
24.
Ward
PS
,
Patel
J
,
Wise
DR
,
Abdel-Wahab
O
,
Bennett
BD
,
Coller
HA
, et al
The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting α-ketoglutarate to 2-hydroxyglutarate
.
Cancer Cell
2010
;
17
:
225
34
.
25.
Hemerly
JP
,
Bastos
AU
,
Cerutti
JM
. 
Identification of several novel non-p.R132 IDH1 variants in thyroid carcinomas
.
Eur J Endocrinol
2010
;
163
:
747
55
.
26.
Murugan
AK
,
Bojdani
E
,
Xing
M
. 
Identification and functional characterization of isocitrate dehydrogenase 1 (IDH1) mutations in thyroid cancer
.
Biochem Biophys Res Commun
2010
;
393
:
555
9
.
27.
Amary
MF
,
Bacsi
K
,
Maggiani
F
,
Damato
S
,
Halai
D
,
Berisha
F
, et al
IDH1 and IDH2 mutations are frequent events in central chondrosarcoma and central and periosteal chondromas but not in other mesenchymal tumours
.
J Pathol
2011
;
224
:
334
43
.
28.
Amary
MF
,
Damato
S
,
Halai
D
,
Eskandarpour
M
,
Berisha
F
,
Bonar
F
, et al
Ollier disease and Maffucci syndrome are caused by somatic mosaic mutations of IDH1 and IDH2
.
Nat Genet
2011
;
43
:
1262
5
.
29.
Pansuriya
TC
,
van Eijk
R
,
d'Adamo
P
,
van Ruler
MAJH
,
Kuijjer
ML
,
Oosting
J
, et al
Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome
.
Nat Genet
2011
;
43
:
1256
61
.
30.
Wang
P
,
Dong
QZ
,
Zhang
C
,
Kuan
PF
,
Liu
YF
,
Jeck
WR
, et al
Mutations in isocitrate dehydrogenase 1 and 2 are associated with DNA hypermethylation in intrahepatic cholangiocarcinomas
.
Oncogene
. 
2012 Jul 23
.
[Epub ahead of print]
.
31.
Borger
DR
,
Tanabe
KK
,
Fan
KC
,
Lopez
HU
,
Fantin
VR
,
Straley
KS
, et al
Frequent mutation of isocitrate dehydrogenase (IDH) 1 and IDH2 in cholangiocarcinoma identified through broad-based tumor genotyping
.
Oncologist
2012
;
17
:
72
9
.
32.
Kang
MR
,
Kim
MS
,
Oh
JE
,
Kim
YR
,
Song
SY
,
Seo
SI
, et al
Mutational analysis of IDH1 codon 132 in glioblastomas and other common cancers
.
Int J Cancer
2009
;
125
:
353
5
.
33.
Gaal
J
,
Burnichon
N
,
Korpershoek
E
,
Roncelin
I
,
Bertherat
J
,
Plouin
PF
, et al
Isocitrate dehydrogenase mutations are rare in pheochromocytomas and paragangliomas
.
J Clin Endocrinol Metab
2010
;
95
:
1274
8
.
34.
Lopez
GY
,
Reitman
ZJ
,
Solomon
D
,
Waldman
T
,
Bigner
DD
,
McLendon
RE
, et al
IDH1R132 mutation identified in one human melanoma metastasis, but not correlated with metastases to the brain
.
Biochem Biophys Res Commun
2010
;
398
:
585
7
.
35.
Kranendijk
M
,
Struys
EA
,
Van Schaftingen
E
,
Gibson
KM
,
Kanhai
WA
,
Van Der Knaap
MS
, et al
IDH2 mutations in patients with D-2-hydroxyglutaric aciduria
.
Science
2010
;
330
:
336
-.
36.
Pusch
S
,
Sahm
F
,
Meyer
J
,
Mittelbronn
M
,
Hartmann
C
,
Von Deimling
A
. 
Glioma IDH1 mutation patterns off the beaten track
.
Neuropathol Appl Neurobiol
2011
;
37
:
428
30
.
37.
Patel
JP
,
Gonen
M
,
Figueroa
ME
,
Fernandez
H
,
Sun
Z
,
Racevskis
J
, et al
Prognostic relevance of integrated genetic profiling in acute myeloid leukemia
.
N Engl J Med
2012
;
366
:
1079
89
.
38.
Seltzer
MJ
,
Bennett
BD
,
Joshi
AD
,
Gao
P
,
Thomas
AG
,
Ferraris
DV
, et al
Inhibition of glutaminase preferentially slows growth of glioma cells with mutant IDH1
.
Cancer Res
2010
;
70
:
8981
7
.
39.
Bralten
LBC
,
Kloosterhof
NK
,
Balvers
R
,
Sacchetti
A
,
Lapre
L
,
Lamfers
M
, et al
IDH1 R132H decreases proliferation of glioma cell lines in vitro and in vivo
.
Ann Neurol
2011
;
69
:
455
63
.
40.
Zhao
S
,
Lin
Y
,
Xu
W
,
Jiang
W
,
Zha
Z
,
Wang
P
, et al
Glioma-derived mutations in IDH1 dominantly inhibit IDH1 catalytic activity and induce HIF-1 {alpha}
.
Science
2009
;
324
:
261
.
41.
Dang
L
,
White
DW
,
Gross
S
,
Bennett
BD
,
Bittinger
MA
,
Driggers
EM
, et al
Cancer-associated IDH1 mutations produce 2-hydroxyglutarate
.
Nature
2009
;
462
:
739
44
.
42.
Xu
W
,
Yang
H
,
Liu
Y
,
Yang
Y
,
Wang
P
,
Kim
SH
, et al
Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of alpha-ketoglutarate-dependent dioxygenases
.
Cancer Cell
2011
;
19
:
17
30
.
43.
Figueroa
ME
,
Abdel-Wahab
O
,
Lu
C
,
Ward
PS
,
Patel
J
,
Shih
A
, et al
Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
.
Cancer Cell
2010
;
18
:
553
67
.
44.
Ward
PS
,
Cross
JR
,
Lu
C
,
Weigert
O
,
Abel-Wahab
O
,
Levine
RL
, et al
Identification of additional IDH mutations associated with oncometabolite R(-)-2-hydroxyglutarate production
.
Oncogene
2012
;
31
:
2491
8
.
45.
Amary
MF
,
Damato
S
,
Halai
D
,
Eskandarpour
M
,
Berisha
F
,
Bonar
F
, et al
Ollier disease and Maffucci syndrome are caused by somatic mosaic mutations of IDH1 and IDH2
.
Nat Genet
2011
;
43
:
1262
5
.
46.
Elkhaled
A
,
Jalbert
LE
,
Phillips
JJ
,
Yoshihara
HA
,
Parvataneni
R
,
Srinivasan
R
, et al
Magnetic resonance of 2-hydroxyglutarate in IDH1-mutated low-grade gliomas
.
Sci Transl Med
2012
;
4
:
116ra5
.
47.
Pope
WB
,
Prins
RM
,
Albert Thomas
M
,
Nagarajan
R
,
Yen
KE
,
Bittinger
MA
, et al
Non-invasive detection of 2-hydroxyglutarate and other metabolites in IDH1 mutant glioma patients using magnetic resonance spectroscopy
.
J Neurooncol
2012
;
107
:
197
205
.
48.
Kalinina
J
,
Carroll
A
,
Wang
L
,
Yu
Q
,
Mancheno
DE
,
Wu
S
, et al
Detection of “oncometabolite” 2-hydroxyglutarate by magnetic resonance analysis as a biomarker of IDH1/2 mutations in glioma
.
J Mol Med (Berl)
2012
;
90
:
1161
71
.
49.
Choi
C
,
Ganji
SK
,
DeBerardinis
RJ
,
Hatanpaa
KJ
,
Rakheja
D
,
Kovacs
Z
, et al
2-hydroxyglutarate detection by magnetic resonance spectroscopy in IDH-mutated patients with gliomas
.
Nat Med
2012
;
18
:
624
9
.
50.
Andronesi
OC
,
Kim
GS
,
Gerstner
E
,
Batchelor
T
,
Tzika
AA
,
Fantin
VR
, et al
Detection of 2-hydroxyglutarate in IDH-mutated glioma patients by in vivo spectral-editing and 2D correlation magnetic resonance spectroscopy
.
Sci Transl Med
2012
;
4
:
116ra4
.
51.
Achouri
Y
,
NOëL
G
,
Vertommen
D
,
Rider
MH
,
Veiga-Da-Cunha
M
,
Van Schaftingen
E
. 
Identification of a dehydrogenase acting on D-2-hydroxyglutarate
.
Biochem J
2004
;
381
:
35
.
52.
Topçu
M
,
Jobard
F
,
Halliez
S
,
Coskun
T
,
Yalçinkayal
C
,
Gerceker
FO
, et al
L-2-Hydroxyglutaric aciduria: identification of a mutant gene C14orf160, localized on chromosome 14q22. 1
.
Hum Mol Genet
2004
;
13
:
2803
11
.
53.
Struys
E
,
Verhoeven
N
,
Ten Brink
H
,
Wickenhagen
W
,
Gibson
K
,
Jakobs
C
. 
Kinetic characterization of human hydroxyacid–oxoacid transhydrogenase: Relevance to
.
J Inherit Metab Dis
2005
;
28
:
921
30
.
54.
Rzem
R
,
Vincent
MF
,
Van Schaftingen
E
,
Veiga-da-Cunha
M
. 
L-2-hydroxyglutaric aciduria, a defect of metabolite repair
.
J Inherit Metab Dis
2007
;
30
:
681
9
.
55.
Chalmers
R
,
Lawson
A
,
Watts
RWE
,
Tavill
A
,
Kamerling
J
,
Hey
E
, et al
D-2-Hydroxyglutaric aciduria: case report and biochemical studies
.
J Inherit Metab Dis
1980
;
3
:
11
5
.
56.
Duran
M
,
Kamerling
J
,
Bakker
H
,
Van Gennip
A
,
Wadman
S
. 
L-2-Hydroxyglutaric aciduria: an inborn error of metabolism?
J Inherit Metab Dis
1980
;
3
:
109
12
.
57.
Kranendijk
M
,
Struys
EA
,
Salomons
GS
,
Van der Knaap
MS
,
Jakobs
C
. 
Progress in understanding 2-hydroxyglutaric acidurias
.
J Inherit Metab Dis
2012
:
1
17
.
58.
Atai
NA
,
Renkema-Mills
NA
,
Bosman
J
,
Schmidt
N
,
Rijkeboer
D
,
Tigchelaar
W
, et al
Differential activity of NADPH-producing dehydrogenases renders rodents unsuitable models to study IDH1R132 mutation effects in human glioblastoma
.
J Histochem Cytochem
2011
;
59
:
489
.
59.
Jin
G
,
Reitman
ZJ
,
Spasojevic
I
,
Batinic-Haberle
I
,
Yang
J
,
Schmidt-Kittler
O
, et al
2-hydroxyglutarate production, but not dominant negative function, is conferred by glioma-derived NADP+-dependent isocitrate dehydrogenase mutations
.
PLoS ONE
2011
;
6
:
e16812
.
60.
Metallo
CM
,
Gameiro
PA
,
Bell
EL
,
Mattaini
KR
,
Yang
J
,
Hiller
K
, et al
Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia
.
Nature
2012
;
481
:
380
4
.
61.
Mullen
AR
,
Wheaton
WW
,
Jin
ES
,
Chen
PH
,
Sullivan
LB
,
Cheng
T
, et al
Reductive carboxylation supports growth in tumour cells with defective mitochondria
.
Nature
2012
;
481
:
385
8
.
62.
Wise
DR
,
Ward
PS
,
Shay
JES
,
Cross
JR
,
Gruber
JJ
,
Sachdeva
UM
, et al
Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability
.
Proc Natl Acad Sci
2011
;
108
:
19611
6
.
63.
Mussini
E
,
Hutton
JJ
 Jr
,
Udenfriend
S
. 
Collagen proline hydroxylase in wound healing, granuloma formation, scurvy, and growth
.
Science
1967
;
157
:
927
9
.
64.
Iyer
LM
,
Tahiliani
M
,
Rao
A
,
Aravind
L
. 
Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids
.
Cell Cycle
2009
;
8
:
1698
710
.
65.
Hausinger
RP
. 
FeII/alpha-ketoglutarate-dependent hydroxylases and related enzymes
.
Crit Rev Biochem Mol Biol
2004
;
39
:
21
68
.
66.
Loenarz
C
,
Schofield
CJ
. 
Expanding chemical biology of 2-oxoglutarate oxygenases
.
Nat Chem Biol
2008
;
4
:
152
6
.
67.
Rose
NR
,
McDonough
MA
,
King
ON
,
Kawamura
A
,
Schofield
CJ
. 
Inhibition of 2-oxoglutarate dependent oxygenases
.
Chem Soc Rev
2011
;
40
:
4364
97
.
68.
Clifton
IJ
,
McDonough
MA
,
Ehrismann
D
,
Kershaw
NJ
,
Granatino
N
,
Schofield
CJ
. 
Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins
.
J Inorg Biochem
2006
;
100
:
644
69
.
69.
Chowdhury
R
,
Yeoh
KK
,
Tian
YM
,
Hillringhaus
L
,
Bagg
EA
,
Rose
NR
, et al
The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases
.
EMBO Rep
2011
;
12
:
463
9
.
70.
Lu
C
,
Ward
PS
,
Kapoor
GS
,
Rohle
D
,
Turcan
S
,
Abdel-Wahab
O
, et al
IDH mutation impairs histone demethylation and results in a block to cell differentiation
.
Nature
2012
;
483
:
474
8
.
71.
Yan
H
,
Bigner
DD
,
Velculescu
V
,
Parsons
DW
. 
Mutant metabolic enzymes are at the origin of gliomas
.
Cancer Res
2009
;
69
:
9157
9
.
72.
Kriaucionis
S
,
Heintz
N
. 
The nuclear DNA base 5-hydroxymethylcytosine is present in purkinje neurons and the brain
.
Science
2009
;
324
:
929
30
.
73.
Tahiliani
M
,
Koh
KP
,
Shen
Y
,
Pastor
WA
,
Bandukwala
H
,
Brudno
Y
, et al
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
.
Science
2009
;
324
:
930
5
.
74.
Verhaak
RG
,
Hoadley
KA
,
Purdom
E
,
Wang
V
,
Qi
Y
,
Wilkerson
MD
, et al
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
.
Cancer Cell
2010
;
17
:
98
110
.
75.
Noushmehr
H
,
Weisenberger
DJ
,
Diefes
K
,
Phillips
HS
,
Pujara
K
,
Berman
BP
, et al
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
.
Cancer Cell
2010
;
17
:
510
22
.
76.
Turcan
S
,
Rohle
D
,
Goenka
A
,
Walsh
LA
,
Fang
F
,
Yilmaz
E
, et al
IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype
.
Nature
2012
;
483
:
479
83
.
77.
Capper
D
,
Weißert
S
,
Balss
J
,
Habel
A
,
Meyer
J
,
Jäger
D
, et al
Characterization of R132H Mutation-specific IDH1 Antibody Binding in Brain Tumors
.
Brain Pathol
2010
;
20
:
245
54
.
78.
Capper
D
,
Zentgraf
H
,
Balss
J
,
Hartmann
C
,
von Deimling
A
. 
Monoclonal antibody specific for IDH1 R132H mutation
.
Acta Neuropathol
2009
;
118
:
599
601
.
79.
Capper
D
,
Reuss
D
,
Schittenhelm
J
,
Hartmann
C
,
Bremer
J
,
Sahm
F
, et al
Mutation-specific IDH1 antibody differentiates oligodendrogliomas and oligoastrocytomas from other brain tumors with oligodendroglioma-like morphology
.
Acta Neuropathol
2011
;
121
:
241
52
.
80.
Horbinski
C
,
Kofler
J
,
Kelly
LM
,
Murdoch
GH
,
Nikiforova
MN
. 
Diagnostic use of IDH1/2 mutation analysis in routine clinical testing of formalin-fixed, paraffin-embedded glioma tissues
.
J Neuropathol Exp Neurol
2009
;
68
:
1319
.
81.
Capper
D
,
Sahm
F
,
Hartmann
C
,
Meyermann
R
,
von Deimling
A
,
Schittenhelm
J
. 
Application of mutant IDH1 antibody to differentiate diffuse glioma from nonneoplastic central nervous system lesions and therapy-induced changes
.
Am J Surg Pathol
2010
;
34
:
1199
.
82.
Horbinski
C
,
Kofler
J
,
Yeaney
G
,
Camelo-Piragua
S
,
Venneti
S
,
Louis
DN
, et al
Isocitrate dehydrogenase 1 analysis differentiates gangliogliomas from infiltrative gliomas
.
Brain Pathol
2011
;
21
:
564
74
.
83.
Camelo-Piragua
S
,
Jansen
M
,
Ganguly
A
,
Kim
JCM
,
Cosper
AK
,
Dias-Santagata
D
, et al
A sensitive and specific diagnostic panel to distinguish diffuse astrocytoma from astrocytosis: chromosome 7 gain with mutant isocitrate dehydrogenase 1 and p53
.
J Neuropathol Exp Neurol
2011
;
70
:
110
.
84.
Sanson
M
,
Marie
Y
,
Paris
S
,
Idbaih
A
,
Laffaire
J
,
Ducray
F
, et al
Isocitrate Dehydrogenase 1 Codon 132 Mutation Is an Important Prognostic Biomarker in Gliomas
.
J Clin Oncol
2009
;
27
:
4150
4
.
85.
Thon
N
,
Eigenbrod
S
,
Kreth
S
,
Lutz
J
,
Tonn
JC
,
Kretzschmar
H
, et al
IDH1 mutations in grade II astrocytomas are associated with unfavorable progression-free survival and prolonged postrecurrence survival
.
Cancer
2012
;
118
:
452
60
.
86.
Chou
WC
,
Lei
WC
,
Ko
BS
,
Hou
HA
,
Chen
CY
,
Tang
JL
, et al
The prognostic impact and stability of Isocitrate dehydrogenase 2 mutation in adult patients with acute myeloid leukemia
.
Leukemia
2011
;
25
:
246
53
.
87.
Dunn
GP
,
Rinne
ML
,
Wykosky
J
,
Genovese
G
,
Quayle
SN
,
Dunn
IF
, et al
Emerging insights into the molecular and cellular basis of glioblastoma
.
Genes Dev
2012
;
26
:
756
84
.
88.
Watanabe
T
,
Nobusawa
S
,
Kleihues
P
,
Ohgaki
H
. 
IDH1 mutations are early events in the development of astrocytomas and oligodendrogliomas
.
Am J Pathol
2009
;
174
:
1149
53
.
89.
Labussiere
M
,
Idbaih
A
,
Wang
XW
,
Marie
Y
,
Boisselier
B
,
Falet
C
, et al
All the 1p19q codeleted gliomas are mutated on IDH1 or IDH2
.
Neurology
2010
;
74
:
1886
90
.
90.
Sahm
F
,
Koelsche
C
,
Meyer
J
,
Pusch
S
,
Lindenberg
K
,
Mueller
W
, et al
CIC and FUBP1 mutations in oligodendrogliomas, oligoastrocytomas and astrocytomas
.
Acta Neuropathol
2012
;
123
:
853
60
.
91.
Bettegowda
C
,
Agrawal
N
,
Jiao
Y
,
Sausen
M
,
Wood
LD
,
Hruban
RH
, et al
Mutations in CIC and FUBP1 contribute to human oligodendroglioma
.
Science
2011
;
333
:
1453
5
.
92.
Yip
S
,
Butterfield
YS
,
Morozova
O
,
Chittaranjan
S
,
Blough
MD
,
An
J
, et al
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers
.
J Pathol
2012
;
226
:
7
16
.
93.
Abbas
S
,
Lugthart
S
,
Kavelaars
FG
,
Schelen
A
,
Koenders
JE
,
Zeilemaker
A
, et al
Acquired mutations in the genes encoding IDH1 and IDH2 both are recurrent aberrations in acute myeloid leukemia: prevalence and prognostic value
.
Blood
2010
;
116
:
2122
6
.
94.
Shen
Y
,
Zhu
YM
,
Fan
X
,
Shi
JY
,
Wang
QR
,
Yan
XJ
, et al
Gene mutation patterns and their prognostic impact in a cohort of 1185 patients with acute myeloid leukemia
.
Blood
2011
;
118
:
5593
603
.
95.
Luchman
HA
,
Stechishin
OD
,
Dang
NH
,
Blough
MD
,
Chesnelong
C
,
Kelly
JJ
, et al
An in vivo patient-derived model of endogenous IDH1-mutant glioma
.
Neuro Oncol
2012
;
14
:
184
91
.
96.
Sasaki
M
,
Knobbe
CB
,
Munger
JC
,
Lind
EF
,
Brenner
D
,
Brüstle
A
, et al
IDH1(R132H) mutation increases murine haematopoietic progenitors and alters epigenetics
.
Nature
2012
;
488
:
656
9
.