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Emily Vogtmann
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Journal Articles

Sample Size Estimations Based on Human Microbiome Temporal Stability Over 6 Months: A Shallow Shotgun Metagenome Sequencing Analysis

Semi Zouiouich, Yunhu Wan, Emily Vogtmann, Carolina Porras, Christian C. Abnet, Jianxin Shi, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2025) 34 (4): 588–597.
https://doi.org/10.1158/1055-9965.EPI-24-0839
Published: 03 April 2025
View articletitled, Sample Size Estimations Based on Human Microbiome Temporal Stability Over 6 Months: A Shallow Shotgun Metagenome Sequencing Analysis
Open the PDF for Sample Size Estimations Based on Human Microbiome Temporal Stability Over 6 Months: A Shallow Shotgun Metagenome Sequencing Analysis in another window
Includes: Supplementary data
Journal Articles

Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods

Semi Zouiouich, Doratha A. Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C. Humphrey, Gail L. Ackermann, Rob Knight, Christian C. Abnet, Emily Vogtmann, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2023) 32 (3): 444–451.
https://doi.org/10.1158/1055-9965.EPI-22-0883
Published: 06 March 2023
View articletitled, Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
Open the PDF for Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods in another window
Includes: Supplementary data
Journal Articles

Prospective and Cross-sectional Associations of the Rectal Tissue Microbiome with Colorectal Adenoma Recurrence

Doratha A. Byrd, Emily Vogtmann, Ana M. Ortega-Villa, Yunhu Wan, Maria Gomez, Stephanie Hogue, Andrew Warner, Bin Zhu, Casey Dagnall, Kristine Jones, Belynda Hicks, Paul S. Albert, Gwen Murphy, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2023) 32 (3): 435–443.
https://doi.org/10.1158/1055-9965.EPI-22-0608
Published: 06 March 2023
View articletitled, Prospective and Cross-sectional Associations of the Rectal Tissue Microbiome with Colorectal Adenoma Recurrence
Open the PDF for Prospective and Cross-sectional Associations of the Rectal Tissue Microbiome with Colorectal Adenoma Recurrence in another window
Includes: Supplementary data
Journal Articles

Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs

Semi Zouiouich, Mahendra Mariadassou, Olivier Rué, Emily Vogtmann, Inge Huybrechts, Gianluca Severi, Marie-Christine Boutron-Ruault, Carlo Senore, Alessio Naccarati, Giulio Mengozzi, Zisis Kozlakidis, Mazda Jenab, Rashmi Sinha, Marc J. Gunter, Marion Leclerc
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2022) 31 (2): 305–314.
https://doi.org/10.1158/1055-9965.EPI-21-0188
Published: 07 February 2022
View articletitled, Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs
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Includes: Supplementary data
Journal Articles

Reproducibility, Temporal Variability, and Concordance of Serum and Fecal Bile Acids and Short Chain Fatty Acids in a Population-Based Study

Zeinab Farhat, Joshua N. Sampson, Allan Hildesheim, Mahboobeh Safaeian, Carolina Porras, Bernal Cortés, Rolando Herrero, Byron Romero, Emily Vogtmann, Rashmi Sinha, Erikka Loftfield
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2021) 30 (10): 1875–1883.
https://doi.org/10.1158/1055-9965.EPI-21-0361
Published: 01 October 2021
View articletitled, Reproducibility, Temporal Variability, and Concordance of Serum and Fecal Bile Acids and Short Chain Fatty Acids in a Population-Based Study
Open the PDF for Reproducibility, Temporal Variability, and Concordance of Serum and Fecal Bile Acids and Short Chain Fatty Acids in a Population-Based Study in another window
Includes: Supplementary data
Journal Articles

Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort

Erikka Loftfield, Karl-Heinz Herzig, J. Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A. Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J. Gunter, Marjo-Riitta Järvelin, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2020) 29 (11): 2289–2299.
https://doi.org/10.1158/1055-9965.EPI-20-0824
Published: 02 November 2020
View articletitled, Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort
Open the PDF for Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort in another window
Includes: Supplementary data
Journal Articles

The Human Microbiome in Relation to Cancer Risk: A Systematic Review of Epidemiologic Studies

Inge Huybrechts, Semi Zouiouich, Astrid Loobuyck, Zeger Vandenbulcke, Emily Vogtmann, Silvia Pisanu, Isabel Iguacel, Augustin Scalbert, Iciar Indave, Vitaly Smelov, Marc J. Gunter, Nathalie Michels
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2020) 29 (10): 1856–1868.
https://doi.org/10.1158/1055-9965.EPI-20-0288
Published: 01 October 2020
View articletitled, The Human Microbiome in Relation to Cancer Risk: A Systematic Review of Epidemiologic Studies
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Includes: Supplementary data
Journal Articles

A Comparison of Biopsy and Mucosal Swab Specimens for Examining the Microbiota of Upper Gastrointestinal Carcinoma

An-Qi Liu, Emily Vogtmann, Dan-Tong Shao, Christian C. Abnet, Hao-Yu Dou, Yu Qin, Zheng Su, Wen-Qiang Wei, Wen Chen
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2019) 28 (12): 2030–2037.
https://doi.org/10.1158/1055-9965.EPI-18-1210
Published: 02 December 2019
View articletitled, A Comparison of Biopsy and Mucosal Swab Specimens for Examining the Microbiota of Upper Gastrointestinal Carcinoma
Open the PDF for A Comparison of Biopsy and Mucosal Swab Specimens for Examining the Microbiota of Upper Gastrointestinal Carcinoma in another window
Includes: Supplementary data
Journal Articles

Comparison of Oral Collection Methods for Studies of Microbiota

Emily Vogtmann, Jun Chen, Muhammad G. Kibriya, Amnon Amir, Jianxin Shi, Yu Chen, Tariqul Islam, Mahbubul Eunes, Alauddin Ahmed, Jabun Naher, Anisur Rahman, Bhaswati Barmon, Rob Knight, Nicholas Chia, Habibul Ahsan, Christian C. Abnet, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2019) 28 (1): 137–143.
https://doi.org/10.1158/1055-9965.EPI-18-0312
Published: 07 January 2019
View articletitled, Comparison of Oral Collection Methods for Studies of Microbiota
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Includes: Supplementary data
Journal Articles

Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies

Emily Vogtmann, Xing Hua, Liang Zhou, Yunhu Wan, Shalabh Suman, Bin Zhu, Casey L. Dagnall, Amy Hutchinson, Kristine Jones, Belynda D. Hicks, Rashmi Sinha, Jianxin Shi, Christian C. Abnet
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2018) 27 (5): 594–600.
https://doi.org/10.1158/1055-9965.EPI-17-1004
Published: 30 April 2018
View articletitled, Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies
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Includes: Supplementary data
Journal Articles

Tobacco Product Use Patterns, and Nicotine and Tobacco-Specific Nitrosamine Exposure: NHANES 1999–2012

Kelvin Choi, Melanie Sabado, Sherine El-Toukhy, Emily Vogtmann, Neal D. Freedman, Dorothy Hatsukami
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2017) 26 (10): 1525–1530.
https://doi.org/10.1158/1055-9965.EPI-17-0338
Published: 01 October 2017
View articletitled, Tobacco Product Use Patterns, and Nicotine and Tobacco-Specific Nitrosamine Exposure: NHANES 1999–2012
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Journal Articles

Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies

Erikka Loftfield, Emily Vogtmann, Joshua N. Sampson, Steven C. Moore, Heidi Nelson, Rob Knight, Nicholas Chia, Rashmi Sinha
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2016) 25 (11): 1483–1490.
https://doi.org/10.1158/1055-9965.EPI-16-0409
Published: 31 October 2016
View articletitled, Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies
Open the PDF for Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies in another window
Includes: Supplementary data
Journal Articles

Fecal Microbiome in Epidemiologic Studies—Response

Rashmi Sinha, Emily Vogtmann, Jun Chen, Amnon Amir, Jianxin Shi, Joshua Sampson, Roberto Flores, Rob Knight, Nicholas Chia
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2016) 25 (5): 870–871.
https://doi.org/10.1158/1055-9965.EPI-16-0161
Published: 01 May 2016
View articletitled, Fecal Microbiome in Epidemiologic Studies—Response
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Journal Articles

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies

Rashmi Sinha, Jun Chen, Amnon Amir, Emily Vogtmann, Jianxin Shi, Kristin S. Inman, Roberto Flores, Joshua Sampson, Rob Knight, Nicholas Chia
Journal: Cancer Epidemiology, Biomarkers & Prevention
Cancer Epidemiol Biomarkers Prev (2016) 25 (2): 407–416.
https://doi.org/10.1158/1055-9965.EPI-15-0951
Published: 04 February 2016
View articletitled, Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
Open the PDF for Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies in another window
Includes: Supplementary data