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Journal Articles

Multi-omics Analysis of a Fecal Microbiota Transplantation Trial Identifies Novel Aspects of Acute GVHD Pathogenesis

Armin Rashidi, Maryam Ebadi, Tauseef U. Rehman, Heba Elhusseini, David Kazadi, Hossam Halaweish, Mohammad H. Khan, Andrea Hoeschen, Qing Cao, Xianghua Luo, Amanda J. Kabage, Sharon Lopez, Sivapriya Ramamoorthy, Shernan G. Holtan, Daniel J. Weisdorf, Alexander Khoruts, Christopher Staley
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (6): 1454–1466.
https://doi.org/10.1158/2767-9764.CRC-24-0138
Published: 10 June 2024
View article titled, Multi-omics Analysis of a Fecal Microbiota Transplantation Trial Identifies Novel Aspects of Acute GVHD Pathogenesis
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Includes: Supplementary data
Journal Articles

Molecular Landscape and Clinical Implication of CCNE1-amplified Esophagogastric Cancer

Naryan Rustgi, Sharon Wu, Timothy Samec, Phillip Walker, Joanne Xiu, Emil Lou, Sanjay Goel, Anwaar Saeed, Ryan H. Moy
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (6): 1399–1409.
https://doi.org/10.1158/2767-9764.CRC-23-0496
Published: 03 June 2024
View article titled, Molecular Landscape and Clinical Implication of <em>CCNE1-</em>amplified Esophagogastric Cancer
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Includes: Supplementary data
Journal Articles

Pan-Cancer Interrogation of B7-H3 (CD276) as an Actionable Therapeutic Target Across Human Malignancies

Carly D. Miller, John R. Lozada, Nicholas A. Zorko, Andrew Elliott, Allison Makovec, Milan Radovich, Elisabeth I. Heath, Neeraj Agarwal, Rana R. Mckay, Rohan Garje, Bruno R. Bastos, Dave S.B. Hoon, Jacob J. Orme, Oliver Sartor, Ari VanderWalde, Chadi Nabhan, George Sledge, Eugene Shenderov, Scott M. Dehm, Emil Lou, Jeffrey S. Miller, Justin H. Hwang, Emmanuel S. Antonarakis
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (5): 1369–1379.
https://doi.org/10.1158/2767-9764.CRC-23-0546
Published: 30 May 2024
View article titled, Pan-Cancer Interrogation of B7-H3 (<em>CD276</em>) as an Actionable Therapeutic Target Across Human Malignancies
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Includes: Supplementary data
Journal Articles

Modeling Myeloma Dissemination In Vitro with hMSC-interacting Subpopulations of INA-6 Cells and Their Aggregation/Detachment Dynamics

Martin Kuric, Susanne Beck, Doris Schneider, Wyonna Rindt, Marietheres Evers, Jutta Meißner-Weigl, Sabine Zeck, Melanie Krug, Marietta Herrmann, Tanja Nicole Hartmann, Ellen Leich, Maximilian Rudert, Denitsa Docheva, Anja Seckinger, Dirk Hose, Franziska Jundt, Regina Ebert
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (4): 1150–1164.
https://doi.org/10.1158/2767-9764.CRC-23-0411
Published: 29 April 2024
View article titled, Modeling Myeloma Dissemination <em>In Vitro</em> with hMSC-interacting Subpopulations of INA-6 Cells and Their Aggregation/Detachment Dynamics
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Includes: Multimedia, Supplementary data
Journal Articles

Proteasome Inhibition Reprograms Chromatin Landscape in Breast Cancer

H. Karimi Kinyamu, Brian D. Bennett, James M. Ward, Trevor K. Archer
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (4): 1082–1099.
https://doi.org/10.1158/2767-9764.CRC-23-0476
Published: 16 April 2024
View article titled, Proteasome Inhibition Reprograms Chromatin Landscape in Breast Cancer
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Includes: Supplementary data
Journal Articles

Spectral Flow Cytometry Methods and Pipelines for Comprehensive Immunoprofiling of Human Peripheral Blood and Bone Marrow

Milos Spasic, Esther R. Ogayo, Adrienne M. Parsons, Elizabeth A. Mittendorf, Peter van Galen, Sandra S. McAllister
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (3): 895–910.
https://doi.org/10.1158/2767-9764.CRC-23-0357
Published: 25 March 2024
View article titled, Spectral Flow Cytometry Methods and Pipelines for Comprehensive Immunoprofiling of Human Peripheral Blood and Bone Marrow
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Includes: Supplementary data
Journal Articles

Natural History of Germline BRCA1 Mutated and BRCA Wild-type Triple-negative Breast Cancer

Nilesh Gardi, Rohan Chaubal, Pallavi Parab, Sunil Pachakar, Suyash Kulkarni, Tanuja Shet, Shalaka Joshi, Yogesh Kembhavi, Pratik Chandrani, Jelmar Quist, Pradnya Kowtal, Anita Grigoriadis, Rajiv Sarin, Raman Govindarajan, Sudeep Gupta
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (2): 404–417.
https://doi.org/10.1158/2767-9764.CRC-23-0277
Published: 14 February 2024
View article titled, Natural History of Germline <em>BRCA1</em> Mutated and <em>BRCA</em> Wild-type Triple-negative Breast Cancer
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Includes: Supplementary data
Journal Articles

Single-cell Multiomics Analysis of Myelodysplastic Syndromes and Clinical Response to Hypomethylating Therapy

Ignacio Campillo-Marcos, Marta Casado-Pelaez, Veronica Davalos, Gerardo Ferrer, Caterina Mata, Elisabetta Mereu, Gael Roué, David Valcárcel, Antonieta Molero, Lurdes Zamora, Blanca Xicoy, Laura Palomo, Pamela Acha, Ana Manzanares, Magnus Tobiasson, Eva Hellström-Lindberg, Francesc Solé, Manel Esteller
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (2): 365–377.
https://doi.org/10.1158/2767-9764.CRC-23-0389
Published: 12 February 2024
View article titled, Single-cell Multiomics Analysis of Myelodysplastic Syndromes and Clinical Response to Hypomethylating Therapy
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Includes: Supplementary data
Journal Articles

A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Cankun Wang, Anjun Ma, Yingjie Li, Megan E. McNutt, Shiqi Zhang, Jiangjiang Zhu, Rebecca Hoyd, Caroline E. Wheeler, Lary A. Robinson, Carlos H.F. Chan, Yousef Zakharia, Rebecca D. Dodd, Cornelia M. Ulrich, Sheetal Hardikar, Michelle L. Churchman, Ahmad A. Tarhini, Eric A. Singer, Alexandra P. Ikeguchi, Martin D. McCarter, Nicholas Denko, Gabriel Tinoco, Marium Husain, Ning Jin, Afaf E.G. Osman, Islam Eljilany, Aik Choon Tan, Samuel S. Coleman, Louis Denko, Gregory Riedlinger, Bryan P. Schneider, Daniel Spakowicz, Qin Ma, the exORIEN Consortium
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (2): 293–302.
https://doi.org/10.1158/2767-9764.CRC-23-0213
Published: 05 February 2024
View article titled, A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset
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Includes: Supplementary data
Journal Articles

A Revised Molecular Model of Ovarian Cancer Biomarker CA125 (MUC16) Enabled by Long-read Sequencing

Chien-Wei Wang, Simon D. Weaver, Nicha Boonpattrawong, Naviya Schuster-Little, Manish Patankar, Rebecca J. Whelan
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (1): 253–263.
https://doi.org/10.1158/2767-9764.CRC-23-0327
Published: 31 January 2024
View article titled, A Revised Molecular Model of Ovarian Cancer Biomarker CA125 (MUC16) Enabled by Long-read Sequencing
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Includes: Supplementary data
Journal Articles

Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma

Felicia Gomez, Bryan Fisk, Joshua F. McMichael, Matthew Mosior, Jennifer A. Foltz, Zachary L. Skidmore, Eric J. Duncavage, Christopher A. Miller, Haley Abel, Yi-Shan Li, David A. Russler-Germain, Kilannin Krysiak, Marcus P. Watkins, Cody A. Ramirez, Alina Schmidt, Fernanda Martins Rodrigues, Lee Trani, Ajay Khanna, Julia A. Wagner, Robert S. Fulton, Catrina C. Fronick, Michelle D. O'Laughlin, Timothy Schappe, Amanda F. Cashen, Neha Mehta-Shah, Brad S. Kahl, Jason Walker, Nancy L. Bartlett, Malachi Griffith, Todd A. Fehniger, Obi L. Griffith
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2312–2330.
https://doi.org/10.1158/2767-9764.CRC-23-0140
Published: 15 November 2023
View article titled, Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma
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Includes: Supplementary data
Journal Articles

Pathogenic Germline Variants in BRCA1/2 and p53 Identified by Real-world Comprehensive Cancer Genome Profiling Tests in Asian Patients

Tomoyuki Satake, Shunsuke Kondo, Noriko Tanabe, Takaaki Mizuno, Yuki Katsuya, Jun Sato, Takafumi Koyama, Tatsuya Yoshida, Makoto Hirata, Noboru Yamamoto
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2302–2311.
https://doi.org/10.1158/2767-9764.CRC-23-0018
Published: 14 November 2023
View article titled, Pathogenic Germline Variants in BRCA1/2 and p53 Identified by Real-world Comprehensive Cancer Genome Profiling Tests in Asian Patients
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Includes: Supplementary data
Journal Articles

Risk Prediction of Metachronous Colorectal Cancer from Molecular Features of Adenomas: A Nested Case–Control Study

Henriette C. Jodal, Eddymurphy U. Akwiwu, Margriet Lemmens, Pien M. Delis-van Diemen, Dagmar Klotz, Leticia G. Leon, Soufyan Lakbir, Meike de Wit, Remond J.A. Fijneman, Monique E. van Leerdam, Evelien Dekker, Manon C.W. Spaander, Gerrit A. Meijer, Magnus Løberg, Veerle M.H. Coupé, Mette Kalager, Beatriz Carvalho
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2292–2301.
https://doi.org/10.1158/2767-9764.CRC-23-0186
Published: 13 November 2023
View article titled, Risk Prediction of Metachronous Colorectal Cancer from Molecular Features of Adenomas: A Nested Case–Control Study
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Includes: Supplementary data
Journal Articles

Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients

Wei Tang, Flora Zhang, Jung S. Byun, Tiffany H. Dorsey, Harris G. Yfantis, Anuoluwapo Ajao, Huaitian Liu, Margaret S. Pichardo, Catherine M. Pichardo, Alexandra R. Harris, Xiaohong R. Yang, Jonine D. Figueroa, Shahin Sayed, Francis W. Makokha, Stefan Ambs
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2244–2255.
https://doi.org/10.1158/2767-9764.CRC-23-0165
Published: 07 November 2023
View article titled, Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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Includes: Supplementary data
Journal Articles

Concordance and Clinical Significance of Genomic Alterations in Progressive Tumor Tissue and Matched Circulating Tumor DNA in Aggressive-variant Prostate Cancer

Ruiliang Wang, Qiufan Xu, Hanxu Guo, Guanjie Yang, Jun Zhang, Hong Wang, Tianyuan Xu, Changcheng Guo, Jing Yuan, Yanyan He, Xiaoying Zhang, Hongliang Fu, Guang Xu, Binghui Zhao, Jun Xie, Tingting Zhao, Longfei Huang, Jiansheng Zhang, Bo Peng, Xudong Yao, Bin Yang
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2221–2232.
https://doi.org/10.1158/2767-9764.CRC-23-0175
Published: 03 November 2023
View article titled, Concordance and Clinical Significance of Genomic Alterations in Progressive Tumor Tissue and Matched Circulating Tumor DNA in Aggressive-variant Prostate Cancer
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Includes: Supplementary data
Journal Articles

Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project

Alexander Semaan, Vincent Bernard, Justin Wong, Yuki Makino, Daniel B. Swartzlander, Kimal I. Rajapakshe, Jaewon J. Lee, Adam Officer, Christian Max Schmidt, Howard H. Wu, Courtney L. Scaife, Kajsa E. Affolter, Daniela Nachmanson, Matthew A. Firpo, Michele Yip-Schneider, Andrew M. Lowy, Olivier Harismendy, Subrata Sen, Anirban Maitra, Yasminka A. Jakubek, Paola A. Guerrero
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (10): 2062–2073.
https://doi.org/10.1158/2767-9764.CRC-22-0419
Published: 10 October 2023
View article titled, Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project
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Includes: Supplementary data
Journal Articles

Characterizing the Immune Microenvironment and Neoantigen Landscape of Hürthle Cell Carcinoma to Identify Potential Immunologic Vulnerabilities

Ian Ganly, Fengshen Kuo, Vladimir Makarov, Yiyu Dong, Ronald Ghossein, Bin Xu, Luc G.T. Morris, Timothy A. Chan
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (7): 1409–1422.
https://doi.org/10.1158/2767-9764.CRC-23-0120
Published: 31 July 2023
View article titled, Characterizing the Immune Microenvironment and Neoantigen Landscape of Hürthle Cell Carcinoma to Identify Potential Immunologic Vulnerabilities
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Includes: Supplementary data
Journal Articles

Immunologic Characterization and T cell Receptor Repertoires of Expanded Tumor-infiltrating Lymphocytes in Patients with Renal Cell Carcinoma

Moon Hee Lee, Jason Theodoropoulos, Jani Huuhtanen, Dipabarna Bhattacharya, Petrus Järvinen, Sara Tornberg, Harry Nísen, Tuomas Mirtti, Ilona Uski, Anita Kumari, Karita Peltonen, Arianna Draghi, Marco Donia, Anna Kreutzman, Satu Mustjoki
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (7): 1260–1276.
https://doi.org/10.1158/2767-9764.CRC-22-0514
Published: 18 July 2023
View article titled, Immunologic Characterization and T cell Receptor Repertoires of Expanded Tumor-infiltrating Lymphocytes in Patients with Renal Cell Carcinoma
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Includes: Supplementary data
Journal Articles

Enhanced Detection of Landmark Minimal Residual Disease in Lung Cancer Using Cell-free DNA Fragmentomics

Siwei Wang, Zhijun Xia, Jing You, Xiaolan Gu, Fanchen Meng, Peng Chen, Wanxiangfu Tang, Hua Bao, Jingyuan Zhang, Xue Wu, Yang Shao, Jie Wang, Xianglin Zuo, Lin Xu, Rong Yin
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (5): 933–942.
https://doi.org/10.1158/2767-9764.CRC-22-0363
Published: 30 May 2023
View article titled, Enhanced Detection of Landmark Minimal Residual Disease in Lung Cancer Using Cell-free DNA Fragmentomics
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Includes: Supplementary data
Journal Articles

Dissecting the Origin of Heterogeneity in Uterine and Ovarian Carcinosarcomas

Anne-Sophie Sertier, Anthony Ferrari, Roxane M. Pommier, Isabelle Treilleux, Sandrine Boyault, Mojgan Devouassoux-Shisheboran, Janice Kielbassa, Emilie Thomas, Laurie Tonon, Vincent Le Texier, Amandine Charreton, Anne-Pierre Morel, Anne Floquet, Florence Joly, Dominique Berton-Rigaud, Gwenaël Ferron, Laurent Arnould, Sabrina Croce, Guillaume Bataillon, Pierre Saintigny, Eliane Mery-Lamarche, Christine Sagan, Aruni P. Senaratne, Ivo G. Gut, Fabien Calvo, Alain Viari, Maria Ouzounova, Isabelle Ray-Coquard, Alain Puisieux
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (5): 830–841.
https://doi.org/10.1158/2767-9764.CRC-22-0520
Published: 10 May 2023
View article titled, Dissecting the Origin of Heterogeneity in Uterine and Ovarian Carcinosarcomas
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Includes: Supplementary data