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Journal Articles

Pan-Cancer Analysis of Homologous Recombination Deficiency in Cell Lines

Anne E. Dodson, Sol Shenker, Pamela Sullivan, Sumeet U. Nayak, Chris Middleton, Michael McGuire, Edmond Chipumuro, Yuji Mishina, Erica R. Tobin, Louise Cadzow, Andrew A. Wylie, Dipen Sangurdekar
Journal: Cancer Research Communications
Cancer Research Communications (2024) 4 (12): 3084–3098.
https://doi.org/10.1158/2767-9764.CRC-24-0316
Published: 06 December 2024
View article titled, Pan-Cancer Analysis of Homologous Recombination Deficiency in Cell Lines
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Includes: Supplementary data
Journal Articles

Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data

Rebecca Hoyd, Caroline E. Wheeler, YunZhou Liu, Malvenderjit S. Jagjit Singh, Mitchell Muniak, Ning Jin, Nicholas C. Denko, David P. Carbone, Xiaokui Mo, Daniel J. Spakowicz
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (11): 2375–2385.
https://doi.org/10.1158/2767-9764.CRC-22-0435
Published: 21 November 2023
View article titled, Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data
Open the PDF for Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data in another window
Includes: Supplementary data
Journal Articles

The Identification of CELSR3 and Other Potential Cell Surface Targets in Neuroendocrine Prostate Cancer

Lucie Van Emmenis, Sheng-Yu Ku, Kaitlyn Gayvert, Jonathan R. Branch, Nicholas J. Brady, Subhasree Basu, Michael Russell, Joanna Cyrta, Aram Vosoughi, Verena Sailer, Hussein Alnajar, Etienne Dardenne, Elena Koumis, Loredana Puca, Brian D. Robinson, Michael D. Feldkamp, Annmarie Winkis, Nathan Majewski, Brent Rupnow, Marco M. Gottardis, Olivier Elemento, Mark A. Rubin, Himisha Beltran, David S. Rickman
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (8): 1447–1459.
https://doi.org/10.1158/2767-9764.CRC-22-0491
Published: 03 August 2023
View article titled, The Identification of CELSR3 and Other Potential Cell Surface Targets in Neuroendocrine Prostate Cancer
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Includes: Supplementary data
Journal Articles

Probabilistic Mixture Models Improve Calibration of Panel-derived Tumor Mutational Burden in the Context of both Tumor-normal and Tumor-only Sequencing

Jordan Anaya, John-William Sidhom, Craig A. Cummings, Alexander S. Baras, for AACR Project GENIE Consortium
Journal: Cancer Research Communications
Cancer Research Communications (2023) 3 (3): 501–509.
https://doi.org/10.1158/2767-9764.CRC-22-0339
Published: 28 March 2023
View article titled, Probabilistic Mixture Models Improve Calibration of Panel-derived Tumor Mutational Burden in the Context of both Tumor-normal and Tumor-only Sequencing
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Includes: Supplementary data
Journal Articles

An Informatics Bridge to Improve the Design and Efficiency of Phase I Clinical Trials for Anticancer Drug Combinations

Lei Wang, Lai Wei, Shijun Zhang, Lijun Cheng, Aditi Shendre, Williams Carson, James L. Chen, Dwight Owen, Megan Gregory, Lang Li
Journal: Cancer Research Communications
Cancer Research Communications (2022) 2 (9): 929–936.
https://doi.org/10.1158/2767-9764.CRC-22-0160
Published: 06 September 2022
View article titled, An Informatics Bridge to Improve the Design and Efficiency of Phase I Clinical Trials for Anticancer Drug Combinations
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Includes: Supplementary data
Journal Articles

Identification of Drug–Cancer Associations: A Nationwide Screening Study

Kasper Bruun Kristensen, Søren Friis, Lars Christian Lund, Jesper Hallas, Chris R. Cardwell, Bettina K. Andreassen, Laurel A. Habel, Anton Pottegård
Journal: Cancer Research Communications
Cancer Research Communications (2022) 2 (6): 552–560.
https://doi.org/10.1158/2767-9764.CRC-22-0026
Published: 29 June 2022
View article titled, Identification of Drug–Cancer Associations: A Nationwide Screening Study
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Includes: Supplementary data