1-14 of 14
Zubair Khan
Close
Save search
Follow your search
Access your saved searches in your account
Would you like to receive an alert when new items match your search?
Close Modal
Sort by
Journal Articles

Abstract 3320: Discovery and development of DNA methylation biomarkers in human papillomavirus related oropharyngeal squamous cell carcinoma

Free
Shuling Ren, Daria A. Gaykalova, Theresa W. Guo, Alexander V. Favorov, Elana J. Fertig, Zubair Khan, Peter M. DeJong, Mizuo Ando, Chao Liu, Akihiro Sakai, Takahito Fukusumi, Sunny Haft, Sayed Sadat, J Silvio Gutkind, Wayne M. Koch, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3320.
https://doi.org/10.1158/1538-7445.AM2018-3320
Published: 01 July 2018
View articletitled, Abstract 3320: Discovery and development of DNA methylation biomarkers in human papillomavirus related oropharyngeal squamous cell carcinoma
Journal Articles

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Free
Dylan Z. Kelley, Emily L. Flam, Evgeny Izumchenko, Ludmila V. Danilova, Hildegard A. Wulf, Theresa Guo, Dzov A. Singman, Bahman Afsari, Alyza M. Skaist, Michael Considine, Jane A. Welch, Elena Stavrovskaya, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah J. Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (23): 6538–6550.
https://doi.org/10.1158/0008-5472.CAN-17-0833
Published: 30 November 2017
View articletitled, Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Open the PDF for Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks in another window
Includes: Supplementary data
Journal Articles

A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers

Free
Theresa Guo, Akihiro Sakai, Bahman Afsari, Michael Considine, Ludmila Danilova, Alexander V. Favorov, Srinivasan Yegnasubramanian, Dylan Z. Kelley, Emily Flam, Patrick K. Ha, Zubair Khan, Sarah J. Wheelan, J. Silvio Gutkind, Elana J. Fertig, Daria A. Gaykalova, Joseph Califano
Journal: Cancer Research
Cancer Res (2017) 77 (19): 5248–5258.
https://doi.org/10.1158/0008-5472.CAN-16-3106
Published: 01 October 2017
View articletitled, A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers
Open the PDF for A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers in another window
Includes: Supplementary data
Journal Articles

Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples

Free
Dylan Z. Kelley, Emily L. Flam, Hildegard A. Wulf, Theresa Guo, Evgeny Izumchenko, Dzov A. Singman, Ludmila V. Danilova, Elena D. Stavrovskaya, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2424.
https://doi.org/10.1158/1538-7445.AM2017-2424
Published: 01 July 2017
View articletitled, Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples
Journal Articles

Abstract 3353: An epigenetic biomarker panel in HPV related oropharyngeal squamous cell carcinoma

Free
Shuling Ren, Daria A. Gaykalova, Theresa Guo, Zubair Khan, Mizuo Ando, Sunny Haft, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3353.
https://doi.org/10.1158/1538-7445.AM2017-3353
Published: 01 July 2017
View articletitled, Abstract 3353: An epigenetic biomarker panel in HPV related oropharyngeal squamous cell carcinoma
Journal Articles

Abstract 2880: The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma

Free
Daria A. Gaykalova, Dylan Kelley, Theresa Guo, Craig Bohrson, Ilse Tiscareno, Veronika Zizkova, Michael Considine, Ludmila Danilova, Emily Flam, Justin Bishop, Julie Ahn, Samantha Merritt, Marla Goldsmith, Chi Zhang, Wayne Koch, William Westra, Zubair Khan, Michael Ochs, Sarah Wheelan, Elana Fertig, Joseph Califano
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2880.
https://doi.org/10.1158/1538-7445.AM2016-2880
Published: 15 July 2016
View articletitled, Abstract 2880: The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma
Journal Articles

Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma

Free
Theresa Guo, Daria Gaykalova, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Elana Fertig, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 4807.
https://doi.org/10.1158/1538-7445.AM2015-4807
Published: 01 August 2015
View articletitled, Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma
Journal Articles

Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC

Free
Daria A. Gaykalova, Veronika Zizkova, Ilse Tiscareno, Yingying Wei, Rajita Vatapalli, Patrick T. Hennessey, Julie Ahn, Ludmila V. Danilova, Zubair Khan, Justin A. Bishop, Wayne M. Koch, William H. Westra, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 815.
https://doi.org/10.1158/1538-7445.AM2015-815
Published: 01 August 2015
View articletitled, Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC
Journal Articles

Abstract 3409: Transcription factor signature of head and neck squamous cell carcinoma

Free
Daria A. Gaykalova, Judi Manola, Hiroyuki Ozawa, Kathryn Morton, Justin Bishop, Michael Considine, Rajni Sharma, Chi Zhang, Elana Fertig, Marietta Tan, Patrick Hennessey, Julie Ahn, Wayne Koch, Zubair Khan, Christine H. Chung, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 3409.
https://doi.org/10.1158/1538-7445.AM2014-3409
Published: 01 October 2014
View articletitled, Abstract 3409: Transcription factor signature of head and neck squamous cell carcinoma
Journal Articles

Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.

Free
Daria A. Gaykalova, Rajita Vatapalli, Yingying Wei, Hao Wang, Patrick Hennessey, Ryan Li, Chi Zhang, Marietta Tan, Zubair Khan, William Westra, Tanbir Khan, David Zaboli, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 3554.
https://doi.org/10.1158/1538-7445.AM2013-3554
Published: 15 April 2013
View articletitled, Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.
Journal Articles

Abstract 641: Correlation of methylation status of deep surgical margins with the local reccurence of head and neck squamous cell carcinoma.

Free
Masamichi Hayashi, Gaosong Wu, Xiaofei Chang, Xiufeng Li, Julie Ahn, Zubair Khan, Belinda Akpeng, Jong–Lyel Roh, Wayne Koch
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 641.
https://doi.org/10.1158/1538-7445.AM2013-641
Published: 15 April 2013
View articletitled, Abstract 641: Correlation of methylation status of deep surgical margins with the local reccurence of head and neck squamous cell carcinoma.
Journal Articles

Abstract 4097: Integrative analysis of epigenetic and transcriptional alterations in head and neck squamous cell carcinomas

Free
Daria A. Gaykalova, Rajita Vatapalli, Yingying Wei, Patrick Hennessey, Zubair Khan, William Westra, Tanbir Khan, David Zaboli, David Sidransky, Michael Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 4097.
https://doi.org/10.1158/1538-7445.AM2012-4097
Published: 15 April 2012
View articletitled, Abstract 4097: Integrative analysis of epigenetic and transcriptional alterations in head and neck squamous cell carcinomas
Journal Articles

Abstract 4041: Identification of GNG7 as an epigenetically silenced gene in head and neck cancer by gene expression profiling

Free
Semra Demokan, Alice Y. Chuang, Xiaofei Chang, Tanbir Khan, Ian M. Smith, Kavita M. Pattani, Santanu Dasgupta, Shahnaz Begum, Zubair Khan, Nanette J. Liegeois, William H. Westra, David Sidransky, Wayne Koch, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 4041.
https://doi.org/10.1158/1538-7445.AM2012-4041
Published: 15 April 2012
View articletitled, Abstract 4041: Identification of GNG7 as an epigenetically silenced gene in head and neck cancer by gene expression profiling
Journal Articles

Abstract 723: Detection of TIMP3 promoter hypermethylation in salivary rinse as an independent predictor of local recurrence-free survival in head and neck cancer

Free
Wenyue Sun, David Zaboli, Hao Wang, Yan Liu, Demetri Arnaoutakis, Tanbir Khan, Zubair Khan, Wayne Koch, Joseph Califano
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 723.
https://doi.org/10.1158/1538-7445.AM2012-723
Published: 15 April 2012
View articletitled, Abstract 723: Detection of TIMP3 promoter hypermethylation in salivary rinse as an independent predictor of local recurrence-free survival in head and neck cancer