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Youqiong Ye
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Journal Articles

The Web-Based Portal SpatialTME Integrates Histological Images with Single-Cell and Spatial Transcriptomics to Explore the Tumor Microenvironment

Available to Purchase
Jintong Shi, Xia Wei, Zhenzhen Xun, Xinyu Ding, Yao Liu, Lianxin Liu, Youqiong Ye
Journal: Cancer Research
Cancer Res (2024) 84 (8): 1210–1220.
https://doi.org/10.1158/0008-5472.CAN-23-2650
Published: 15 April 2024
View articletitled, The Web-Based Portal SpatialTME Integrates Histological Images with Single-Cell and Spatial Transcriptomics to Explore the Tumor Microenvironment
Open the PDF for The Web-Based Portal SpatialTME Integrates Histological Images with Single-Cell and Spatial Transcriptomics to Explore the Tumor Microenvironment in another window
Includes: Supplementary data
Journal Articles

Integration of Pan-Cancer Single-Cell and Spatial Transcriptomics Reveals Stromal Cell Features and Therapeutic Targets in Tumor Microenvironment

Available to Purchase
Yanhua Du, Jintong Shi, Jiaxin Wang, Zhenzhen Xun, Zhuo Yu, Hongxiang Sun, Rujuan Bao, Junke Zheng, Zhigang Li, Youqiong Ye
Journal: Cancer Research
Cancer Res (2024) 84 (2): 192–210.
https://doi.org/10.1158/0008-5472.CAN-23-1418
Published: 16 January 2024
View articletitled, Integration of Pan-Cancer Single-Cell and Spatial Transcriptomics Reveals Stromal Cell Features and Therapeutic Targets in Tumor Microenvironment
Open the PDF for Integration of Pan-Cancer Single-Cell and Spatial Transcriptomics Reveals Stromal Cell Features and Therapeutic Targets in Tumor Microenvironment in another window
Includes: Supplementary data
Journal Articles

Abstract P4-08-23: ZHX2 promotes HIF1α oncogenic signaling in triple-negative breast cancer

Free
Chengheng Liao, Wentong Fang, Rachel Shi, Jeremy Simon, Travis Ptacek, Giada Zurlo, Youqiong Ye, Leng Han, Cheng Fan, Lei Bao, Christopher Llynard Ortiz, Hong-Rui Lin, Ujjawal Manocha, Weibo Luo, Yan Peng, William Y Kim, Lee-Wei Yang, Qing Zhang
Journal: Cancer Research
Cancer Res (2023) 83 (5_Supplement): P4-08-23.
https://doi.org/10.1158/1538-7445.SABCS22-P4-08-23
Published: 01 March 2023
View articletitled, Abstract P4-08-23: ZHX2 promotes HIF1α oncogenic signaling in triple-negative breast cancer
Journal Articles

Characterization of Immune-Related Alternative Polyadenylation Events in Cancer Immunotherapy

Available to Purchase
Gaoyang Wang, Zuozhong Xie, Juan Su, Meishan Chen, Yanhua Du, Qian Gao, Guanxiong Zhang, Hailun Zhang, Xiang Chen, Hong Liu, Leng Han, Youqiong Ye
Journal: Cancer Research
Cancer Res (2022) 82 (19): 3474–3485.
https://doi.org/10.1158/0008-5472.CAN-22-1417
Published: 04 October 2022
View articletitled, Characterization of Immune-Related Alternative Polyadenylation Events in Cancer Immunotherapy
Open the PDF for Characterization of Immune-Related Alternative Polyadenylation Events in Cancer Immunotherapy in another window
Includes: Supplementary data
Journal Articles

RNA Helicase DHX37 Facilitates Liver Cancer Progression by Cooperating with PLRG1 to Drive Superenhancer-Mediated Transcription of Cyclin D1

Open Access
Zhen Liu, Youqiong Ye, Yizhe Liu, Yanfang Liu, Huifang Chen, Mengting Shen, Zhen Wang, Shenglin Huang, Leng Han, Zhiao Chen, Xianghuo He
Journal: Cancer Research
Cancer Res (2022) 82 (10): 1937–1952.
https://doi.org/10.1158/0008-5472.CAN-21-3038
Published: 16 May 2022
View articletitled, RNA Helicase DHX37 Facilitates Liver Cancer Progression by Cooperating with PLRG1 to Drive Superenhancer-Mediated Transcription of Cyclin D1
Open the PDF for RNA Helicase DHX37 Facilitates Liver Cancer Progression by Cooperating with PLRG1 to Drive Superenhancer-Mediated Transcription of Cyclin D1 in another window
Includes: Supplementary data
Journal Articles

Genetic, Pharmacogenomic, and Immune Landscapes of Enhancer RNAs Across Human Cancers

Available to Purchase
Zhao Zhang, Mei Luo, Qiang Li, Yuan Liu, Charles Lussier, Jian Zhang, Youqiong Ye, An-Yuan Guo, Leng Han
Journal: Cancer Research
Cancer Res (2022) 82 (5): 785–790.
https://doi.org/10.1158/0008-5472.CAN-21-2058
Published: 03 March 2022
View articletitled, Genetic, Pharmacogenomic, and Immune Landscapes of Enhancer RNAs Across Human Cancers
Open the PDF for Genetic, Pharmacogenomic, and Immune Landscapes of Enhancer RNAs Across Human Cancers in another window
Includes: Supplementary data
Journal Articles

MEK Inhibition Remodels the Immune Landscape of Mutant KRAS Tumors to Overcome Resistance to PARP and Immune Checkpoint Inhibitors

Available to Purchase
Bin Yang, Xi Li, Yu Fu, Ensong Guo, Youqiong Ye, Fuxia Li, Si Liu, Rourou Xiao, Chen Liu, Funian Lu, Jia Huang, Tianyu Qin, Leng Han, Guang Peng, Gordon B. Mills, Chaoyang Sun, Gang Chen
Journal: Cancer Research
Cancer Res (2021) 81 (10): 2714–2729.
https://doi.org/10.1158/0008-5472.CAN-20-2370
Published: 15 May 2021
View articletitled, MEK Inhibition Remodels the Immune Landscape of Mutant KRAS Tumors to Overcome Resistance to PARP and Immune Checkpoint Inhibitors
Open the PDF for MEK Inhibition Remodels the Immune Landscape of Mutant KRAS Tumors to Overcome Resistance to PARP and Immune Checkpoint Inhibitors in another window
Includes: Supplementary data
Journal Articles

Abstract 1412: Comprehensive characterization of clock genes in human cancers

Free
Youqiong Ye, Yu Xiang, Joseph Takahashi, Gordon Mills, Seung-Hee Yoo, Leng Han
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 1412.
https://doi.org/10.1158/1538-7445.AM2018-1412
Published: 01 July 2018
View articletitled, Abstract 1412: Comprehensive characterization of clock genes in human cancers