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Journal Articles

Genetic variants that impact alternative polyadenylation in cancer represent candidate causal risk loci

Bin Li, Yimin Cai, Can Chen, Gaoyuan Li, Ming Zhang, Zequn Lu, Fuwei Zhang, Jinyu Huang, Linyun Fan, Caibo Ning, Yanmin Li, Wenzhuo Wang, Hui Geng, Yizhuo Liu, Shuoni Chen, Hanting Li, Shuhui Yang, Heng Zhang, Wen Tian, Zhongchao Zhu, Bin Xu, Heng Li, Haijie Li, Meng Jin, Xiaoyang Wang, Shaokai Zhang, Jiuyang Liu, Chaoqun Huang, Xiaojun Yang, Yongchang Wei, Ying Zhu, Jianbo Tian, Xiaoping Miao
Journal: Cancer Research
Cancer Res (2023)
https://doi.org/10.1158/0008-5472.CAN-23-0251
Published: 05 September 2023
View article titled, Genetic variants that impact alternative polyadenylation in cancer represent candidate causal risk loci
Open the PDF for Genetic variants that impact alternative polyadenylation in cancer represent candidate causal risk loci in another window
Includes: Supplementary data
Journal Articles

Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors

Sammy Ferri-Borgogno, Ying Zhu, Jianting Sheng, Jared K. Burks, Javier A. Gomez, Kwong Kwok Wong, Stephen T.C. Wong, Samuel C. Mok
Journal: Cancer Research
Cancer Res (2023) 83 (9): 1503–1516.
https://doi.org/10.1158/0008-5472.CAN-22-1821
Published: 02 May 2023
View article titled, Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors
Open the PDF for Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors in another window
Includes: Supplementary data
Journal Articles

Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma

Lijun Yao, Julia T. Wang, Reyka G. Jayasinghe, Julie O'Neal, Chia-Feng Tsai, Michael P. Rettig, Yizhe Song, Ruiyang Liu, Yanyan Zhao, Omar M. Ibrahim, Mark A. Fiala, Julie M. Fortier, Siqi Chen, Leah Gehrs, Fernanda Martins Rodrigues, Michael C. Wendl, Daniel Kohnen, Andrew Shinkle, Song Cao, Steven M. Foltz, Daniel Cui Zhou, Erik Storrs, Matthew A. Wyczalkowski, Smrithi Mani, Scott R. Goldsmith, Ying Zhu, Mark Hamilton, Tao Liu, Feng Chen, Ravi Vij, Li Ding, John F. DiPersio
Journal: Cancer Research
Cancer Res (2023) 83 (8): 1214–1233.
https://doi.org/10.1158/0008-5472.CAN-22-1769
Published: 14 April 2023
View article titled, Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma
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Includes: Supplementary data
Journal Articles

Abstract LB217: A novel bispecific LILRB4/CD3 antibody with potent killing of monocytic acute myeloid leukemia cells

Tao Huang, Kyu Hong, Krista McCutcheon, Jing-Tyan Ma, Ying Zhu, Mi Deng, Cheng Cheng Zhang, Paul Woodard, Hong Xiang, Xiao Min Schebye, X. Charlene Liao
Journal: Cancer Research
Cancer Res (2023) 83 (8_Supplement): LB217.
https://doi.org/10.1158/1538-7445.AM2023-LB217
Published: 14 April 2023
View article titled, Abstract LB217: A novel bispecific LILRB4/CD3 antibody with potent killing of monocytic acute myeloid leukemia cells
Journal Articles

Pan-Cancer Analysis of Microbiome Quantitative Trait Loci

Can Chen, Yimin Cai, Yizhuo Liu, Shuoni Chen, Yanmin Li, Fuwei Zhang, Ming Zhang, Zequn Lu, Pingting Ying, Jinyu Huang, Linyun Fan, Xiaomin Cai, Caibo Ning, Wenzhuo Wang, Yuan Jiang, Heng Zhang, Shuhui Yang, Zhihua Wang, Xiaoyang Wang, Shaokai Zhang, Chaoqun Huang, Bin Xu, Zhenming Fu, Qibin Song, Mingjuan Jin, Kun Chen, Hongda Chen, Min Dai, Xiaoping Miao, Xiaojun Yang, Ying Zhu, Jianbo Tian
Journal: Cancer Research
Cancer Res (2022) 82 (19): 3449–3456.
https://doi.org/10.1158/0008-5472.CAN-22-1854
Published: 04 October 2022
View article titled, Pan-Cancer Analysis of Microbiome Quantitative Trait Loci
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Includes: Supplementary data
Journal Articles

Mitochondrial Micropeptide STMP1 Enhances Mitochondrial Fission to Promote Tumor Metastasis

Chen Xie, Feng-Yi Wang, Ye Sang, Bin Chen, Jia-Hui Huang, Feng-Jun He, Hui Li, Ying Zhu, Xingguo Liu, Shi-Mei Zhuang, Jian-Hong Fang
Journal: Cancer Research
Cancer Res (2022) 82 (13): 2431–2443.
https://doi.org/10.1158/0008-5472.CAN-21-3910
Published: 05 July 2022
View article titled, Mitochondrial Micropeptide STMP1 Enhances Mitochondrial Fission to Promote Tumor Metastasis
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Includes: Supplementary data
Journal Articles

Abstract 633: Delineating tumor-neural communication in brain metastasis with spatiotemporal transcriptomic analysis and multi-cellular crosstalk modeling

Xin Wang, Ying Zhu, Jianting Sheng, Hong Zhao, Stephen Wong
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 633.
https://doi.org/10.1158/1538-7445.AM2022-633
Published: 15 June 2022
View article titled, Abstract 633: Delineating tumor-neural communication in brain metastasis with spatiotemporal transcriptomic analysis and multi-cellular crosstalk modeling
Journal Articles

Aberrant RNA Splicing Is a Primary Link between Genetic Variation and Pancreatic Cancer Risk

Jianbo Tian, Can Chen, Meilin Rao, Ming Zhang, Zequn Lu, Yimin Cai, Pingting Ying, Bin Li, Haoxue Wang, Lu Wang, Yao Li, Jinyu Huang, Linyun Fan, Xiaomin Cai, Caibo Ning, Yanmin Li, Fuwei Zhang, Wenzhuo Wang, Yuan Jiang, Yizhuo Liu, Min Wang, Heng Li, Chaoqun Huang, Zhiyong Yang, Jiang Chang, Ying Zhu, Xiaojun Yang, Xiaoping Miao
Journal: Cancer Research
Cancer Res (2022) 82 (11): 2084–2096.
https://doi.org/10.1158/0008-5472.CAN-21-4367
Published: 06 June 2022
View article titled, Aberrant RNA Splicing Is a Primary Link between Genetic Variation and Pancreatic Cancer Risk
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Includes: Supplementary data
Journal Articles

Abstract 2749: The unique tumor immune microenvironment of clear cell ovarian carcinoma

Han T. Cun, Ying Zhu, Sammy Ferri-Borgogno, Jianting Sheng, Rita Cheng, Jae-hoon Kim, Gwan Hee Han, Stephen T. Wong, Karen H. Lu, Samuel C. Mok
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2749.
https://doi.org/10.1158/1538-7445.AM2021-2749
Published: 01 July 2021
View article titled, Abstract 2749: The unique tumor immune microenvironment of clear cell ovarian carcinoma
Journal Articles

Abstract 103: Spatially resolved transcriptomics identified distinct tumor-stroma crosstalk networks in long term ovarian cancer survivors

Sammy Ferri-Borgogno, Jianting Sheng, Ying Zhu, Kwong K. Wong, Stephen T. Wong, Samuel C. Mok
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 103.
https://doi.org/10.1158/1538-7445.AM2021-103
Published: 01 July 2021
View article titled, Abstract 103: Spatially resolved transcriptomics identified distinct tumor-stroma crosstalk networks in long term ovarian cancer survivors
Journal Articles

Abstract 3267: Identification of a novel biomarker response in a prospective clinical trial of immune checkpoint blockade in recurrent ovarian carcinoma

Han Cun, Emily M. Hinchcliff, Ying Zhu, Sammy Ferri-Borgogno, Rita Cheng, Jared K. Burks, Stephen T. Wong, Amir A. Jazaeri, Samuel C. Mok
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3267.
https://doi.org/10.1158/1538-7445.AM2020-3267
Published: 15 August 2020
View article titled, Abstract 3267: Identification of a novel biomarker response in a prospective clinical trial of immune checkpoint blockade in recurrent ovarian carcinoma
Journal Articles

Abstract 2856: An intelligent boosting to amplify signal with isobaric labeling (iBASIL) strategy for precise quantitative single-cell proteomics analysis

Chia-Feng Tsai, Rui Zhao, Ronald Moore, Sarah Williams, Kendall Schultz, Paul Piehowski, Ljiljana Pasa-Tolic, Karin Rodland, Richard Smith, Tujin Shi, Ying Zhu, Ying Zhu, Tao Liu
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2856.
https://doi.org/10.1158/1538-7445.AM2020-2856
Published: 15 August 2020
View article titled, Abstract 2856: An intelligent boosting to amplify signal with isobaric labeling (iBASIL) strategy for precise quantitative single-cell proteomics analysis
Journal Articles

Abstract 4441: CS3003, an HDAC6-selective inhibitor, improves anti-PD-1 immune checkpoint blockade therapy efficacy

Zhenhu Li, Zhaoxiang Ren, Jingshu Ma, Liang Tang, Liang Lu, Ying Zhu, Yunfei Wu, Tiancheng Liu, Juan Zhang, Yuanwu Bao, Kangyu Zhang, Changqing Wei, Shuhui Chen, Xinzhong Jon Wang
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 4441.
https://doi.org/10.1158/1538-7445.AM2020-4441
Published: 15 August 2020
View article titled, Abstract 4441: CS3003, an HDAC6-selective inhibitor, improves anti-PD-1 immune checkpoint blockade therapy efficacy
Journal Articles

Abstract 854: An artificial intelligence pipeline for imaging mass cytometry data analysis and its application in ovarian cancer prognostic biomarker discovery

Ying Zhu, Jianting Sheng, Sammy Ferri-Borgogno, Tsz-Lun Yeung, Jared K. Burks, Samuel C. Mok, Stephen T. Wong
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 854.
https://doi.org/10.1158/1538-7445.AM2020-854
Published: 15 August 2020
View article titled, Abstract 854: An artificial intelligence pipeline for imaging mass cytometry data analysis and its application in ovarian cancer prognostic biomarker discovery
Journal Articles

Abstract 2232: A novel immune checkpoint regulator in the ovarian cancer microenvironment

Sammy Ferri Borgogno, Tsz-Lun Yeung, Cecilia S. Leung, Chi Lam Au Yeung, Ying Zhu, Stephen T. Wong, Samuel C. Mok
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2232.
https://doi.org/10.1158/1538-7445.AM2020-2232
Published: 15 August 2020
View article titled, Abstract 2232: A novel immune checkpoint regulator in the ovarian cancer microenvironment
Journal Articles

Risk SNP-Mediated Enhancer–Promoter Interaction Drives Colorectal Cancer through Both FADS2 and AP002754.2

Jianbo Tian, Jiao Lou, Yimin Cai, Meilin Rao, Zequn Lu, Ying Zhu, Danyi Zou, Xiating Peng, Haoxue Wang, Ming Zhang, Siyuan Niu, Yue Li, Rong Zhong, Jiang Chang, Xiaoping Miao
Journal: Cancer Research
Cancer Res (2020) 80 (9): 1804–1818.
https://doi.org/10.1158/0008-5472.CAN-19-2389
Published: 04 May 2020
View article titled, Risk SNP-Mediated Enhancer–Promoter Interaction Drives Colorectal Cancer through Both <em>FADS2</em> and <em>AP002754.2</em>
Open the PDF for Risk SNP-Mediated Enhancer–Promoter Interaction Drives Colorectal Cancer through Both <em>FADS2</em> and <em>AP002754.2</em> in another window
Includes: Supplementary data
Journal Articles

Abstract 4754: CHTOP is a novel therapeutic target for chemoresistant epithelial ovarian cancer therapy

Xupeng Bai, Xiaojie Feng, Jie Ni, Julia Beretov, Junli Deng, Ying Zhu, Peter Graham, Yong Li
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4754.
https://doi.org/10.1158/1538-7445.AM2019-4754
Published: 01 July 2019
View article titled, Abstract 4754: CHTOP is a novel therapeutic target for chemoresistant epithelial ovarian cancer therapy
Journal Articles

Abstract 557: COBRA: A novel conditionally active bispecific antibody that regresses established solid tumors in mice

Danielle Dettling, Eilene Kwok, Lucy Quach, Aakash Datt, Jeremiah D. Degenhardt, Maia Vinogradova, Anand Panchal, Pui Seto, Jessica L. Krakow, Russell Wall, Brian J. Hillier, Ying Zhu, Robert B. DuBridge, Chad May
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 557.
https://doi.org/10.1158/1538-7445.AM2019-557
Published: 01 July 2019
View article titled, Abstract 557: COBRA: A novel conditionally active bispecific antibody that regresses established solid tumors in mice
Journal Articles

A Rare Missense Variant in TCF7L2 Associates with Colorectal Cancer Risk by Interacting with a GWAS-Identified Regulatory Variant in the MYC Enhancer

Jiang Chang, Jianbo Tian, Yang Yang, Rong Zhong, Jiaoyuan Li, Kan Zhai, Juntao Ke, Jiao Lou, Wei Chen, Beibei Zhu, Na Shen, Yi Zhang, Yajie Gong, Ying Zhu, Danyi Zou, Xiating Peng, Kun Huang, Xiaoping Miao
Journal: Cancer Research
Cancer Res (2018) 78 (17): 5164–5172.
https://doi.org/10.1158/0008-5472.CAN-18-0910
Published: 04 September 2018
View article titled, A Rare Missense Variant in TCF7L2 Associates with Colorectal Cancer Risk by Interacting with a GWAS-Identified Regulatory Variant in the MYC Enhancer
Open the PDF for A Rare Missense Variant in TCF7L2 Associates with Colorectal Cancer Risk by Interacting with a GWAS-Identified Regulatory Variant in the MYC Enhancer in another window
Includes: Supplementary data
Journal Articles

Abstract 5597: Targeted massively parallel sequencing for the diagnosis of hereditary neuroendocrine disorders

Trish Dwight, Anne Louise Richardson, Ying Zhu, Bruce G. Robinson, Diana E. Benn, Roderick J. Clifton-Bligh
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 5597.
https://doi.org/10.1158/1538-7445.AM2014-5597
Published: 01 October 2014
View article titled, Abstract 5597: Targeted massively parallel sequencing for the diagnosis of hereditary neuroendocrine disorders