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Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc. Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin E. Gross, Charles D. Haynes, Allison Heath, David M. Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James R. Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madala, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam Resnick, Sander Y. A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur. Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pillai, Chelsea Nichols, Stuart M. Gardos, John Philip, GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deb Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

Cancer Res (2023)

https://doi.org/10.1158/0008-5472.CAN-23-0816

Published: 05 September 2023

View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Includes: Supplementary data

Journal Articles

circFNDC3B Accelerates Vasculature Formation and Metastasis in Oral Squamous Cell Carcinoma

Xiang Li, Chenxing Wang, Hang Zhang, Yangjie Li, Deqiang Hou, Dingshan Liu, Rongyao Xu, Jie Cheng, Laikui Liu, Yu Fu, Jinhai Ye, Hongbing Jiang

Cancer Res (2023) 83 (9): 1459–1475.

https://doi.org/10.1158/0008-5472.CAN-22-2585

Published: 02 May 2023

View article titled, circFNDC3B Accelerates Vasculature Formation and Metastasis in Oral Squamous Cell Carcinoma

Includes: Supplementary data

Journal Articles

Abstract 5872: Spatial immunophenotypes contribute to predict survival of triple-negative breast cancer assessed as Miller-Payne grade 4 and N0 after neoadjuvant therapy

Jianli Ma, Yuwei Deng, Dawei Chen, Xiaomei Li, Zhiyong Yu, Haibo Wang, Lei Zhong, Yingjie Li, Chengqin Wang, Xiaoping Zhou, Xiang Li, Qingyuan Zhang, Jinming Yu

Cancer Res (2023) 83 (7_Supplement): 5872.

https://doi.org/10.1158/1538-7445.AM2023-5872

Published: 04 April 2023

View article titled, Abstract 5872: Spatial immunophenotypes contribute to predict survival of triple-negative breast cancer assessed as Miller-Payne grade 4 and N0 after neoadjuvant therapy

Journal Articles

Abstract 6778: Spatial analysis of genomic signatures on colorectal cancer pathogenesis using the GeoMx^® Digital Spatial Profiler

Xiang Li, Qinqin Zha, Brigitte Lovell, Jane Reed, Anna Juncker-Jensen, Tricia Peters, Lakshmi Chandramohan

Cancer Res (2023) 83 (7_Supplement): 6778.

https://doi.org/10.1158/1538-7445.AM2023-6778

Published: 04 April 2023

View article titled, Abstract 6778: Spatial analysis of genomic signatures on colorectal cancer pathogenesis using the GeoMx<sup>®</sup> Digital Spatial Profiler

Journal Articles

Abstract 1997: 2C5 antibody modified dendrimer-based mixed micelles for the treatment of multidrug resistant cancers

Satya Siva Kishan Yalamarty, Nina Filipczak, Xiang Li, Tanvi Vinod Pathrikar, Colin Cotter, Vladimir P. Torchilin

Cancer Res (2023) 83 (7_Supplement): 1997.

https://doi.org/10.1158/1538-7445.AM2023-1997

Published: 04 April 2023

View article titled, Abstract 1997: 2C5 antibody modified dendrimer-based mixed micelles for the treatment of multidrug resistant cancers

Journal Articles

Abstract 3725: ABI1 regulates STAT3 transcription through a DNA binding activity

Xiang Li, Neeru Arya, Baylee A. Porter, Allysa P. Kemraj, Xuesen Dong, Dominique Frueh, Alaji Bah, Leszek Kotula

Cancer Res (2023) 83 (7_Supplement): 3725.

https://doi.org/10.1158/1538-7445.AM2023-3725

Published: 04 April 2023

View article titled, Abstract 3725: ABI1 regulates STAT3 transcription through a DNA binding activity

Journal Articles

Abstract 4256: cBioPortal for Cancer Genomics

Cancer Res (2023) 83 (7_Supplement): 4256.

https://doi.org/10.1158/1538-7445.AM2023-4256

Published: 04 April 2023

View article titled, Abstract 4256: cBioPortal for Cancer Genomics

Journal Articles

Abstract 1995: 2C5-surface modified nanocarriers targeting neutrophil extracellular traps

Nina Filipczak, Xiang Li, Gaurav Rajan Saawant, Diptanshu Pardeshi, Bharat Ashok Rajmalani, Satya Siva Kishan Yalamarty, Vladimir P. Torchilin

Cancer Res (2023) 83 (7_Supplement): 1995.

https://doi.org/10.1158/1538-7445.AM2023-1995

Published: 04 April 2023

View article titled, Abstract 1995: 2C5-surface modified nanocarriers targeting neutrophil extracellular traps

Journal Articles

Abstract 6578: reVUE: repository for variants with unexpected effects

Ino de Bruijn, Aditi Gopalan, Xiang Li, Hongxin Zhang, Onur Sumer, Thomas Y. Cong, Tona Gonzalez, Madelaine Rangel, Nikolaus Schultz, Debyani Chakravarty

Cancer Res (2023) 83 (7_Supplement): 6578.

https://doi.org/10.1158/1538-7445.AM2023-6578

Published: 04 April 2023

View article titled, Abstract 6578: reVUE: repository for variants with unexpected effects

Journal Articles

SETDB1 Modulates Degradation of Phosphorylated RB and Anticancer Efficacy of CDK4/6 Inhibitors

Zhenlin Huang, Xiang Li, Bo Tang, Hao Li, Jianong Zhang, Rui Sun, Jian Ma, Yunqian Pan, Binyuan Yan, Yingke Zhou, Donglin Ding, Yuqian Yan, Rafael Jimenez, Jacob J. Orme, Xin Jin, Jinjian Yang, Haojie Huang, Zhankui Jia

Cancer Res (2023) 83 (6): 875–889.

https://doi.org/10.1158/0008-5472.CAN-22-0264

Published: 15 March 2023

View article titled, SETDB1 Modulates Degradation of Phosphorylated RB and Anticancer Efficacy of CDK4/6 Inhibitors

Includes: Supplementary data

Journal Articles

Abstract 2364: ABI1 regulates transcriptional activity of STAT3

Xiang Li, Baylee Porter, Allysa Kemraj, Alaji Bah, Marcin Kortylewski, Leszek Kotula

Cancer Res (2022) 82 (12_Supplement): 2364.

https://doi.org/10.1158/1538-7445.AM2022-2364

Published: 15 June 2022

View article titled, Abstract 2364: ABI1 regulates transcriptional activity of STAT3

Journal Articles

Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Ino de Bruijn, Xiang Li, Onur Sumer, Benjamin Gross, Robert Sheridan, Angelica Ochoa, Manda Wilson, Avery Wang, Hongxin Zhang, Aaron Lisman, Adam Abeshouse, Sander Rodenburg, Sjoerd van Hagen, Remond Fijneman, Gerrit Meijer, Nikolaus Schultz, Jianjiong Gao

Cancer Res (2022) 82 (12_Supplement): 1156.

https://doi.org/10.1158/1538-7445.AM2022-1156

Published: 15 June 2022

View article titled, Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Journal Articles

Abstract 1155: cBioPortal for cancer genomics

Cancer Res (2022) 82 (12_Supplement): 1155.

https://doi.org/10.1158/1538-7445.AM2022-1155

Published: 15 June 2022

View article titled, Abstract 1155: cBioPortal for cancer genomics

Journal Articles

Abstract 5552: Novel set of OX40 targeted antibodies and VHHs include agonists and antagonists for future development

Chenguang Cai, Xiang Li, Shin-Chen Hou, Guoqian Sun, Ying Li, Ting Yang, Fengzhi Zhang, Qi Sun, Shiying Fu, Shuang Zhao, You'you Lin, Feizheng Xue

Cancer Res (2022) 82 (12_Supplement): 5552.

https://doi.org/10.1158/1538-7445.AM2022-5552

Published: 15 June 2022

View article titled, Abstract 5552: Novel set of OX40 targeted antibodies and VHHs include agonists and antagonists for future development

Journal Articles

Abstract 6114: Prognostic value of the tumor-infiltrating lymphocytes in Miller-Payne grade 4 triple-negative breast cancer following neoadjuvant chemotherapy

Jianli Ma, Yuwei Deng, Dawei Chen, Xiaomei Li, Zhiyong Yu, Haibo Wang, Lei Zhong, Yingjie Li, Chengqin Wang, Xiaoping Zhou, Xiang Li, Qingyuan Zhang, Jinming Yu

Cancer Res (2022) 82 (12_Supplement): 6114.

https://doi.org/10.1158/1538-7445.AM2022-6114

Published: 15 June 2022

View article titled, Abstract 6114: Prognostic value of the tumor-infiltrating lymphocytes in Miller-Payne grade 4 triple-negative breast cancer following neoadjuvant chemotherapy

Journal Articles

Abstract 207: The cBioPortal for Cancer Genomics

Cancer Res (2021) 81 (13_Supplement): 207.

https://doi.org/10.1158/1538-7445.AM2021-207

Published: 01 July 2021

View article titled, Abstract 207: The cBioPortal for Cancer Genomics

Journal Articles

Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis

Junjun Li, Tingting Liao, Hongya Liu, Hongliang Yuan, Taohui Ouyang, Jiajing Wang, Songshan Chai, Jinsong Li, Jingchao Chen, Xiang Li, Hongyang Zhao, Nanxiang Xiong

Cancer Res (2021) 81 (1): 114–128.

https://doi.org/10.1158/0008-5472.CAN-20-2270

Published: 04 January 2021

View article titled, Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis

Includes: Supplementary data

Journal Articles

Abstract PO-083: Utilizing spatial transcriptomics to elucidate tertiary lymphoid structure heterogeneity in human cancer

Dongyan Liu, Xiang Li, Rajesh Acharya, Ernest M. Meyer, Shelley Reynolds, Ayana Ruffin, Robert L. Ferris, Dario A.A. Vignali, Riyue Bao, Tullia C. Bruno

Cancer Res (2020) 80 (21_Supplement): PO-083.

https://doi.org/10.1158/1538-7445.TUMHET2020-PO-083

Published: 03 November 2020

View article titled, Abstract PO-083: Utilizing spatial transcriptomics to elucidate tertiary lymphoid structure heterogeneity in human cancer

Journal Articles

Abstract 3209: The cBioPortal for Cancer Genomics

Cancer Res (2020) 80 (16_Supplement): 3209.

https://doi.org/10.1158/1538-7445.AM2020-3209

Published: 15 August 2020

View article titled, Abstract 3209: The cBioPortal for Cancer Genomics

Journal Articles

Abstract 1443: Inhibiting HMG-CoA reductase suppresses non-small cell lung carcinogenesis

Qiushi Wang, Tianshun Zhang, Ruihua Bai, Keke Wang, Xiang Li, Kangdong Liu, Ting Wang, Xiaoyu Chang, Weiya Ma, Ann Bode, Qingxin Xia, Yongping Song, Zigang Dong

Cancer Res (2020) 80 (16_Supplement): 1443.

https://doi.org/10.1158/1538-7445.AM2020-1443

Published: 15 August 2020

View article titled, Abstract 1443: Inhibiting HMG-CoA reductase suppresses non-small cell lung carcinogenesis

NARROW

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

circFNDC3B Accelerates Vasculature Formation and Metastasis in Oral Squamous Cell Carcinoma

Abstract 5872: Spatial immunophenotypes contribute to predict survival of triple-negative breast cancer assessed as Miller-Payne grade 4 and N0 after neoadjuvant therapy

Abstract 6778: Spatial analysis of genomic signatures on colorectal cancer pathogenesis using the GeoMx^® Digital Spatial Profiler

Abstract 1997: 2C5 antibody modified dendrimer-based mixed micelles for the treatment of multidrug resistant cancers

Abstract 3725: ABI1 regulates STAT3 transcription through a DNA binding activity

Abstract 4256: cBioPortal for Cancer Genomics

Abstract 1995: 2C5-surface modified nanocarriers targeting neutrophil extracellular traps

Abstract 6578: reVUE: repository for variants with unexpected effects

SETDB1 Modulates Degradation of Phosphorylated RB and Anticancer Efficacy of CDK4/6 Inhibitors

Abstract 2364: ABI1 regulates transcriptional activity of STAT3

Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Abstract 1155: cBioPortal for cancer genomics

Abstract 5552: Novel set of OX40 targeted antibodies and VHHs include agonists and antagonists for future development

Abstract 6114: Prognostic value of the tumor-infiltrating lymphocytes in Miller-Payne grade 4 triple-negative breast cancer following neoadjuvant chemotherapy

Abstract 207: The cBioPortal for Cancer Genomics

Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis

Abstract PO-083: Utilizing spatial transcriptomics to elucidate tertiary lymphoid structure heterogeneity in human cancer

Abstract 3209: The cBioPortal for Cancer Genomics

Abstract 1443: Inhibiting HMG-CoA reductase suppresses non-small cell lung carcinogenesis

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