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Journal Articles

Abstract 3291: The human cancer DNA methylation marker atlas

Alexander Koch, Gerrit A. Meijer, James G. Herman, Wim Van Criekinge, Manon van Engeland

Cancer Res (2018) 78 (13_Supplement): 3291.

https://doi.org/10.1158/1538-7445.AM2018-3291

Published: 01 July 2018

View article titled, Abstract 3291: The human cancer DNA methylation marker atlas

Journal Articles

Abstract B19: Genome-wide integrated epigenomics identifies FZD-X as novel modulator for platinum sensitivity in high-grade serous ovarian cancer

Tushar Tomar, Nicolette G. Alkema, Gert Jan Meersma, Tim De Meyer, Wim van Criekinge, Harry G. Klip, Ate GJ van der Zee, Steven de Jong, G. Bea A. Wisman

Cancer Res (2016) 76 (2_Supplement): B19.

https://doi.org/10.1158/1538-7445.CHROMEPI15-B19

Published: 14 January 2016

View article titled, Abstract B19: Genome-wide integrated epigenomics identifies FZD-X as novel modulator for platinum sensitivity in high-grade serous ovarian cancer

Journal Articles

Abstract 5608: Molecular characterization of matched ovarian ascites and tumors suggests multiple mechanisms for a homologous recombination defective phenotype

Richard J. Edmondson, Asima Mukhopadhyay, Leander Van Neste, Wim Van Criekinge, Nicola Curtin

Cancer Res (2014) 74 (19_Supplement): 5608.

https://doi.org/10.1158/1538-7445.AM2014-5608

Published: 01 October 2014

View article titled, Abstract 5608: Molecular characterization of matched ovarian ascites and tumors suggests multiple mechanisms for a homologous recombination defective phenotype

Journal Articles

The CpG Island Methylator Phenotype: What's in a Name?

Laura A.E. Hughes, Veerle Melotte, Joachim de Schrijver, Michiel de Maat, Vincent T.H.B.M. Smit, Judith V.M.G. Bovée, Pim J. French, Piet A. van den Brandt, Leo J. Schouten, Tim de Meyer, Wim van Criekinge, Nita Ahuja, James G. Herman, Matty P. Weijenberg, Manon van Engeland

Cancer Res (2013) 73 (19): 5858–5868.

https://doi.org/10.1158/0008-5472.CAN-12-4306

Published: 01 October 2013

View article titled, The CpG Island Methylator Phenotype: What's in a Name?

Journal Articles

Abstract 2380: Reduced CD44 and OTP gene expression are strong indicators of poor prognosis in pulmonary carcinoids.

Dorian RA Swarts, Mieke Henfling, Leander van Neste, Robert J. van Suylen, Anne-Marie Dingemans, Winand NM Dinjens, Annick Haesevoets, Martina Rudelius, Erik Thunnissen, Marco Volante, Wim van Criekinge, Manon van Engeland, Frans CS Ramaekers, Ernst-Jan M. Speel

Cancer Res (2013) 73 (8_Supplement): 2380.

https://doi.org/10.1158/1538-7445.AM2013-2380

Published: 15 April 2013

View article titled, Abstract 2380: Reduced CD44 and OTP gene expression are strong indicators of poor prognosis in pulmonary carcinoids.

Journal Articles

Abstract 1155: Promoter CpG island hypermethylation of Decoy Receptor 1 (DCR1) is associated with poor response to irinotecan in colorectal cancer.

Linda JW Bosch, Geert Trooskens, Petur Snaebjornsson, Josien C. Haan, Lorraine Pelosof, Miriam Koopman, Jolien Tol, Joost Louwagie, Luc Dehaspe, Bauke Ylstra, Henk Verheul, Manon van Engeland, Iris D. Nagtegaal, James G. Herman, Cornelis JA Punt, Wim van Criekinge, Beatriz Carvalho, Gerrit A. Meijer

Cancer Res (2013) 73 (8_Supplement): 1155.

https://doi.org/10.1158/1538-7445.AM2013-1155

Published: 15 April 2013

View article titled, Abstract 1155: Promoter CpG island hypermethylation of Decoy Receptor 1 (DCR1) is associated with poor response to irinotecan in colorectal cancer.

Journal Articles

Abstract 3458: An epigenomic next-generation sequencing approach to identify predictive markers for PARP inhibitor response in breast cancer cells.

Tim De Meyer, Geert Trooskens, Mascha K. Wibbe, Sebastian B. Bartmann, Manon van Engeland, Wim Van Criekinge, Vivianne C. Tjan-Heijnen, Ruth Knüchel, Jürgen Veeck

Cancer Res (2013) 73 (8_Supplement): 3458.

https://doi.org/10.1158/1538-7445.AM2013-3458

Published: 15 April 2013

View article titled, Abstract 3458: An epigenomic next-generation sequencing approach to identify predictive markers for PARP inhibitor response in breast cancer cells.

Journal Articles

Abstract 646: Identification of novel epigenetic biomarkers for platinum-based chemotherapy resistance in high grade serous ovarian cancer.

Tushar Tomar, Nicolette G. Alkema, Tim De Meyer, Wim van Criekinge, Harry G. Klip, Gert Jan Meersma, Ate GJ van der Zee, Steven de Jong, G. Bea A. Wisman

Cancer Res (2013) 73 (8_Supplement): 646.

https://doi.org/10.1158/1538-7445.AM2013-646

Published: 15 April 2013

View article titled, Abstract 646: Identification of novel epigenetic biomarkers for platinum-based chemotherapy resistance in high grade serous ovarian cancer.

Journal Articles

Abstract 645: DNA methylation marker discovery for the prediction of nodal metastases in head and neck cancer.

Martijn Clausen, Lieuwe J. Melchers, Leonie Bruine de Bruin, Mirjam F. Mastik, Lorian Slagter-Menkema, Harry J. Groen, Bert van der Vegt, Bernard F. Van der Laan, Tim De Meyer, Wim Van Criekinge, G Bea Wisman, Jan L. Roodenburg, Ed Schuuring

Cancer Res (2013) 73 (8_Supplement): 645.

https://doi.org/10.1158/1538-7445.AM2013-645

Published: 15 April 2013

View article titled, Abstract 645: DNA methylation marker discovery for the prediction of nodal metastases in head and neck cancer.

Journal Articles

Abstract 4248: Methylation specific digital karyotyping of human papillomavirus type 16 E6E7 expressing keratinocytes identifies novel methylation targets in cervical carcinogenesis.

Renske D M Steenbergen, Maté Ongenaert, Suzanne Snellenberg, Chris JLM Meijer, Kornelia Polyak, Noga Bloushtain-Qimron, Peter JF Snijders, Wim van Criekinge

Cancer Res (2013) 73 (8_Supplement): 4248.

https://doi.org/10.1158/1538-7445.AM2013-4248

Published: 15 April 2013

View article titled, Abstract 4248: Methylation specific digital karyotyping of human papillomavirus type 16 E6E7 expressing keratinocytes identifies novel methylation targets in cervical carcinogenesis.

Journal Articles

Abstract 5574: ZNF516 and FKBP6 promoter hypermethylation as a potential companion diagnostic panel for HPV-positive and inconclusive-Pap women

Priscilla Brebi, Maartje Noordhuis, Carmen Ili, Pamela Leal, Patricia García, Jimena Pérez, Ethan Soudry, Sergio Muñoz, Leander Van Neste, Wim Van Criekinge, David Sidransky, Juan Roa, Rafael E. Guerrero-Preston

Cancer Res (2012) 72 (8_Supplement): 5574.

https://doi.org/10.1158/1538-7445.AM2012-5574

Published: 15 April 2012

View article titled, Abstract 5574: ZNF516 and FKBP6 promoter hypermethylation as a potential companion diagnostic panel for HPV-positive and inconclusive-Pap women

Journal Articles

Abstract 3910: An integrated genomic and epigenomic approach for identification of novel disease-related regions and genes in bladder cancer progression

Mariana Brait, Paola Parrella, Paul Cairns, Raffaela Barbano, Prodipto Pal, Leonel Maldonado, Maté Ongenaert, Wim Van Criekinge, David Sidransky, Mohammad O. Hoque

Cancer Res (2011) 71 (8_Supplement): 3910.

https://doi.org/10.1158/1538-7445.AM2011-3910

Published: 15 April 2011

View article titled, Abstract 3910: An integrated genomic and epigenomic approach for identification of novel disease-related regions and genes in bladder cancer progression

Journal Articles

Cancer-Related Epigenome Changes Associated with Reprogramming to Induced Pluripotent Stem Cells

Cancer Res (2010) 70 (19): 7662–7673.

https://doi.org/10.1158/0008-5472.CAN-10-1361

Published: 29 September 2010

View article titled, Cancer-Related Epigenome Changes Associated with Reprogramming to Induced Pluripotent Stem Cells

Includes: Supplementary data

Journal Articles

Abstract 4891: GULP1, a potential tumor suppressor gene in ovarian tumors and its utility as a biomarker

Leonel Maldonado, Mariana Brait, Shahnaz Begum, Aditi Chatterjee, Myriam Loyo, Alvaro Barbosa, M Luana Poeta, Vito M. Fazio, Angioli Roberto, Elisabetta Tarquini, Wim Van Criekinge, Mate Ongenaert, G Bea A Wisman, Pauline de Graeff, Ate Van der Zee, David Sidransky, Mohammad O. Hoque

Cancer Res (2010) 70 (8_Supplement): 4891.

https://doi.org/10.1158/1538-7445.AM10-4891

Published: 15 April 2010

View article titled, Abstract 4891: GULP1, a potential tumor suppressor gene in ovarian tumors and its utility as a biomarker

Journal Articles

Abstract 4917: A four-gene methylation marker panel as triage test in hr-HPV positive patients

Jasper JH Eijsink, Agnes Lendvai, Valerie Deregowski, Harry G. Klip, Gonda Verpooten, Luc Dehaspe, Geertruida H. de Bock, Harry Hollema, Wim van Criekinge, Ed Schuuring, Ate GJ van der Zee, Bea Wisman

Cancer Res (2010) 70 (8_Supplement): 4917.

https://doi.org/10.1158/1538-7445.AM10-4917

Published: 15 April 2010

View article titled, Abstract 4917: A four-gene methylation marker panel as triage test in hr-HPV positive patients

Journal Articles

Abstract #3361: Ovarian cancer methylome and its potential as biomarker

Mariana Brait, Leonel Maldonado, Shahnaz Begum, Myriam Loyo, Maria Luana Poeta, Vito Fazio, Maté Ongenaert, Wim Van Criekinge, David Sidransky, Mohammad Hoque

Cancer Res (2009) 69 (9_Supplement): 3361.

Published: 01 May 2009

View article titled, Abstract #3361: Ovarian cancer methylome and its potential as biomarker

Journal Articles

Defining a Chromatin Pattern that Characterizes DNA-Hypermethylated Genes in Colon Cancer Cells

Kelly M. McGarvey, Leander Van Neste, Leslie Cope, Joyce E. Ohm, James G. Herman, Wim Van Criekinge, Kornel E. Schuebel, Stephen B. Baylin

Cancer Res (2008) 68 (14): 5753–5759.

https://doi.org/10.1158/0008-5472.CAN-08-0700

Published: 15 July 2008

View article titled, Defining a Chromatin Pattern that Characterizes DNA-Hypermethylated Genes in Colon Cancer Cells

Includes: Supplementary data

Journal Articles

Pharmacologic unmasking of epigenetically silenced genes in breast cancer

Kimberly Ostrow, Hannah Park, Mohammad Hoque, Myoung Kim, Junwei Liu, William Westra, Wim Van Criekinge, David Sidransky

Cancer Res (2008) 68 (9_Supplement): 37.

Published: 01 May 2008

View article titled, Pharmacologic unmasking of epigenetically silenced genes in breast cancer

Journal Articles

Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Cancer Res (2008) 68 (8): 2661–2670.

https://doi.org/10.1158/0008-5472.CAN-07-5913

Published: 15 April 2008

View article titled, Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Includes: Supplementary data

Journal Articles

Identification of Epigenetically Silenced Genes in Tumor Endothelial Cells

Debby M.E.I. Hellebrekers, Veerle Melotte, Emmanuelle Viré, Elise Langenkamp, Grietje Molema, François Fuks, James G. Herman, Wim Van Criekinge, Arjan W. Griffioen, Manon van Engeland

Cancer Res (2007) 67 (9): 4138–4148.

https://doi.org/10.1158/0008-5472.CAN-06-3032

Published: 04 May 2007

View article titled, Identification of Epigenetically Silenced Genes in Tumor Endothelial Cells

Includes: Supplementary data

NARROW

Abstract 3291: The human cancer DNA methylation marker atlas

Abstract B19: Genome-wide integrated epigenomics identifies FZD-X as novel modulator for platinum sensitivity in high-grade serous ovarian cancer

Abstract 5608: Molecular characterization of matched ovarian ascites and tumors suggests multiple mechanisms for a homologous recombination defective phenotype

The CpG Island Methylator Phenotype: What's in a Name?

Abstract 2380: Reduced CD44 and OTP gene expression are strong indicators of poor prognosis in pulmonary carcinoids.

Abstract 1155: Promoter CpG island hypermethylation of Decoy Receptor 1 (DCR1) is associated with poor response to irinotecan in colorectal cancer.

Abstract 3458: An epigenomic next-generation sequencing approach to identify predictive markers for PARP inhibitor response in breast cancer cells.

Abstract 646: Identification of novel epigenetic biomarkers for platinum-based chemotherapy resistance in high grade serous ovarian cancer.

Abstract 645: DNA methylation marker discovery for the prediction of nodal metastases in head and neck cancer.

Abstract 4248: Methylation specific digital karyotyping of human papillomavirus type 16 E6E7 expressing keratinocytes identifies novel methylation targets in cervical carcinogenesis.

Abstract 5574: ZNF516 and FKBP6 promoter hypermethylation as a potential companion diagnostic panel for HPV-positive and inconclusive-Pap women

Abstract 3910: An integrated genomic and epigenomic approach for identification of novel disease-related regions and genes in bladder cancer progression

Cancer-Related Epigenome Changes Associated with Reprogramming to Induced Pluripotent Stem Cells

Abstract 4891: GULP1, a potential tumor suppressor gene in ovarian tumors and its utility as a biomarker

Abstract 4917: A four-gene methylation marker panel as triage test in hr-HPV positive patients

Abstract #3361: Ovarian cancer methylome and its potential as biomarker

Defining a Chromatin Pattern that Characterizes DNA-Hypermethylated Genes in Colon Cancer Cells

Pharmacologic unmasking of epigenetically silenced genes in breast cancer

Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Identification of Epigenetically Silenced Genes in Tumor Endothelial Cells

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