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Journal Articles

Abstract CT285: KEYNOTE-689: A phase 3 study of neoadjuvant and adjuvant pembrolizumab plus standard of care (SOC) in locally advanced (LA) head and neck squamous cell carcinoma (HNSCC)

Nancy Y. Lee, Ravindra Uppaluri, William Westra, Ezra E. Cohen, Robert I. Haddad, Stephane Temam, Christophe Le Tourneau, Rebecca Chernock, Sufia Safina, Arkadiy Klochikhin, Amichay Meirovitz, Irene Brana, Joy Yang Ge, Ramona F. Swaby, Cecilia Pinheiro, Douglas Adkins

Cancer Res (2020) 80 (16_Supplement): CT285.

https://doi.org/10.1158/1538-7445.AM2020-CT285

Published: 15 August 2020

View article titled, Abstract CT285: KEYNOTE-689: A phase 3 study of neoadjuvant and adjuvant pembrolizumab plus standard of care (SOC) in locally advanced (LA) head and neck squamous cell carcinoma (HNSCC)

Journal Articles

Abstract 570: High-resolution microbiome profiling of 16SrRNA sequencing data, Microbiome Arrays, and expression arrays identifies differential bacterial communities in head and neck cancer patients treated with surgery, chemo-radiation, and PD-1 checkpoint blockade therapy

Rafael E. Guerrero-Preston, Kelvin Navarro, Filipa Godoy-Vitorino, James White, Anne Jedlicka, Gustavo Rivera-Alvarez, Barbara Mora-Lagos, Winston Timp, William Westra, Wayne Koch, Luigi Marchionni, Young Kim, David Sidransky

Cancer Res (2018) 78 (13_Supplement): 570.

https://doi.org/10.1158/1538-7445.AM2018-570

Published: 01 July 2018

View article titled, Abstract 570: High-resolution microbiome profiling of 16SrRNA sequencing data, Microbiome Arrays, and expression arrays identifies differential bacterial communities in head and neck cancer patients treated with surgery, chemo-radiation, and PD-1 checkpoint blockade therapy

Journal Articles

Abstract 4474: Functional characterization of alternatively spliced GSN in head and neck cancer

Dylan Z. Kelley, Emily L. Flam, Theresa Guo, Craig Bohrson, Michael Considine, Ludmila V. Danilova, Justin A. Bishop, Chi Zhang, Wayne M. Koch, David Sidransky, William Westra, Sarah Wheelan, Liliana Florea, Elana J. Fertig, Joseph A. Califano, Daria A. Gaykalova

Cancer Res (2017) 77 (13_Supplement): 4474.

https://doi.org/10.1158/1538-7445.AM2017-4474

Published: 01 July 2017

View article titled, Abstract 4474: Functional characterization of alternatively spliced <em>GSN</em> in head and neck cancer

Journal Articles

Abstract 1018: High-resolution microbiome profiling and genome wide arrays uncover bacteria driven alterations of oncogenic and immune pathways in head and neck cancer patients treated with surgery, chemo-radiation and PD-1 checkpoint blockade therapy

Cancer Res (2017) 77 (13_Supplement): 1018.

https://doi.org/10.1158/1538-7445.AM2017-1018

Published: 01 July 2017

View article titled, Abstract 1018: High-resolution microbiome profiling and genome wide arrays uncover bacteria driven alterations of oncogenic and immune pathways in head and neck cancer patients treated with surgery, chemo-radiation and PD-1 checkpoint blockade therapy

Journal Articles

Abstract 2880: The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma

Cancer Res (2016) 76 (14_Supplement): 2880.

https://doi.org/10.1158/1538-7445.AM2016-2880

Published: 15 July 2016

View article titled, Abstract 2880: The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma

Journal Articles

Abstract B1-62: Bumphunting analysis identifies PAX5 promoter methylation and p53 somatic mutations in genomic instability pathways linked to very poor survival in head and neck cancer

Christina Michailidi, Maartje Noordhuis, Tal Hadar, Luigi Marchioni, Elana Fertig, Nishant Agrawal, William Westra, Wayne Koch, Joseph Califano, Victor Velculescu, David Sidransky, Rafael Guerrero-Preston

Cancer Res (2015) 75 (22_Supplement_2): B1-62.

https://doi.org/10.1158/1538-7445.COMPSYSBIO-B1-62

Published: 15 November 2015

View article titled, Abstract B1-62: Bumphunting analysis identifies PAX5 promoter methylation and p53 somatic mutations in genomic instability pathways linked to very poor survival in head and neck cancer

Journal Articles

Abstract 1533: 16S rRNA saliva analysis unveils differences in the head and neck squamous cell carcinoma microbiome before and after surgical resection

Rafael E. Guerrero-Preston, Filipa Godoy-Vitorino, Herminio González, Christina Michailidi, Anne Jedlicka, Amanda Dziedzic, Rajagowthamee Thangavel, Tal Hadar, Maartje G. Noordhuis, William Westra, Wayne Koch, David Sidransky

Cancer Res (2015) 75 (15_Supplement): 1533.

https://doi.org/10.1158/1538-7445.AM2015-1533

Published: 01 August 2015

View article titled, Abstract 1533: 16S rRNA saliva analysis unveils differences in the head and neck squamous cell carcinoma microbiome before and after surgical resection

Journal Articles

Abstract 2482: Key tumor suppressor genes inactivated by promoter methylation and somatic mutations in head and neck cancer

Rafael Guerrero-Preston, Christina Michailidi, Luigi Marchionni, Curtis Pickering, Mitchell Frederick, Jeffrey Myers, Srinivasan Yegnasubramanian, Tal Hadar, Maartje Noordhuis, Elana Fertig, Nishant Agrawal, William Westra, Wayne Koch, Joseph Califano, Victor Velculescu, David Sidransky

Cancer Res (2014) 74 (19_Supplement): 2482.

https://doi.org/10.1158/1538-7445.AM2014-2482

Published: 01 October 2014

View article titled, Abstract 2482: Key tumor suppressor genes inactivated by promoter methylation and somatic mutations in head and neck cancer

Journal Articles

Abstract 1505: Targeted sequencing for the assessment of intratumor heterogeneity

Eugene G. Izumchenko, Xiaofei Chang, Mariana Brait, William Westra, David Sidransky

Cancer Res (2014) 74 (19_Supplement): 1505.

https://doi.org/10.1158/1538-7445.AM2014-1505

Published: 01 October 2014

View article titled, Abstract 1505: Targeted sequencing for the assessment of intratumor heterogeneity

Journal Articles

Abstract 870: 16S rRNA saliva analysis unveils microbiome biomonitors linked to human papilloma virus and oropharyngeal squamous cell carcinoma

Rafael E. Guerrero-Preston, Christina Michailidi, Anne Jedlicka, Rajagowthamee Thangavel, Tal Hadar, Maartje G. Nordhuis, William Westra, Wayne Koch, Joseph Califano, David Sidransky

Cancer Res (2014) 74 (19_Supplement): 870.

https://doi.org/10.1158/1538-7445.AM2014-870

Published: 01 October 2014

View article titled, Abstract 870: 16S rRNA saliva analysis unveils microbiome biomonitors linked to human papilloma virus and oropharyngeal squamous cell carcinoma

Journal Articles

Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.

Daria A. Gaykalova, Rajita Vatapalli, Yingying Wei, Hao Wang, Patrick Hennessey, Ryan Li, Chi Zhang, Marietta Tan, Zubair Khan, William Westra, Tanbir Khan, David Zaboli, Michael F. Ochs, Joseph A. Califano

Cancer Res (2013) 73 (8_Supplement): 3554.

https://doi.org/10.1158/1538-7445.AM2013-3554

Published: 15 April 2013

View article titled, Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.

Journal Articles

Abstract 4097: Integrative analysis of epigenetic and transcriptional alterations in head and neck squamous cell carcinomas

Daria A. Gaykalova, Rajita Vatapalli, Yingying Wei, Patrick Hennessey, Zubair Khan, William Westra, Tanbir Khan, David Zaboli, David Sidransky, Michael Ochs, Joseph A. Califano

Cancer Res (2012) 72 (8_Supplement): 4097.

https://doi.org/10.1158/1538-7445.AM2012-4097

Published: 15 April 2012

View article titled, Abstract 4097: Integrative analysis of epigenetic and transcriptional alterations in head and neck squamous cell carcinomas

Journal Articles

Abstract #1406: Identification of clonal genetic alteration in bronchoscopically abnormal respiratory epithelium of follow-up lung cancer patients

Santanu Dasgupta, Rex Yung, Mohammad Hoque, Shahnaz Begum, William Westra, Mariana Brait, Chunfa Jie, Conover Talbot, David Sidransky

Cancer Res (2009) 69 (9_Supplement): 1406.

Published: 01 May 2009

View article titled, Abstract #1406: Identification of clonal genetic alteration in bronchoscopically abnormal respiratory epithelium of follow-up lung cancer patients

Journal Articles

Abstract #1863: Quantitative detection of Merkel Cell Virus in human tissues yields clues to its mode of transmission

Myriam Loyo, Rafael Guerrero-Preston, Mariana Brait, Alice Chuang, Myoung Kim, Nanette Liégeois, Wayne Koch, Joseph Califano, William Westra, David Sidranksy

Cancer Res (2009) 69 (9_Supplement): 1863.

Published: 01 May 2009

View article titled, Abstract #1863: Quantitative detection of Merkel Cell Virus in human tissues yields clues to its mode of transmission

Journal Articles

Abstract #5185: Epigenome of human papillomavirus 16 in head and neck cancers

Il-Seok Park, Myriam Loyo, William Westra, Gang-Ming Zou, John Saunders, David Sidransky, Sara Pai

Cancer Res (2009) 69 (9_Supplement): 5185.

Published: 01 May 2009

View article titled, Abstract #5185: Epigenome of human papillomavirus 16 in head and neck cancers

Journal Articles

Pharmacologic unmasking of epigenetically silenced genes in breast cancer

Kimberly Ostrow, Hannah Park, Mohammad Hoque, Myoung Kim, Junwei Liu, William Westra, Wim Van Criekinge, David Sidransky

Cancer Res (2008) 68 (9_Supplement): 37.

Published: 01 May 2008

View article titled, Pharmacologic unmasking of epigenetically silenced genes in breast cancer

Journal Articles

AIM1 Promoter hypermethylation as an independent prognostic factor for relapse in patients with prostate cancer following radical prostatectomy

Shahnaz Begum, Eli Rosenbaum, Mariana Brait, Marianna Zahurak, Kimberly Ostrow, Santanu Dasgupta, David Sidransky, William Westra, Mohammad Hoque

Cancer Res (2008) 68 (9_Supplement): 2643.

Published: 01 May 2008

View article titled, AIM1 Promoter hypermethylation as an independent prognostic factor for relapse in patients with prostate cancer following radical prostatectomy

Journal Articles

Tracking clonal tumor evolution through mitochondrial DNA mutation in resected lung cancer patients

Santanu Dasgupta, Rex Yung, William Westra, David Rini, Johann Brandes, David Sidransky

Cancer Res (2008) 68 (9_Supplement): 1801.

Published: 01 May 2008

View article titled, Tracking clonal tumor evolution through mitochondrial DNA mutation in resected lung cancer patients

Journal Articles

Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Cancer Res (2008) 68 (8): 2661–2670.

https://doi.org/10.1158/0008-5472.CAN-07-5913

Published: 15 April 2008

View article titled, Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Includes: Supplementary data

Journal Articles

Genome-wide promoter analysis uncovers portions of the cancer “Methylome” in primary tumors and cell lines

Mohammad Hoque, Myong kim, Kimberly Ostrow, Junwei Liu, G. Bea A Wisman, Carmen Jeronimo, Henerique Rui, Straub Josef, Hannah Lui, Luana Poeta, Shahnaz Begum, Eli Rosenbaum, Keshi Yamashita, Joseph Califano, William Westra, Ate G.J Van der Zee, Wim Criekinge, David Sidransky

Cancer Res (2007) 67 (9_Supplement): 237.

Published: 01 May 2007

View article titled, Genome-wide promoter analysis uncovers portions of the cancer “Methylome” in primary tumors and cell lines

NARROW

Abstract CT285: KEYNOTE-689: A phase 3 study of neoadjuvant and adjuvant pembrolizumab plus standard of care (SOC) in locally advanced (LA) head and neck squamous cell carcinoma (HNSCC)

Abstract 570: High-resolution microbiome profiling of 16SrRNA sequencing data, Microbiome Arrays, and expression arrays identifies differential bacterial communities in head and neck cancer patients treated with surgery, chemo-radiation, and PD-1 checkpoint blockade therapy

Abstract 4474: Functional characterization of alternatively spliced GSN in head and neck cancer

Abstract 1018: High-resolution microbiome profiling and genome wide arrays uncover bacteria driven alterations of oncogenic and immune pathways in head and neck cancer patients treated with surgery, chemo-radiation and PD-1 checkpoint blockade therapy

Abstract 2880: The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma

Abstract B1-62: Bumphunting analysis identifies PAX5 promoter methylation and p53 somatic mutations in genomic instability pathways linked to very poor survival in head and neck cancer

Abstract 1533: 16S rRNA saliva analysis unveils differences in the head and neck squamous cell carcinoma microbiome before and after surgical resection

Abstract 2482: Key tumor suppressor genes inactivated by promoter methylation and somatic mutations in head and neck cancer

Abstract 1505: Targeted sequencing for the assessment of intratumor heterogeneity

Abstract 870: 16S rRNA saliva analysis unveils microbiome biomonitors linked to human papilloma virus and oropharyngeal squamous cell carcinoma

Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.

Abstract 4097: Integrative analysis of epigenetic and transcriptional alterations in head and neck squamous cell carcinomas

Abstract #1406: Identification of clonal genetic alteration in bronchoscopically abnormal respiratory epithelium of follow-up lung cancer patients

Abstract #1863: Quantitative detection of Merkel Cell Virus in human tissues yields clues to its mode of transmission

Abstract #5185: Epigenome of human papillomavirus 16 in head and neck cancers

Pharmacologic unmasking of epigenetically silenced genes in breast cancer

AIM1 Promoter hypermethylation as an independent prognostic factor for relapse in patients with prostate cancer following radical prostatectomy

Tracking clonal tumor evolution through mitochondrial DNA mutation in resected lung cancer patients

Genome-Wide Promoter Analysis Uncovers Portions of the Cancer Methylome

Genome-wide promoter analysis uncovers portions of the cancer “Methylome” in primary tumors and cell lines

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