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Journal Articles

Abstract 1191: PD-L1 expression and the tumor immune microenvironment in NUT carcinoma

Lisa M. Rooper, Nyall R. London, Janis M. Taube, William H. Westra, Justin A. Bishop, Hyunseok Kang

Cancer Res (2019) 79 (13_Supplement): 1191.

https://doi.org/10.1158/1538-7445.AM2019-1191

Published: 01 July 2019

View article titled, Abstract 1191: PD-L1 expression and the tumor immune microenvironment in NUT carcinoma

Journal Articles

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Cancer Res (2017) 77 (23): 6538–6550.

https://doi.org/10.1158/0008-5472.CAN-17-0833

Published: 30 November 2017

View article titled, Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Includes: Supplementary data

Journal Articles

PD-1 Expression in Head and Neck Squamous Cell Carcinomas Derives Primarily from Functionally Anergic CD4⁺ TILs in the Presence of PD-L1⁺ TAMs

Austin K. Mattox, Jina Lee, William H. Westra, Robert H. Pierce, Ronald Ghossein, William C. Faquin, Thomas J. Diefenbach, Luc G. Morris, Derrick T. Lin, Lori J. Wirth, Armida Lefranc-Torres, Eiichi Ishida, Patrick D. Chakravarty, Lauren Johnson, Yang C. Zeng, Huabiao Chen, Mark C. Poznansky, Neil M. Iyengar, Sara I. Pai

Cancer Res (2017) 77 (22): 6365–6374.

https://doi.org/10.1158/0008-5472.CAN-16-3453

Published: 14 November 2017

View article titled, PD-1 Expression in Head and Neck Squamous Cell Carcinomas Derives Primarily from Functionally Anergic CD4+ TILs in the Presence of PD-L1+ TAMs

Includes: Supplementary data

Journal Articles

Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples

Dylan Z. Kelley, Emily L. Flam, Hildegard A. Wulf, Theresa Guo, Evgeny Izumchenko, Dzov A. Singman, Ludmila V. Danilova, Elena D. Stavrovskaya, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova

Cancer Res (2017) 77 (13_Supplement): 2424.

https://doi.org/10.1158/1538-7445.AM2017-2424

Published: 01 July 2017

View article titled, Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples

Journal Articles

Abstract 4667: mtDNA sequencing in HNSCC as a measurer of intratumoral heterogeneity and lymph node metastasis

Adrian D. Schubert, Evgeny Izumchenko, William H. Westra, Aditi Chatterjee, Wayne M. Koch, Mohammad O. Hoque, David Sidransky

Cancer Res (2017) 77 (13_Supplement): 4667.

https://doi.org/10.1158/1538-7445.AM2017-4667

Published: 01 July 2017

View article titled, Abstract 4667: mtDNA sequencing in HNSCC as a measurer of intratumoral heterogeneity and lymph node metastasis

Journal Articles

Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma

Theresa Guo, Daria Gaykalova, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Elana Fertig, Joseph A. Califano

Cancer Res (2015) 75 (15_Supplement): 4807.

https://doi.org/10.1158/1538-7445.AM2015-4807

Published: 01 August 2015

View article titled, Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma

Journal Articles

Abstract 4844: High throughput detection of PRKD1 mutations in salivary gland tumors using in situ mutation detection in tissue microarrays

Piotr T. Wysocki, William H. Westra, Shahnaz Begum, David Sidransky, Mariana Brait

Cancer Res (2015) 75 (15_Supplement): 4844.

https://doi.org/10.1158/1538-7445.AM2015-4844

Published: 01 August 2015

View article titled, Abstract 4844: High throughput detection of PRKD1 mutations in salivary gland tumors using in situ mutation detection in tissue microarrays

Journal Articles

Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC

Daria A. Gaykalova, Veronika Zizkova, Ilse Tiscareno, Yingying Wei, Rajita Vatapalli, Patrick T. Hennessey, Julie Ahn, Ludmila V. Danilova, Zubair Khan, Justin A. Bishop, Wayne M. Koch, William H. Westra, Michael F. Ochs, Joseph A. Califano

Cancer Res (2015) 75 (15_Supplement): 815.

https://doi.org/10.1158/1538-7445.AM2015-815

Published: 01 August 2015

View article titled, Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC

Journal Articles

Abstract 5231: Prognostic significance of miR-23b and miR-31 expression in non-small-cell lung cancer

Begum Shahnaz, Masamichi Hayashi, Takenori Ogawa, Mariana Brait, William H. Westra, Mohammad O. Hoque, David Sidransky

Cancer Res (2014) 74 (19_Supplement): 5231.

https://doi.org/10.1158/1538-7445.AM2014-5231

Published: 01 October 2014

View article titled, Abstract 5231: Prognostic significance of miR-23b and miR-31 expression in non-small-cell lung cancer

Journal Articles

Activation of the NOTCH Pathway in Head and Neck Cancer

Cancer Res (2014) 74 (4): 1091–1104.

https://doi.org/10.1158/0008-5472.CAN-13-1259

Published: 16 February 2014

View article titled, Activation of the NOTCH Pathway in Head and Neck Cancer

Includes: Supplementary data

Journal Articles

Evidence for a Role of the PD-1:PD-L1 Pathway in Immune Resistance of HPV-Associated Head and Neck Squamous Cell Carcinoma

Sofia Lyford-Pike, Shiwen Peng, Geoffrey D. Young, Janis M. Taube, William H. Westra, Belinda Akpeng, Tullia C. Bruno, Jeremy D. Richmon, Hao Wang, Justin A. Bishop, Lieping Chen, Charles G. Drake, Suzanne L. Topalian, Drew M. Pardoll, Sara I. Pai

Cancer Res (2013) 73 (6): 1733–1741.

https://doi.org/10.1158/0008-5472.CAN-12-2384

Published: 14 March 2013

View article titled, Evidence for a Role of the PD-1:PD-L1 Pathway in Immune Resistance of HPV-Associated Head and Neck Squamous Cell Carcinoma

Includes: Supplementary data

Journal Articles

Abstract 4035: Inactivation of the putative tumor suppressor gene AGTR1 by promoter hypermethylation in primary human cancer

Maartje G. Noordhuis, Mariana Brait, Leonel Maldonado, Kimberly Thomas, Lauren Sullenberger, Maté Ongenaert, William H. Westra, Pauline de Graeff, Shahnaz Begum, Ate G.J. van der Zee, G. Bea A. Wisman, David Sidransky, Mohammad O. Hoque

Cancer Res (2012) 72 (8_Supplement): 4035.

https://doi.org/10.1158/1538-7445.AM2012-4035

Published: 15 April 2012

View article titled, Abstract 4035: Inactivation of the putative tumor suppressor gene AGTR1 by promoter hypermethylation in primary human cancer

Journal Articles

Abstract 4041: Identification of GNG7 as an epigenetically silenced gene in head and neck cancer by gene expression profiling

Semra Demokan, Alice Y. Chuang, Xiaofei Chang, Tanbir Khan, Ian M. Smith, Kavita M. Pattani, Santanu Dasgupta, Shahnaz Begum, Zubair Khan, Nanette J. Liegeois, William H. Westra, David Sidransky, Wayne Koch, Joseph A. Califano

Cancer Res (2012) 72 (8_Supplement): 4041.

https://doi.org/10.1158/1538-7445.AM2012-4041

Published: 15 April 2012

View article titled, Abstract 4041: Identification of GNG7 as an epigenetically silenced gene in head and neck cancer by gene expression profiling

Journal Articles

Abstract 4841: Combining array-based approaches for the identification of candidate loci and related molecules in non-small lung cancer (NSCLC)

Shahnaz Begum, Prodipto Pal, Mariana Brait, William H. Westra, Mohammad O. Hoque, David Sidransky

Cancer Res (2011) 71 (8_Supplement): 4841.

https://doi.org/10.1158/1538-7445.AM2011-4841

Published: 15 April 2011

View article titled, Abstract 4841: Combining array-based approaches for the identification of candidate loci and related molecules in non-small lung cancer (NSCLC)

Journal Articles

Integration of Genotypic and Phenotypic Screening Reveals Molecular Mediators of Melanoma–Stromal Interaction

Megan J. Stine, C. Joanne Wang, Whei F. Moriarty, Byungwoo Ryu, Raymond Cheong, William H. Westra, Andre Levchenko, Rhoda M. Alani

Cancer Res (2011) 71 (7): 2433–2444.

https://doi.org/10.1158/0008-5472.CAN-10-1875

Published: 31 March 2011

View article titled, Integration of Genotypic and Phenotypic Screening Reveals Molecular Mediators of Melanoma–Stromal Interaction

Includes: Multimedia, Supplementary data

Journal Articles

Abstract 2159: Genomic characterization of benign and malignant thyroid tumors

Yan Liu, Leslie Cope, Wenyue Sun, Yongchun Wang, Nijaguna Prasad, Lauren Sangenario, Kristen Talbot, William H. Westra, Joseph A. Califano, Martha A. Zeiger, Christopher B. Umbricht

Cancer Res (2010) 70 (8_Supplement): 2159.

https://doi.org/10.1158/1538-7445.AM10-2159

Published: 15 April 2010

View article titled, Abstract 2159: Genomic characterization of benign and malignant thyroid tumors

Journal Articles

Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma

Srikumar Sengupta, Johan A. den Boon, I-How Chen, Michael A. Newton, David B. Dahl, Meng Chen, Yu-Juen Cheng, William H. Westra, Chien-Jen Chen, Allan Hildesheim, Bill Sugden, Paul Ahlquist

Cancer Res (2006) 66 (16): 7999–8006.

https://doi.org/10.1158/0008-5472.CAN-05-4399

Published: 15 August 2006

View article titled, Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma

Includes: Supplementary data

Journal Articles

Increased expression of repair genes TDP1 and XPF in human lung cancers

Chunyan Liu, Shaoyu Zhou, Shahnaz Begum, David Sidransky, William H. Westra, Joseph A. Califano

Cancer Res (2006) 66 (8_Supplement): 193.

Published: 15 April 2006

View article titled, Increased expression of repair genes TDP1 and XPF in human lung cancers

Journal Articles

Expression of human UNC5 in head and neck squamous cell carcinoma

Alice Ya-Chun Chuang, Chunyan Liu, Tony Chih-Yuan Chuang, Wayne M. Koch, William H. Westra, Joseph A. Califano

Cancer Res (2006) 66 (8_Supplement): 1051.

Published: 15 April 2006

View article titled, Expression of human UNC5 in head and neck squamous cell carcinoma

Journal Articles

Biomarkers of tobacco induced mitochondrial injury in head and neck cancer

Wei-Wen Jiang, Myoung Kim, Jun-Wei Liu, William H. Westra, Wayne Koch, David Sidransky, Joseph A. Califano

Cancer Res (2006) 66 (8_Supplement): 771.

Published: 15 April 2006

View article titled, Biomarkers of tobacco induced mitochondrial injury in head and neck cancer

NARROW

Abstract 1191: PD-L1 expression and the tumor immune microenvironment in NUT carcinoma

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

PD-1 Expression in Head and Neck Squamous Cell Carcinomas Derives Primarily from Functionally Anergic CD4⁺ TILs in the Presence of PD-L1⁺ TAMs

Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples

Abstract 4667: mtDNA sequencing in HNSCC as a measurer of intratumoral heterogeneity and lymph node metastasis

Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma

Abstract 4844: High throughput detection of PRKD1 mutations in salivary gland tumors using in situ mutation detection in tissue microarrays

Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC

Abstract 5231: Prognostic significance of miR-23b and miR-31 expression in non-small-cell lung cancer

Activation of the NOTCH Pathway in Head and Neck Cancer

Evidence for a Role of the PD-1:PD-L1 Pathway in Immune Resistance of HPV-Associated Head and Neck Squamous Cell Carcinoma

Abstract 4035: Inactivation of the putative tumor suppressor gene AGTR1 by promoter hypermethylation in primary human cancer

Abstract 4041: Identification of GNG7 as an epigenetically silenced gene in head and neck cancer by gene expression profiling

Abstract 4841: Combining array-based approaches for the identification of candidate loci and related molecules in non-small lung cancer (NSCLC)

Integration of Genotypic and Phenotypic Screening Reveals Molecular Mediators of Melanoma–Stromal Interaction

Abstract 2159: Genomic characterization of benign and malignant thyroid tumors

Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma

Increased expression of repair genes TDP1 and XPF in human lung cancers

Expression of human UNC5 in head and neck squamous cell carcinoma

Biomarkers of tobacco induced mitochondrial injury in head and neck cancer

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