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Vladimir Makarov
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Journal Articles

KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer

Hong Qiu, Vladimir Makarov, Jennifer K. Bolzenius, Angela Halstead, Yvonne Parker, Allen Wang, Gopakumar V. Iyer, Hannah Wise, Daniel Kim, Varna Thayaparan, Daniel J. Lindner, Georges-Pascal Haber, Angela H. Ting, Bing Ren, Timothy A. Chan, Vivek Arora, David B. Solit, Byron H. Lee
Journal: Cancer Research
Cancer Res (2023) 83 (6): 814–829.
https://doi.org/10.1158/0008-5472.CAN-22-1444
Published: 15 March 2023
View article titled, KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer
Open the PDF for KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract P1-04-04: A multiomic approach to the identification of immune signatures of anti-PD1/PDL1 therapy responders in metastatic triple negative breast cancer: new implications in the role of helper T-cell and B-cell interplay

Avia D. Wilkerson, Patricia A. Rayman, Paul G. Pavicic, Jr, Hana Husic, Vladimir Makarov, Ivan Juric, Timothy Chan, Alberto J. Montero, Marcela Diaz-Montero
Journal: Cancer Research
Cancer Res (2023) 83 (5_Supplement): P1-04-04.
https://doi.org/10.1158/1538-7445.SABCS22-P1-04-04
Published: 01 March 2023
View article titled, Abstract P1-04-04: A multiomic approach to the identification of immune signatures of anti-PD1/PDL1 therapy responders in metastatic triple negative breast cancer: new implications in the role of helper T-cell and B-cell interplay
Journal Articles

Abstract A019: Epigenetic regulation by H3K9 methylation enables resistance to anti-androgen therapy in prostate cancer

Ritika Tiwari, Mehdi Baratchian, Michael Berk, Jianneng Li, Amy Guerinot, Vladimir Makarov, Timothy A. Chan, Abhishek A. Chakraborty, Nima Sharifi
Journal: Cancer Research
Cancer Res (2022) 82 (23_Supplement_2): A019.
https://doi.org/10.1158/1538-7445.CancEpi22-A019
Published: 01 December 2022
View article titled, Abstract A019: Epigenetic regulation by H3K9 methylation enables resistance to anti-androgen therapy in prostate cancer
Journal Articles

Colorectal Cancer Develops Inherent Radiosensitivity That Can Be Predicted Using Patient-Derived Organoids

Kuo-Shun Hsu, Mohammad Adileh, Maria Laura Martin, Vladimir Makarov, Jiapeng Chen, Chao Wu, Sahra Bodo, Stefan Klingler, Charles-Etienne Gabriel Sauvé, Bryan C. Szeglin, J. Joshua Smith, Zvi Fuks, Nadeem Riaz, Timothy A. Chan, Makoto Nishimura, Philip B. Paty, Richard Kolesnick
Journal: Cancer Research
Cancer Res (2022) 82 (12): 2298–2312.
https://doi.org/10.1158/0008-5472.CAN-21-4128
Published: 15 June 2022
View article titled, Colorectal Cancer Develops Inherent Radiosensitivity That Can Be Predicted Using Patient-Derived Organoids
Open the PDF for Colorectal Cancer Develops Inherent Radiosensitivity That Can Be Predicted Using Patient-Derived Organoids in another window
Includes: Supplementary data
Journal Articles

Abstract 1484: Microbial sequencing using a single-pool target enrichment of multiple variable regions of the 16S rRNA gene, the nuclear ribosomal internal transcribed spacer (ITS) region, and antimicrobial resistance genes

Kayla Peck, Robert Stedtfeld, Jordan RoseFigura, Brett Reed, Drew McUsic, Jon Irish, Brett Etchebarne, Timothy Johnson, Laurie Kurihara, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 1484.
https://doi.org/10.1158/1538-7445.AM2019-1484
Published: 01 July 2019
View article titled, Abstract 1484: Microbial sequencing using a single-pool target enrichment of multiple variable regions of the 16S rRNA gene, the nuclear ribosomal internal transcribed spacer (ITS) region, and antimicrobial resistance genes
Journal Articles

Abstract 3542: Turbolase: A radically streamlined high throughput sample prep to sequencing workflow

Dustin Masser, Robert Stedtfeld, Justin Lenhart, Vladimir Makarov, Laurie Kurihara
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3542.
https://doi.org/10.1158/1538-7445.AM2019-3542
Published: 01 July 2019
View article titled, Abstract 3542: Turbolase: A radically streamlined high throughput sample prep to sequencing workflow
Journal Articles

Abstract 1430: Improved sample indexing for high fidelity demultiplexing to increase confidence in low frequency variant calling

Jonathan C. Irish, Jordan RoseFigura, Sukhinder K. Sandhu, Bita Carrion, Laurie Kurihara, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 1430.
https://doi.org/10.1158/1538-7445.AM2018-1430
Published: 01 July 2018
View article titled, Abstract 1430: Improved sample indexing for high fidelity demultiplexing to increase confidence in low frequency variant calling
Journal Articles

Abstract 2230: Low frequency variant detection in cell free DNA by applying molecular identifiers to targeted NGS

Ashley Wood, Sukhinder Sandhu, Mida Pezeshkian, Vanessa Kelchner, Jordan RoseFigura, Justin Lenhart, Laurie Kurihara, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2230.
https://doi.org/10.1158/1538-7445.AM2018-2230
Published: 01 July 2018
View article titled, Abstract 2230: Low frequency variant detection in cell free DNA by applying molecular identifiers to targeted NGS
Journal Articles

Abstract 4619: Integrated genomic analysis of Hurthle cell carcinoma reveals TMEM233/PRKAB1 fusion as a novel oncogenic driver

Yiyu Dong, Ian Ganly, Vladimir Makarov, Fengshen Kuo, Shyamprasad Deraje, Ed Reznik, Venkatraman Seshan, Gouri Nanjangud, Luc Morris, Nadeem Riaz, Eric Sherman, Ronald Ghossein, James Fagin, Timothy Chan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4619.
https://doi.org/10.1158/1538-7445.AM2018-4619
Published: 01 July 2018
View article titled, Abstract 4619: Integrated genomic analysis of Hurthle cell carcinoma reveals TMEM233/PRKAB1 fusion as a novel oncogenic driver
Journal Articles

Abstract 2988: Immunogenomic analyses of tumor cells and microenvironment in patients with advanced melanoma before and after treatment with nivolumab

Timothy A. Chan, Nadeem Riaz, Jonathan J. Havel, Vladimir Makarov, Alexis Desrichard, Jennifer S. Sims, F. Stephen Hodi, Salvador Martín-Algarra, William H. Sharfman, Shailender Bhatia, Wen-Jen Hwu, Thomas F. Gajewski, Craig L. Slingluff, Sviatoslav M. Kendall, Han Chang, John-William Sidhom, Jonathan P. Schneck, Nils Weinhold, Christine E. Horak, Walter J. Urba
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2988.
https://doi.org/10.1158/1538-7445.AM2017-2988
Published: 01 July 2017
View article titled, Abstract 2988: Immunogenomic analyses of tumor cells and microenvironment in patients with advanced melanoma before and after treatment with nivolumab
Journal Articles

Abstract 632: Genome-scale neoantigen screening using ATLAS™ prioritizes candidate antigens for immunotherapy in a non-small cell lung cancer patient

Lila Ghamsari, Emilio Flano, Judy Jacques, Biao Liu, Zheng Yan, Aula Alami, Christine Kelley, Theresa Zhang, Jonathan Havel, Vladimir Makarov, Taha Merghoub, Jedd D. Wolchok, Matthew Hellman, Pamela Carroll, Timothy Chan, Jessica B. Flechtner
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 632.
https://doi.org/10.1158/1538-7445.AM2017-632
Published: 01 July 2017
View article titled, Abstract 632: Genome-scale neoantigen screening using ATLAS™ prioritizes candidate antigens for immunotherapy in a non-small cell lung cancer patient
Journal Articles

Abstract LB-276: Characterizing tumorigenesis of ovarian cancer across metastatic tumors and circulating, cell-free DNA

Ashley Wood, Sukhinder Sandhu, Matthew Dashkoff, Olga Camacho-Vanegas, Laurie Kurihara, Timothy Harkins, John Martignetti, Vladimir Makarov, Peter Dottino
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-276.
https://doi.org/10.1158/1538-7445.AM2017-LB-276
Published: 01 July 2017
View article titled, Abstract LB-276: Characterizing tumorigenesis of ovarian cancer across metastatic tumors and circulating, cell-free DNA
Journal Articles

Abstract 5391: Low frequency variant detection and tissue-of-origin exploration using liquid biopsies

Justin S. Lenhart, Ashley Wood, Sukhinder Sandhu, Cassie Schumacher, Laurie Kurihara, Vladimir Makarov, Tim Harkins
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5391.
https://doi.org/10.1158/1538-7445.AM2017-5391
Published: 01 July 2017
View article titled, Abstract 5391: Low frequency variant detection and tissue-of-origin exploration using liquid biopsies
Journal Articles

Abstract 5392: Targeted next-generation sequencing of cell-free tumor DNA to longitudinally monitor cancer burden and progression

Jonathan C. Irish, Cassie A. Schumacher, Navya Nair, Olga Camacho-Vanegas, Jordan Rose- Figura, Ashley Wood, Sukhinder Sandhu, Sushma Chaluvadi, Sergey Chupreta, Laurie Kurihara, Timothy Harkins, John A. Martignetti, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5392.
https://doi.org/10.1158/1538-7445.AM2017-5392
Published: 01 July 2017
View article titled, Abstract 5392: Targeted next-generation sequencing of cell-free tumor DNA to longitudinally monitor cancer burden and progression
Journal Articles

Abstract 3637: Targeted exome and panel analysis from low input and FFPE DNA using hybridization capture for cancer genome studies

Sukhinder K. Sandhu, Cassie Schumacher, Laurie Kurihara, Tim Harkins, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3637.
https://doi.org/10.1158/1538-7445.AM2016-3637
Published: 15 July 2016
View article titled, Abstract 3637: Targeted exome and panel analysis from low input and FFPE DNA using hybridization capture for cancer genome studies
Journal Articles

Abstract B32: Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses

Katherine B. Chiappinelli, Pamela L. Strissel, Alexis Desrichard, Huili Li, Christine Henke, Benjamin Akman, Alexander Hein, Neal S. Rote, Leslie M. Cope, Alexandra Snyder, Vladimir Makarov, Sadna Budhu, Jedd Wolchok, Cynthia A. Zahnow, Taha Mergoub, Timothy A. Chan, Reiner Strick, Stephen B. Baylin
Journal: Cancer Research
Cancer Res (2016) 76 (2_Supplement): B32.
https://doi.org/10.1158/1538-7445.CHROMEPI15-B32
Published: 14 January 2016
View article titled, Abstract B32: Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses
Journal Articles

Abstract 4902: Detecting low abundant mutations in circulating cell free DNA and FFPE samples

Julie Laliberte, Catherine Couture, Vladimir Makarov, Cassie Schumacher, Sukhinder Sandhu, Laurie Kurihara, Timothy Harkins
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 4902.
https://doi.org/10.1158/1538-7445.AM2015-4902
Published: 01 August 2015
View article titled, Abstract 4902: Detecting low abundant mutations in circulating cell free DNA and FFPE samples
Journal Articles

Abstract 1051: An assay to detect hypomethylation in circulating cell free DNA and monitor cancer burden

Cassie A. Schumacher, Sukhinder Sandhu, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 1051.
https://doi.org/10.1158/1538-7445.AM2015-1051
Published: 01 August 2015
View article titled, Abstract 1051: An assay to detect hypomethylation in circulating cell free DNA and monitor cancer burden
Journal Articles

Abstract 4151: A novel, fast, and efficient technology for the preparation of high quality NGS libraries.

Laurie Kurihara, Ron Beaubien, Jeff Perry, Vanessa Kelchner, Drew McUsic, Anjali Mishra, Julie Laliberte, Sergey Chupreta, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4151.
https://doi.org/10.1158/1538-7445.AM2013-4151
Published: 15 April 2013
View article titled, Abstract 4151: A novel, fast, and efficient technology for the preparation of high quality NGS libraries.
Journal Articles

Abstract LB-94: Highly specific and sensitive detection of BRAF and KRAS mutations in tumor samples

Anjali Mishra, Sergey Chupreta, Ron Beaubien, Laurie Kurihara, Vanessa Kelchner, Julie LaLiberte, Andrey Mikheykin, Vladimir Makarov
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): LB-94.
https://doi.org/10.1158/1538-7445.AM2012-LB-94
Published: 15 April 2012
View article titled, Abstract LB-94: Highly specific and sensitive detection of BRAF and KRAS mutations in tumor samples