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Journal Articles

Abstract 3763: Detection of tumor-associated gene inactivation in clinical blood draws via cell-free DNA methylation profiling

Sai Chen, Shile Zhang, Tingting Jiang, Jennifer Yen, Yupeng He, Ariel Jaimovich, Yvonne Kim, Dustin Ma, Giao Tran, Daniel P. Gaile, Rebecca J. Nagy, Elena Helman, Han-Yu Chuang
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3763.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3763
Published: 15 June 2022
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Journal Articles

Abstract 3758: Accurate epigenomic estimates of circulating tumor fraction in large-scale clinical data

William W. Greenwald, Yupeng He, Sai Chen, Tingting Jiang, Anton Valouev, Jun Min, Catalin Barbacioru, Daniel P. Gaile, Dustin Ma, Yvonne Kim, Giao Tran, Indira Wu, Ariel Jaimovich, Victoria Raymond, Rebecca J. Nagy, Han-Yu Chuang
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3758.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3758
Published: 15 June 2022
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Journal Articles

Abstract 1220: Accurately genotyping HLA and KIR alleles using cfDNA assay and k-mer based algorithm for immunotherapy

Sante Gnerre, Brian Yik Tak Tsui, Tingting Jiang, Yvonne Kim, Dustin Ma, Indira Wu, Rebecca Nagy, Han-Yu Chuang
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1220.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1220
Published: 15 June 2022
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Journal Articles

Abstract 572: The liquid biopsy Guardant360 CDx has robust performance at low inputs allowing for high rate of returning patient results

Aaron O. Richardson, Aaron Hardin, Soni Shukla, Jing Zhao, Catalin Barbacioru, Hilda Beas, Carin Espenschied, Adrian Bubie, Jamie Hutchins, Han-Yu Chuang, Tingting Jiang, Darya Chudova
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 572.
DOI: https://doi.org/10.1158/1538-7445.AM2021-572
Published: 01 July 2021
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Journal Articles

Abstract 839: Microsatellite instability error correction in cell-free DNA sequencing

Divy S. Kangeyan, Shile Zhang, Sigrid Katz, Brian Crain, Janel Lee, Alex G. Mentzer, Charlene Echegaray, Jennifer Silhavy, Weixin Wu, Tingting Jiang, Chen Zhao, Sven Bilke
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 839.
DOI: https://doi.org/10.1158/1538-7445.AM2020-839
Published: 15 August 2020
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Journal Articles

Abstract 1346: Panel-based tumor mutational burden (TMB) analysis of matched tumor and plasma specimens using Illumina’s TruSight Oncology 500 next-generation sequencing assay

Stephanie B. Hastings, Gunjan Hariani, Victor J. Weigman, Tingting Jiang, Chen Zhao, Rajiv Raja, Traci Pawlowski, Philip Brohawn, Patrick Hurban
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 1346.
DOI: https://doi.org/10.1158/1538-7445.AM2019-1346
Published: 01 July 2019
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Journal Articles

Abstract 435: Accurate measurement of tumor mutation burden through tumor-only sequencing using a 500-gene panel

Alex Steven So, Shannon Kaplan, Chen Zhao, Shile Zhang, Li Liu, Phillip Le, Raakhee Vijayaraghavan, Tingting Jiang, Sven Bilke, Traci Pawlowski, Karen Gutekunst
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 435.
DOI: https://doi.org/10.1158/1538-7445.AM2018-435
Published: 01 July 2018
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Journal Articles

Abstract 5354: Evaluation of quantity, quality and performance with the TruSight® Tumor 170 solid tumor profiling assay of nucleic acids extracted from formalin-fixed paraffin-embedded (FFPE) tissue sections

Jennifer S. LoCoco, Li Teng, Danny Chou, Xiao Chen, Byron Luo, Jennifer Sayne, Ashley Adams, Naseem Ajili, Cody Chivers, Beena Murthy, Laurel Ball, Allan Castaneda, Katie Clark, Brian Crain, Anthony Daulo, Manh Do, Tingting Du, Sarah Dumm, Yonmee Han, Michael Havern, Chia-Ling Hsieh, Tingting Jiang, Suzanne Johansen, Scott Lang, Rachel Liang, Jaime McLean, Yousef Nassiri, Austin Purdy, Jason Rostron, Jennifer Silhavy, June Snedecor, Natasha Talago, Li Teng, Kevin Wu, Chen Zhao, Clare Zlatkov, Ali Kuraishy, Karen Gutekunst, Sohela De Rozieres, Matthew Friedenberg, Han-Yu Chuang, Anne C. Jager
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5354.
DOI: https://doi.org/10.1158/1538-7445.AM2017-5354
Published: 01 July 2017
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Journal Articles

Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Tingting Du, June Snedecor, Jennifer S. LoCoco, Xiao Chen, Laurel Ball, Allan Castaneda, Danny Chou, Katie Clark, Brian Crain, Anthony Daulo, Manh Do, Sarah Dumm, Yonmee Han, Mike Havern, Chia-Ling Hsieh, Tingting Jiang, Suzanne Johansen, Scott Lang, Rachel Liang, Jaime McLean, Yousef Nassiri, Austin Purdy, Jason Rostron, Jennifer Silhavy, Natasha Talago, Li Teng, Kevin Wu, Clare Zlatkov, Chen Zhao, Ali Kuraishy, Karen Gutekunst, Sohela De Rozieres, Matthew Friedenberg, Anne C. Jager, Han-Yu Chuang
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 565.
DOI: https://doi.org/10.1158/1538-7445.AM2017-565
Published: 01 July 2017
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Journal Articles

Abstract 3732: Analytical performance of TruSight® Tumor 170 on small nucleotide variations and gene amplifications using DNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Danny Chou, Xiao Chen, Austin Purdy, Li Teng, Byron Luo, Chen Zhao, Laurel Ball, Allan Castaneda, Katie Clark, Brian Crain, Anthony Daulo, Manh Do, Tingting Du, Sarah Dumm, Yonmee Han, Michael Havern, Chia-Ling Hsieh, Tingting Jiang, Suzanne Johansen, Scott Lang, Rachel Liang, Jennifer S. LoCoco, Jaime McLean, Yousef Nassiri, Jason Rostron, Jennifer Silhavy, June Snedecor, Natasha Talago, Kevin Wu, Clare Zlatkov, Ali Kuraishy, Karen Gutekunst, Sohela De Rozieres, Matthew Friedenberg, Han-Yu Chuang, Anne C. Jager
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3732.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3732
Published: 01 July 2017
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Journal Articles

Immune Gene Expression Is Associated with Genomic Aberrations in Breast Cancer

Anton Safonov, Tingting Jiang, Giampaolo Bianchini, Balázs Győrffy, Thomas Karn, Christos Hatzis, Lajos Pusztai
Journal: Cancer Research
Cancer Res (2017) 77 (12): 3317–3324.
DOI: https://doi.org/10.1158/0008-5472.CAN-16-3478
Published: 14 June 2017
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Includes: Supplementary data
Journal Articles

Abstract PD3-2: Broad exonic DNA diversity is associated with resistance to taxane-FAC chemotherapy in triple negative breast cancer

Tingting Jiang, Weiwei Shi, William F Symmans, Charles Li, James Platt, Rosanna Lau, Vikram B Wali, Richard Lifton, Lajos Pusztai, Christos Hatzis
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): PD3-2.
DOI: https://doi.org/10.1158/1538-7445.SABCS14-PD3-2
Published: 01 May 2015
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Journal Articles

Abstract PD3-4: Reliability of whole exome sequencing for assessing intratumor heterogeneity from breast tumor biopsies

Weiwei Shi, Anees Chagpar, Tingting Jiang, Donald R Lannin, Brigid Killelea, Nina Horowitz, Raymond Lim, James Platt, Charlotte KY Ng, Vikram B Wali, Britta Weigelt, Jorge S Reis-Filho, Christos Hatzis, Lajos Pusztai
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): PD3-4.
DOI: https://doi.org/10.1158/1538-7445.SABCS14-PD3-4
Published: 01 May 2015
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Journal Articles

Abstract P2-03-05: The heterogeneous clinical behavior of luminal breast cancers is associated with different mutational landscapes

Giampaolo Bianchini, Eugenia Galeota, Tingting Jiang, Maurizio Callari, Milvia Zambetti, Takayuki Iwamoto, Thomas Karn, Christos Hatzis, Lajos Pusztai, Luca Gianni
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): P2-03-05.
DOI: https://doi.org/10.1158/1538-7445.SABCS14-P2-03-05
Published: 01 May 2015
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Journal Articles

Abstract 1899: Metabolic vulnerability of breast cancer based on shifts in the expression of metabolic enzyme isoforms.

Weiwei Shi, Aihua Gong, Tingting Jiang, Rene Natowicz, Lajos Pusztai
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 1899.
DOI: https://doi.org/10.1158/1538-7445.AM2013-1899
Published: 15 April 2013
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