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Journal Articles

Abstract 5019: Genomic landscape, tumor heterogeneity and immune-related post-translational regulation in cutaneous melanoma

Jianhui Gong, Gabriel Cruz, Yamei Deng, Maria Virginia Ruiz Cuevas, Chandan Kumar-Sinha, Rahul Mannan, Yi Hsiao, Francesca Petralia, Weiping Ma, Shrabanti Chowdhury, Noshad Hosseini, CPTAC Clinical Proteomic Tumor Analysis Consortium, Gilbert Omenn, Arul Chinnaiyan, Paul Harms, Raghav Jain, Jennifer Kyle, Avi Ma'ayan, Saravana Dhanasekaran, Karl Clauser, Hui Zhang, Alexey Nesvizhskii, Steven Carr, Tao Liu, Pei Wang, Marcin Cieslik
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 5019.
https://doi.org/10.1158/1538-7445.AM2025-5019
Published: 21 April 2025
View articletitled, Abstract 5019: Genomic landscape, tumor heterogeneity and immune-related post-translational regulation in cutaneous melanoma
Journal Articles

Abstract 5068: Spatial architecture and epigenetic programs in IDH-mutant and wildtype glioma

Jingxian Liu, Song Cao, Wagma Caravan, Xiangwei Fang, Preet Lal, Andrew Houston, Yuting Zhao, Faria Anjum Simin, Michael C. Jin, Jennifer Ponce, Robert Fulton, Michael Heinz, Yang Li, Sonika Dahiya, Dimitrios Mathios, Tao Liu, Albert H. Kim, Milan G. Chheda, Li Ding
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 5068.
https://doi.org/10.1158/1538-7445.AM2025-5068
Published: 21 April 2025
View articletitled, Abstract 5068: Spatial architecture and epigenetic programs in IDH-mutant and wildtype glioma
Journal Articles

Abstract 2613: The role of the RNA methyltransferase RNAMT1 as a tumorigenic driver and therapeutic target in neuroblastoma

Kian Chung Chok, Kenny Ip, Jing Wu, Satyanarayana Gadde, Sujanna Mondal, Justin Wong, Belamy Cheung, Tao Liu
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 2613.
https://doi.org/10.1158/1538-7445.AM2025-2613
Published: 21 April 2025
View articletitled, Abstract 2613: The role of the RNA methyltransferase RNAMT1 as a tumorigenic driver and therapeutic target in neuroblastoma
Journal Articles

Abstract 3749: Multi-Omic Characterization of Treatment-Naive Acute Myeloid Leukemia Reveals Subtype-Specific Features and Biomarkers of Drug Response

Yi Hsiao, Alec Chu, Yamei Deng, Chenwei Wang, Jennifer Kyle, Yongchao Dou, Jame Pino, Camilo Posso, Leanne Henry, Lijun Chen, Ginny Xiaohe Li, Mamie Lih, Yifat Geffen, Fengchao Yu, Li Ding, Gilbert S. Omenn, Chandan Kumar, Saravana M. Dhanasekaran, Elie Traer, Jefferey W. Tyner, Hui Zhang, Tao Liu, Sara S. Gosline, Bing Zhang, Arul M. Chinnaiyan, Alexey I. Nesvizhskii, Marcin Cieslik, The CPTAC Consortium
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 3749.
https://doi.org/10.1158/1538-7445.AM2025-3749
Published: 21 April 2025
View articletitled, Abstract 3749: Multi-Omic Characterization of Treatment-Naive Acute Myeloid Leukemia Reveals Subtype-Specific Features and Biomarkers of Drug Response
Journal Articles

Abstract 4292: Targeting YB-1 as a treatment strategy for high-grade serous ovarian carcinoma

Dhanir Tailor, Fernando Jose Garcia-Marques, Abel Bermudez, Wenqi Li, Arpit Dheeraj, Annah Rolig, Chia-Feng Tsai, Tao Liu, Tanja Pejovic, Sharon J. Pitteri, Sanjay V. Malhotra
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 4292.
https://doi.org/10.1158/1538-7445.AM2025-4292
Published: 21 April 2025
View articletitled, Abstract 4292: Targeting YB-1 as a treatment strategy for high-grade serous ovarian carcinoma
Journal Articles

Abstract 1659: ETX-636, a novel allosteric pan-mutant-selective PI3Kα dual inhibitor and degrader with best-in-class potential

Robert F. Koncar, Mingzong Li, Jingyan Gao, Fei Pang, Ying Lin, Raj Nagaraja, Yong Tang, Hannah Szeto, Zipeng Fan, Karan Kapoor, Robbie Chen, Eric Simone, Minghong Hao, Shengfang Jin, Tao Liu, Meghana Kulkarni, Jeffery Kutok
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 1659.
https://doi.org/10.1158/1538-7445.AM2025-1659
Published: 21 April 2025
View articletitled, Abstract 1659: ETX-636, a novel allosteric pan-mutant-selective PI3Kα dual inhibitor and degrader with best-in-class potential
Journal Articles

Abstract 2608: The super enhancer-driven long noncoding RNA lncNB promotes neuroblastoma tumorigenesis by interacting with MSI2 protein and is targetable by small molecule compounds

Sujanna Mondal, Pei Y. Liu, Janith Seneviratne, Antoine De Weck, Pooja Venkat, Chelsea Mayoh, Jing Wu, Jesper Maag, Jingwei Chen, Matthew Wong, Nenad Bartonicek, Poh Khoo, Lei Jin, Louise E. Ludlow, David S. Ziegler, Toby Trahair, Pieter Mestdagh, Belamy B. Cheung, Jinyan Li, Marcel E. Dinger, Ian Street, Xu D. Zhang, Glenn M. Marshall, Tao Liu
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 2608.
https://doi.org/10.1158/1538-7445.AM2025-2608
Published: 21 April 2025
View articletitled, Abstract 2608: The super enhancer-driven long noncoding RNA lncNB promotes neuroblastoma tumorigenesis by interacting with MSI2 protein and is targetable by small molecule compounds
Journal Articles

MILIP Binding to tRNAs Promotes Protein Synthesis to Drive Triple-Negative Breast Cancer

Si Min Zheng, Yu Chen Feng, Qin Zhu, Ruo Qi Li, Qian Qian Yan, Liu Teng, Yi Meng Yue, Man Man Han, Kaihong Ye, Sheng Nan Zhang, Teng Fei Qi, Cai Xia Tang, Xiao Hong Zhao, Yuan Yuan Zhang, Liang Xu, Ran Xu, Jun Xing, Mark Baker, Tao Liu, Rick F. Thorne, Lei Jin, Thomas Preiss, Xu Dong Zhang, Shundong Cang, Jin Nan Gao
Journal: Cancer Research
Cancer Res (2024) 84 (9): 1460–1474.
https://doi.org/10.1158/0008-5472.CAN-23-3046
Published: 02 May 2024
View articletitled, MILIP Binding to tRNAs Promotes Protein Synthesis to Drive Triple-Negative Breast Cancer
Open the PDF for MILIP Binding to tRNAs Promotes Protein Synthesis to Drive Triple-Negative Breast Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract PO2-16-04: Proteogenomic characterization of non-luminal A versus luminal A breast cancer tumor cells enriched by laser microdissection

Praveen Kumar Raj Kumar, Xiaoying Lin, Tao Liu, Lori Sturtz, Marina Gritsenko, Vladislav Petyuk, Tyler Sagendorf, Brenda Deyarmin, Jianfang Liu, Anupama Praveen-Kumar, Guisong Wang, Jason McDermott, Anil Shukla, Ronald Moore, Matthew Monroe, Bobbie-Jo Webb-Robertson, Jeffrey Hooke, Leigh Fantacone-Campbell, Brad Mostoller, Leonid Kvecher, Jennifer Kane, Jennifer Melley, Stella Somiari, Patrick Soon-Shiong, Richard Smith, Richard Mural, Karin Rodland, Craig Shriver, Albert Kovatich, Hai Hu
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO2-16-04.
https://doi.org/10.1158/1538-7445.SABCS23-PO2-16-04
Published: 02 May 2024
View articletitled, Abstract PO2-16-04: Proteogenomic characterization of non-luminal A versus luminal A breast cancer tumor cells enriched by laser microdissection
Journal Articles

Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults

Nicole Tignor, Mateusz P. Koptyra, Shrabanti Chowdhury, Weiping Ma, Jo Lynne Rokita, Marina Gritsenko, Xiaoyu Song, Giacomo B. Marino, Eden Z. Deng, Francesca Petralia, Azra Krek, Dmitry Rykunov, Felipe da Veiga Leprevost, Noshad Hosseini, Komal S. Rathi, Yingwei Hu, Simona Migliozzi, Tomer Yaron, Weijia Fu, Bo Zhang, Yuankun Zhu, Miguel A. Brown, Jeffrey R. Whiteaker, Clinical Proteomics Tumor Analysis Consortium (CPTAC), Children’s Brain Tumor Network (CBTN), Mehdi Mesri, Ana I. Robles, Karin Rodland, Lewis C. Cantley, Antonio Iavarone, Kenneth Aldape, Marcin Cieślik, Alexey I. Nesvizhskii, Joseph E. Ippolito, Joshua B. Rubin, Amanda G. Paulovich, Hui Zhang, Avi Ma'ayan, Tao Liu, Phillip B. Storm, Adam C. Resnick, Brian R. Rood, Pei Wang
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3955.
https://doi.org/10.1158/1538-7445.AM2024-3955
Published: 22 March 2024
View articletitled, Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults
Journal Articles

Abstract 7052: p53 underpins a dependence on oxidative phosphorylation in glycolysis-competent colorectal cancer

Xiao Hong Zhao, Man Man Han, Qian Qian Yan, Yi Meng Yue, Kai Hong Ye, Yuan Yuan Zhang, Liu Teng, Liang Xu, Xiao Jing Shi, Ting La, Yu Chen Feng, Ran Xu, Vinod K. Narayana, David P. De Souza, Tao Liu, Mark Baker, Rick F. Thorne, Xu Dong Zhang, Song Chen, Lei Jin
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7052.
https://doi.org/10.1158/1538-7445.AM2024-7052
Published: 22 March 2024
View articletitled, Abstract 7052: p53 underpins a dependence on oxidative phosphorylation in glycolysis-competent colorectal cancer
Journal Articles

Abstract 6153: Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma

Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H. Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md A. Alam, Jaydutt V. Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6153.
https://doi.org/10.1158/1538-7445.AM2024-6153
Published: 22 March 2024
View articletitled, Abstract 6153: Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma
Journal Articles

Abstract 1844: Proteomic characterization of decitabine resistance in acute myeloid leukemia reveals signaling pathway crosstalk dampens the effectiveness of combination therapy

James C. Pino, Camilo Posso, Setareh Sharzehi, Sara Gosline, Chelsea Hutchinson-Bunch, Elie Traer, Paul D. Piehowski, Karin D. D. Rodland, Jeffrey W. Tyner, Tao Liu, Anupriya Agarwal
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1844.
https://doi.org/10.1158/1538-7445.AM2024-1844
Published: 22 March 2024
View articletitled, Abstract 1844: Proteomic characterization of decitabine resistance in acute myeloid leukemia reveals signaling pathway crosstalk dampens the effectiveness of combination therapy
Journal Articles

Abstract 7354: Proteogenomic and metabolomic characterization of acute myeloid leukemia

Alec Chu, Yi Hsiao, Yamei Deng, Chenwei Wang, Jennifer Kyle, Yongchao Dou, James C. Pino, Camilo Posso, Leanne Henry, Lijun Chen, Ginny Xiaohe Li, Tung-Shing Mamie Lih, Yifat Geffen, Fengchao Yu, Li Ding, Gil Omenn, Chandan Kumar, Saravana M. Dhanasekaran, Elie Traer, Jeffrey W. Tyner, Hui Zhang, Tao Liu, Sara Gosline, Bing Zhang, Arul Chinnaiyan, Alexey I. Nesvizhskii, Marcin Cieslik, The CPTAC Consortium
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7354.
https://doi.org/10.1158/1538-7445.AM2024-7354
Published: 22 March 2024
View articletitled, Abstract 7354: Proteogenomic and metabolomic characterization of acute myeloid leukemia
Journal Articles

Abstract B039: Identification of ovarian cancer protein biomarkers in liquid-based Pap tests

Amy P.N. Skubitz, Kristin L.M. Boylan, Ashley J. Petersen, Joshua R. Hansen, Tao Liu, Yuqian Gao, Yi-Ting Wang, Karin D. Rodland, Melissa A. Geller, Peter A. Argenta, Samantha L. Hoffman, Paul D. Piehowski
Journal: Cancer Research
Cancer Res (2024) 84 (5_Supplement_2): B039.
https://doi.org/10.1158/1538-7445.OVARIAN23-B039
Published: 04 March 2024
View articletitled, Abstract B039: Identification of ovarian cancer protein biomarkers in liquid-based Pap tests
Journal Articles

Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma

Lijun Yao, Julia T. Wang, Reyka G. Jayasinghe, Julie O'Neal, Chia-Feng Tsai, Michael P. Rettig, Yizhe Song, Ruiyang Liu, Yanyan Zhao, Omar M. Ibrahim, Mark A. Fiala, Julie M. Fortier, Siqi Chen, Leah Gehrs, Fernanda Martins Rodrigues, Michael C. Wendl, Daniel Kohnen, Andrew Shinkle, Song Cao, Steven M. Foltz, Daniel Cui Zhou, Erik Storrs, Matthew A. Wyczalkowski, Smrithi Mani, Scott R. Goldsmith, Ying Zhu, Mark Hamilton, Tao Liu, Feng Chen, Ravi Vij, Li Ding, John F. DiPersio
Journal: Cancer Research
Cancer Res (2023) 83 (8): 1214–1233.
https://doi.org/10.1158/0008-5472.CAN-22-1769
Published: 14 April 2023
View articletitled, Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma
Open the PDF for Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma in another window
Includes: Supplementary data
Journal Articles

Abstract 470: A MDM2 degrader inhibits cell proliferation and growth of MDM2-overexpressing acute lymphoblastic leukemia in SCID mice

tao Liu, Lubing Gu, Anna Mui, Zhongzhi Wu, Wei Li, Muxiang Zhou
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 470.
https://doi.org/10.1158/1538-7445.AM2023-470
Published: 04 April 2023
View articletitled, Abstract 470: A MDM2 degrader inhibits cell proliferation and growth of MDM2-overexpressing acute lymphoblastic leukemia in SCID mice
Journal Articles

Abstract 3687: Disruption of nucleotide homeostasis confers cancer cell susceptibility to oxidative phosphorylation inhibition independently of energy depletion

Xiaohong Zhao, Yuan Yuan Zhang, Liang Xu, Ting La, Yu Chen Feng, Hai Jie Tang, Ran Xu, Vinod K. Narayana, David P. De Souza, Lake-Ee Quek, Jeff Holst, Rick F. Thorne, Mark Baker, Tao Liu, Lei Jin, Xu Dong Zhang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3687.
https://doi.org/10.1158/1538-7445.AM2023-3687
Published: 04 April 2023
View articletitled, Abstract 3687: Disruption of nucleotide homeostasis confers cancer cell susceptibility to oxidative phosphorylation inhibition independently of energy depletion
Journal Articles

Abstract 955: Proteogenomic insights suggest druggable pathways in endometrial cancer

Lizabeth Katsnelson, Yongchao Dou, Marina A. Gritsenko, Matthew L. Anderson, Karin D. Rodland, Bing Zhang, Tao Liu, David Fenyö, the Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 955.
https://doi.org/10.1158/1538-7445.AM2023-955
Published: 04 April 2023
View articletitled, Abstract 955: Proteogenomic insights suggest druggable pathways in endometrial cancer
Journal Articles

Abstract 3172: Mapping the molecular landscape of acute myeloid leukemia enables prediction of drug response from proteogenomic data

James C. Pino, Camilo Posso, Sunil K. Joshi, Michael Nestor, Jamie Moon, Joshua R. Hansen, Marina A. Gritsenko, Chelsea Hutchinson-Bunch, Karl K. Weitz, Kevin Watanabe-Smith, Jason E. McDermott, Brian J. Druker, Tao Liu, Jeffrey W. Tyner, Anupriya Agarwal, Elie Traer, Paul D. Piehowski, Cristina E. Tognon, Karin D. Rodland, Sara J. Gosline
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3172.
https://doi.org/10.1158/1538-7445.AM2023-3172
Published: 04 April 2023
View articletitled, Abstract 3172: Mapping the molecular landscape of acute myeloid leukemia enables prediction of drug response from proteogenomic data