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Stephen B. Gruber
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Journal Articles

Large-Scale Alternative Polyadenylation-Wide Association Studies to Identify Putative Cancer Susceptibility Genes

Xingyi Guo, Jie Ping, Yaohua Yang, Xinwan Su, Xiao-Ou Shu, Wanqing Wen, Zhishan Chen, Yunjing Zhang, Ran Tao, Guochong Jia, Jingni He, Qiuyin Cai, Qingrun Zhang, Graham G. Giles, Rachel Pearlman, Gad Rennert, Pavel Vodicka, Amanda Phipps, Stephen B. Gruber, Graham Casey, Ulrike Peters, Jirong Long, Weiqiang Lin, Wei Zheng
Journal: Cancer Research
Cancer Res (2024) 84 (16): 2707–2719.
https://doi.org/10.1158/0008-5472.CAN-24-0521
Published: 15 August 2024
View article titled, Large-Scale Alternative Polyadenylation-Wide Association Studies to Identify Putative Cancer Susceptibility Genes
Open the PDF for Large-Scale Alternative Polyadenylation-Wide Association Studies to Identify Putative Cancer Susceptibility Genes in another window
Includes: Supplementary data
Journal Articles

Abstract LB386: Weakly-supervised prediction of tumor infiltrating lymphocytes per high power field from colorectal cancer histopathology slides using regression transformers

Omar S. El Nahhas, Joseph D. Bonner, Joel K. Greenson, Daniel B. Schmolze, Lawrence Shaktah, Jonathan Salazar, Lorena Reynaga, Sidney Lindsey, Jenny Lu, Victor Moreno, Stephanie L. Schmit, Ya-Yu Tsai, Stanley R. Hamilton, Gad Rennert, Jakob N. Kather, Stephen B. Gruber
Journal: Cancer Research
Cancer Res (2024) 84 (7_Supplement): LB386.
https://doi.org/10.1158/1538-7445.AM2024-LB386
Published: 05 April 2024
View article titled, Abstract LB386: Weakly-supervised prediction of tumor infiltrating lymphocytes per high power field from colorectal cancer histopathology slides using regression transformers
Journal Articles

Abstract LB384: Artificial intelligence measures of tumor infiltrating lymphocytes predict colorectal cancer-specific and overall survival

Stephen B. Gruber, Omar S. El Nahhas, Joseph D. Bonner, Joel K. Greenson, Daniel Schmolze, Lawrence Shaktah, Jonathan Salazar, Lorena Reynaga, Sidney Lindsey, Jenny Lu, Allen Mao, Victor Moreno, Stephani L. Schmit, Ya-Yu Tsai, Stanley R. Hamilton, Gad Rennert, Jakob N. Kather
Journal: Cancer Research
Cancer Res (2024) 84 (7_Supplement): LB384.
https://doi.org/10.1158/1538-7445.AM2024-LB384
Published: 05 April 2024
View article titled, Abstract LB384: Artificial intelligence measures of tumor infiltrating lymphocytes predict colorectal cancer-specific and overall survival
Journal Articles

Abstract 6142: Interactions of processed meat and red meat intake with pathway-based polygenic risk scores for colorectal cancer: A novel approach for PRSs construction

Joel Sanchez Mendez, Mariana C. Stern, Yubo Fu, John Morrison, Juan P. Lewinger, Eric Kawaguchi, Bryan Queme, Huaiyu Mi, Flora Qu, Ulrike Peters, Li Hsu, Stephen B. Gruber, Li Li, Michelle Cotterchio, Loic Le Marchand, Andrew J. Pellat, Elizabeth A. Platz, W James Gauderman
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6142.
https://doi.org/10.1158/1538-7445.AM2024-6142
Published: 22 March 2024
View article titled, Abstract 6142: Interactions of processed meat and red meat intake with pathway-based polygenic risk scores for colorectal cancer: A novel approach for PRSs construction
Journal Articles

A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk

Elom K. Aglago, Andre Kim, Yi Lin, Conghui Qu, Marina Evangelou, Yu Ren, John Morrison, Demetrius Albanes, Volker Arndt, Elizabeth L. Barry, James W. Baurley, Sonja I. Berndt, Stephanie A. Bien, D. Timothy Bishop, Emmanouil Bouras, Hermann Brenner, Daniel D. Buchanan, Arif Budiarto, Robert Carreras-Torres, Graham Casey, Tjeng Wawan Cenggoro, Andrew T. Chan, Jenny Chang-Claude, Xuechen Chen, David V. Conti, Matthew Devall, Virginia Diez-Obrero, Niki Dimou, David Drew, Jane C. Figueiredo, Steven Gallinger, Graham G. Giles, Stephen B. Gruber, Andrea Gsur, Marc J. Gunter, Heather Hampel, Sophia Harlid, Akihisa Hidaka, Tabitha A. Harrison, Michael Hoffmeister, Jeroen R. Huyghe, Mark A. Jenkins, Kristina Jordahl, Amit D. Joshi, Eric S. Kawaguchi, Temitope O. Keku, Anshul Kundaje, Susanna C. Larsson, Loic Le Marchand, Juan Pablo Lewinger, Li Li, Brigid M. Lynch, Bharuno Mahesworo, Marko Mandic, Mireia Obón-Santacana, Victor Moreno, Neil Murphy, Hongmei Nan, Rami Nassir, Polly A. Newcomb, Shuji Ogino, Jennifer Ose, Rish K. Pai, Julie R. Palmer, Nikos Papadimitriou, Bens Pardamean, Anita R. Peoples, Elizabeth A. Platz, John D. Potter, Ross L. Prentice, Gad Rennert, Edward Ruiz-Narvaez, Lori C. Sakoda, Peter C. Scacheri, Stephanie L. Schmit, Robert E. Schoen, Anna Shcherbina, Martha L. Slattery, Mariana C. Stern, Yu-Ru Su, Catherine M. Tangen, Stephen N. Thibodeau, Duncan C. Thomas, Yu Tian, Cornelia M. Ulrich, Franzel JB van Duijnhoven, Bethany Van Guelpen, Kala Visvanathan, Pavel Vodicka, Jun Wang, Emily White, Alicja Wolk, Michael O. Woods, Anna H. Wu, Natalia Zemlianskaia, Li Hsu, W. James Gauderman, Ulrike Peters, Konstantinos K. Tsilidis, Peter T. Campbell
Journal: Cancer Research
Cancer Res (2023) 83 (15): 2572–2583.
https://doi.org/10.1158/0008-5472.CAN-22-3713
Published: 01 August 2023
View article titled, A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk
Open the PDF for A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk in another window
Includes: Supplementary data
Journal Articles

Abstract 5223: Circulating lipoprotein lipids and colorectal cancer risk: A Mendelian randomization analysis from the GECCO consortium

Lili Liu, Wanqing Wen, Jirong Long, Themistocles L Assimes, Luis Bujanda, Stephen B Gruber, Sébastien Küry, Brigid Lynch, Conghui Qu, Minta Thomas, Emily White, Michael O. Woods, Ulrike Peters, Wei Zheng
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5223.
https://doi.org/10.1158/1538-7445.AM2023-5223
Published: 04 April 2023
View article titled, Abstract 5223: Circulating lipoprotein lipids and colorectal cancer risk: A Mendelian randomization analysis from the GECCO consortium
Journal Articles

Abstract 5874: Heterozygote advantage at HLA class I and II loci and colorectal cancer risk

Ya-Yu Tsai, Chenxu Qu, Joseph D. Bonner, Rebeca Sanz-Pamplona, Sidney Lindsey, Marilena Melas, Kevin J. McDonnell, Gregory E. Idos, Christopher P. Walker, Kevin K. Tsang, Diane M. Da Silva, Ferran Moratalla, Asaf Maoz, Hedy S. Rennert, W. Martin Kast, Joel K. Greenson, Victor Moreno, Gad Rennert, Stephen B. Gruber, Stephanie L. Schmit
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5874.
https://doi.org/10.1158/1538-7445.AM2022-5874
Published: 15 June 2022
View article titled, Abstract 5874: Heterozygote advantage at HLA class I and II loci and colorectal cancer risk
Journal Articles

Abstract 819: Consumption of fruits, vegetables and fiber and risk of colorectal cancer: A gene environment interaction analysis

Nikos Papadimitriou, Akihisa Hidaka, Andre Kim, Niki Dimou, Neil Murphy, Sonja I. Berndt, David Conti, Peter T. Campbell, Graham Casey, Jane C. Figueiredo, Konstantinos K. Tsilidis, Stephen B. Gruber, Sophia Harlid, Yi Lin, Victor Moreno, Lori C. Sakoda, Virginia D. Obrero, Li Hsu, William J. Gauderman, Marc Gunter, Ulrike Peters
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 819.
https://doi.org/10.1158/1538-7445.AM2021-819
Published: 01 July 2021
View article titled, Abstract 819: Consumption of fruits, vegetables and fiber and risk of colorectal cancer: A gene environment interaction analysis
Journal Articles

Abstract 818: Association of polygenic risk score and menopausal hormone therapy for colorectal cancer risk

Yu Tian, Yi Lin, Andre E. Kim, Stephanie A. Bien, Polly A. Newcomb, Graham Casey, Elizabeth A. Platz, Loic Le Marchand, Peter T. Campbell, Hermann Brenner, Michael Hoffmeister, Feng Guo, Xuechen Chen, Marc J. Gunter, Niki Dimou, Stephen B. Gruber, Andrew T. Chan, Amit D. Joshi, Sonja I. Berndt, Emily White, Victor Moreno, Ross L. Prentice, Ulrike Peters, William Gauderman, Li Hsu, Jenny Chang-Claude
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 818.
https://doi.org/10.1158/1538-7445.AM2021-818
Published: 01 July 2021
View article titled, Abstract 818: Association of polygenic risk score and menopausal hormone therapy for colorectal cancer risk
Journal Articles

Abstract 817: Probing the diabetes - colorectal cancer link using gene - environment interaction analyses

Niki Dimou, Andre E. Kim, Orlagh Flanagan, Neil Murphy, Emmanouil Bouras, Peter T. Campbell, Graham Casey, Steven Gallinger, Stephen B. Gruber, Li Hsu, Mark A. Jenkins, Yi Lin, Victor Moreno, Conghui Qu, Edward Ruiz-Narvaez, Mariana C. Stern, Yu Tian, Kostas Tsilidis, W. James Gauderman, Marc J. Gunter, Ulrike Peters
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 817.
https://doi.org/10.1158/1538-7445.AM2021-817
Published: 01 July 2021
View article titled, Abstract 817: Probing the diabetes - colorectal cancer link using gene - environment interaction analyses
Journal Articles

Abstract 881: Benchmarking genome-wide polygenic risk score development techniques in colorectal cancer risk prediction

Minta Thomas, Lori C Sakoda, Jeffrey K Lee, Mark A Jenkins, Andrea Burnett-Hartman, Heather Hampel, Elisabeth A Rosenthal, Hermann Brenner, Jenny Chang-Claude, Marc J Gunter, Polly A Newcomb, Steven Gallinger, Tabitha A Harrison, Graham Casey, Victor Moreno, Gail P Jarvik, Stephen B Gruber, Robert E Schoen, Andrew T Chan, Richard B Hayes, Douglas A Corley, Ulrike Peters, Li Hsu
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 881.
https://doi.org/10.1158/1538-7445.AM2021-881
Published: 01 July 2021
View article titled, Abstract 881: Benchmarking genome-wide polygenic risk score development techniques in colorectal cancer risk prediction
Journal Articles

Abstract 835: T-cell abundance, clonality and disease specific survival in colorectal cancer

Joseph Bonner, Sephanie L. Schmit, Sidney S. Lindsey, Ya-Yu Tsai, Rebeca Sanz-Pamplona, M. Henar Alonso, Marilena Melas, Hedy S. Rennert, Kevin J. McDonnell, Gregory Idos, Christopher P. Walker, W. Martin Kast, Diane Da Silva, Harlan S. Robins, Joel K. Greenson, Victor Moreno, Gad Rennert, Stephen B. Gruber
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 835.
https://doi.org/10.1158/1538-7445.AM2021-835
Published: 01 July 2021
View article titled, Abstract 835: T-cell abundance, clonality and disease specific survival in colorectal cancer
Journal Articles

Abstract 824: Germline genetic regulation of the adaptive immune response in colorectal cancer

Stephanie L. Schmit, Ya-Yu Tsai, Joseph Bonner, Rebeca Sanz-Pamplona, Amit D. Joshi, Sidney S. Lindsey, Marilena Melas, Kevin J. McDonnell, Gregory E. Idos, Christopher P. Walker, W. Martin Kast, Diane Da Silva, Tomotaka Ugai, Hedy S. Rennert, Harlan S. Robins, Joel K. Greenson, Shuji Ogino, Victor Moreno, Gad Rennert, Stephen B. Gruber
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 824.
https://doi.org/10.1158/1538-7445.AM2021-824
Published: 01 July 2021
View article titled, Abstract 824: Germline genetic regulation of the adaptive immune response in colorectal cancer
Journal Articles

Abstract 2737: Clinical and epidemiologic predictors of clonal immune responses in colorectal cancer

Stephen B. Gruber, Joseph D. Bonner, Sidney S. Lindsey, Ya-Yu Tsai, Rebeca Sanz-Pamplona, M. Henar Alonso, Marilena Melas, Hedy S. Rennert, Kevin J. McDonnell, Gregory E. Idos, Christopher P. Walker, W. Martin Kast, Diane Da Silva, Harlan S. Robins, Joel K. Greenson, Victor Moreno, Stephanie L. Schmit, Gad Rennert
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2737.
https://doi.org/10.1158/1538-7445.AM2021-2737
Published: 01 July 2021
View article titled, Abstract 2737: Clinical and epidemiologic predictors of clonal immune responses in colorectal cancer
Journal Articles

Abstract 2685: Identification of circulating protein biomarkers for colorectal cancer risk: A genetic instrument analysis

Xiang Shu, Xiao-ou Shu, Jirong Long, Qiuyin Cai, Conghui Qu, Stephanie L. Schmit, Chenxu Qu, Sonja I. Berndt, Peter T. Campbell, Andrew T. Chan, Graham G. Giles, Andrea Gsur, Michael Hoffmeister, Mark A. Jenkins, Sanford D. Markowitz, Li Li, Gad Rennert, Kenneth Offit, David Conti, Annika Lindblom, Graham Casey, Stephen B. Gruber, Ulrike Peters, Wei Zheng
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2685.
https://doi.org/10.1158/1538-7445.AM2019-2685
Published: 01 July 2019
View article titled, Abstract 2685: Identification of circulating protein biomarkers for colorectal cancer risk: A genetic instrument analysis
Journal Articles

Abstract 2332: Tumor infiltrating lymphocytes, immunoSeq, and CMS classification in the molecular epidemiology of colorectal cancer study

Marilena Melas, Charalampos Lazaris, Stephanie L. Schmit, Asaf Maoz, Rebeca Sanz Pamplona, Chenxu Qu, Joel K. Greenson, Rork Kuick, Flavio Lejbkowicz, Hedy S. Rennert, Christopher P. Walker, Chase M. Bowen, Diane M. Da Silva, W. Martin Kast, Gregory E. Idos, Kevin J. McDonnell, Victor Moreno, Gad Rennert, Stephen B. Gruber
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2332.
https://doi.org/10.1158/1538-7445.AM2019-2332
Published: 01 July 2019
View article titled, Abstract 2332: Tumor infiltrating lymphocytes, immunoSeq, and CMS classification in the molecular epidemiology of colorectal cancer study
Journal Articles

Abstract 235: Type 2 diabetes and glycemic traits in relation to colorectal cancer risk: A Mendelian randomization study

Mingyang Song, Yiwen Lu, Marc Gunter, Neil Murphy, Barbara L. Banbury, Wenjie Ma, Jennifer Prescott, Graham Casey, Stephen B. Gruber, Edward L. Giovannucci, Ulrike Peters, Andrew T. Chan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 235.
https://doi.org/10.1158/1538-7445.AM2018-235
Published: 01 July 2018
View article titled, Abstract 235: Type 2 diabetes and glycemic traits in relation to colorectal cancer risk: A Mendelian randomization study
Journal Articles

Abstract 4746: Microbes in the tumor microenvironment: Bacterial influences on host immunity in colorectal cancer

Christine M. Pierce, Bo-young Hong, Hannah J. Hoehn, Maria F. Gomez, Marilena Melas, Kevin McDonnell, Youngchul Kim, Erica Sodergren, George Weinstock, Hedy S. Rennert, Thomas Giordano, Joel Greenson, Gad Rennert, Stephen B. Gruber, Stephanie L. Schmit
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4746.
https://doi.org/10.1158/1538-7445.AM2018-4746
Published: 01 July 2018
View article titled, Abstract 4746: Microbes in the tumor microenvironment: Bacterial influences on host immunity in colorectal cancer
Journal Articles

Abstract A17: Molecular and clinicopathological features of native Nigerian colorectal cancer

David O. Irabor, Marilena Melas, Stephen B. Gruber, Chanjuan Shi, Leon Raskin
Journal: Cancer Research
Cancer Res (2017) 77 (22_Supplement): A17.
https://doi.org/10.1158/1538-7445.NEWFRONT17-A17
Published: 14 November 2017
View article titled, Abstract A17: Molecular and clinicopathological features of native Nigerian colorectal cancer
Journal Articles

Cross-Cancer Analysis Reveals Novel Pleiotropic Associations—Response

Rayjean J. Hung, Gordon Fehringer, Graham Casey, Stephen B. Gruber, Ulrike Peters, Ellen L. Goode, Thomas A. Sellers, Christopher A. Haiman, David J. Hunter, Peter Kraft, Christopher I. Amos, Matthew L. Freedman, Michael D. Wilson
Journal: Cancer Research
Cancer Res (2017) 77 (21): 6045–6046.
https://doi.org/10.1158/0008-5472.CAN-17-1584
Published: 31 October 2017
View article titled, Cross-Cancer Analysis Reveals Novel Pleiotropic Associations—Response
Open the PDF for Cross-Cancer Analysis Reveals Novel Pleiotropic Associations—Response in another window