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Journal Articles

Abstract 1885: Potent tumoricidal activity of a FGFR4 CART in rhabdomyosarcoma

Adam Cheuk, Meijie Tian, Jeetendra Kumar, Peter Azorsa, Nityashree Shivaprasad, Dina Schneider, Berkley Gryder, Jun Wei, Young Song, Xinyu Wen, Sivasish Sindiri, Joon-Yong Chung, Zhongyu Zhu, Dimiter Dimitrov, Stephen Hewitt, Boro Dropulic, Rimas Orentas, Javed Khan
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 1885.
DOI: https://doi.org/10.1158/1538-7445.AM2021-1885
Published: 01 July 2021
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Journal Articles

Abstract 5871: Immunogenomic approaches to optimize immunotherapeutic targeting of neuroblastoma

Meijie Tian, Adam Tai-Chi Cheuk, Yong Song, Sivasish Sindiri, Nan Li, Christopher M. Dower, Mitchell Ho, Bradley St Croix, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5871.
DOI: https://doi.org/10.1158/1538-7445.AM2020-5871
Published: 15 August 2020
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Journal Articles

Abstract 6613: Identification of targetable HLA*A2:01 restricted peptides in osteosarcoma

David Milewski, Sivasish Sindiri, Jun S. Wei, Andrew Brohl, Young Song, Xinyu Wen, Andrew Qi, Udayan Guha, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 6613.
DOI: https://doi.org/10.1158/1538-7445.AM2020-6613
Published: 15 August 2020
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Journal Articles

Abstract 3445: Immuno-transcriptomic profiling identifies actionable genomic alterations in pediatric solid malignancies

Jun S. Wei, Andrew S. Brohl, Sivasish Sindiri, David Milewski, Young K. Song, Sushma Nagaraj, Vineela Gangalapudi, Xinyu Wen, Marc Ladanyi, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3445.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3445
Published: 15 August 2020
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Journal Articles

Abstract A13: Immunogenomic approaches to optimize immunotherapeutic targeting of neuroblastoma

Meijie Tian, Adam Tai-Chi Cheuk, Jeetendra Kumar, Young K. Song, Sivasish Sindiri, Nan Li, Christopher M. Dower, Mitchell Ho, Brad St. Croix, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): A13.
DOI: https://doi.org/10.1158/1538-7445.PEDCA19-A13
Published: 15 July 2020
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Journal Articles

Abstract PR17: Immunogenomic landscape of pediatric solid malignancies

Jun S. Wei, Andrew S. Brohl, Sivasish Sindiri, Young K. Song, Sushma Najaraj, Vineela Gangalapudi, Xinyu Wen, Marc Ladanyi, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): PR17.
DOI: https://doi.org/10.1158/1538-7445.PEDCA19-PR17
Published: 15 July 2020
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Journal Articles

Abstract A08: Development of FGFR4-specific chimeric antibody receptor (CAR) T cell and bispecific T cell engager (BiTE) for rhabdomyosarcoma (RMS) immunotherapy

Adam Cheuk, Nityashree Shivaprasad, Dina Schneider, Marielle Yohe, Meijie Tan, Peter Azorsa, Ronald Sams, Silvia Pomella, Berkley Gryder, Rossella Rota, Ben Stanton, Jun Wei, Young Song, Xinyu Wen, Sivasish Sindiri, Jeetendra Kumar, Robert Hawley, Joon-Yong Chung, Doncho Zhelev, Zhongyu Zhu, Dimiter Dimitrov, Stephen Hewitt, Boro Dropulic, Rimas Orentas, Javed Khan
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): A08.
DOI: https://doi.org/10.1158/1538-7445.PEDCA19-A08
Published: 15 July 2020
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Journal Articles

Abstract LB-056: An integrated genomic, epigenetic, proteomic, and single cell analysis of pediatric B cell acute lymphoblastic leukemia to elucidate resistance mechanisms to CD19 CAR T cell therapy

Katherine E. Masih, Rebecca Gardner, Berkley E. Gryder, Justin Lack, Benjamin Z. Stanton, Ashley Wilson, Olivia Finney, Sivasish Sindiri, Young Song, Zachary Rae, Michael Kelly, Chaoyu Wang, Xinyu Wen, Adam Cheuk, Jun S. Wei, Michael Jensen, Rimas Orentas, Javed Khan
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): LB-056.
DOI: https://doi.org/10.1158/1538-7445.AM2019-LB-056
Published: 01 July 2019
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Journal Articles

Abstract 3171: Vangl2 regulates cancer stem cell self-renewal and growth in rhabdomyosarcoma

Madeline Hayes, Karin McCarthy, Alexander Jin, Sowmya Iyer, Sara Garcia, Mariana L. Oliveira, Sivasish Sindiri, Berkley Gryder, Zainab Motala, G Petur Nielsen, Jean-Paul Borg, Matt van de Rijn, David Malkin, Javed Khan, Myron Ignatius, David M. Langenau
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3171.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3171
Published: 01 July 2018
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Journal Articles

Abstract 5867: Identification of novel inhibitors of the PAX3-FOXO1 oncogenic driver in rhabdomyosarcoma

Robert G. Hawley, Girma M. Woldemichael, Berkley E. Gryder, Young Song, Sivasish Sindiri, Vineela Gangalapudi, Jun S. Wei, James B. McMahon, Jack F. Shern, Javed Khan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5867.
DOI: https://doi.org/10.1158/1538-7445.AM2018-5867
Published: 01 July 2018
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Journal Articles

Abstract 3877: Relationship of DNA methylation to mutational changes and transcriptional organization in fusion-positive and fusion-negative rhabdomyosarcoma tumors

Wenyue Sun, Bishwanath Chatterjee, Jack F. Shern, Sivasish Sindiri, Yonghong Wang, Holly S. Stevenson, Daniel C. Edelman, Paul S. Meltzer, Javed Khan, Frederic G. Barr
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3877.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3877
Published: 01 July 2017
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Journal Articles

Abstract 1744: RNAseq identified immune signatures associated with adverse outcome in high-risk neuroblastoma

Jun S. Wei, Shile Zhang, Igor Kuznetsov, Young K. Song, Shahab Asgharzadeh, Sivasish Sindiri, Xinyu Wen, Rajesh Patidar, Jaime M. Guidry Auvil, Daniela S. Gerhard, Robert Seeger, John M. Maris, Javed Khan
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 1744.
DOI: https://doi.org/10.1158/1538-7445.AM2017-1744
Published: 01 July 2017
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Journal Articles

Abstract 2591: A guide to filtering TARGET Complete Genomics germline variants

James P. Evans, Rajesh Patidar, Zalman Vaksman, Sivasish Sindiri, Douglas R. Stewart, Javed Khan, Jun S. Wei, Sharon J. Diskin
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2591.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2591
Published: 01 July 2017
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Journal Articles

Abstract 3003: Exome analysis of known hereditary cancer genes in 122 children with rhabdomyosarcoma

Talia Wegman-Ostrosky, Rajesh Patidar, Sivasish Sindiri, Jack Shern, Douglas S. Hawkins, Daniel Catchpoole, Jun S. Wei, Stephen Skapek, Javed Khan, Douglas R. Stewart
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3003.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3003
Published: 01 July 2017
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Journal Articles

Abstract 126: The transcriptome landscape of high-risk neuroblastoma

Jun S. Wei, Shile Zhang, Young K. Song, Shahab Asgharzadeh, Sivasish Sindiri, Xinyu Wen, Rajesh Patidar, Jaime M. Guidry Auvil, Daniela S. Gerhard, Robert Seeger, John M. Maris, Javed Khan
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 126.
DOI: https://doi.org/10.1158/1538-7445.AM2016-126
Published: 15 July 2016
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Journal Articles

Abstract PR16: Targeting the chromatin architecture established by PAX3-FOXO1 in rhabdomyosarcoma

Berkley E. Gryder, Marielle E. Yohe, Jack Shern, Hsien-Chao Chou, Young Song, Rajesh Patidar, Sam Li, Sivasish Sindiri, Abigail Cleveland, Hongling Liao, Xinyu Wen, Xiaohu Zhang, Lesley Mathews-Griner, Rajarshi Guha, Paul Shinn, Marc Ferrer, Scott Martin, Madhu Lal, Craig Thomas, Javed Khan
Journal: Cancer Research
Cancer Res (2016) 76 (5_Supplement): PR16.
DOI: https://doi.org/10.1158/1538-7445.PEDCA15-PR16
Published: 04 April 2016
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Journal Articles

Abstract A25: Reprogramming RAS-driven rhabdomyosarcoma via MEK inhibition

Marielle E. Yohe, Berkley E. Gryder, Jack F. Shern, Young K. Song, Hongling Liao, Hsein-Chao Chou, Sivasish Sindiri, Arnulfo Mendoza, Xiaohu Zhang, Rajarashi Guha, Diana C. Haines, James P. Madigan, Jun S. Wei, Marc Ferrer, Craig J. Thomas, Javed Khan
Journal: Cancer Research
Cancer Res (2016) 76 (5_Supplement): A25.
DOI: https://doi.org/10.1158/1538-7445.PEDCA15-A25
Published: 04 April 2016
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Journal Articles

Abstract 1077: Use of the SVClassify algorithm to classify pediatric solid tumor translocation variant calls as likely true or false positives

Jo Lynne Harenza, Hemang M. Parikh, Jun S. Wei, Xinyu Wen, Sivasish Sindiri, Rajesh Patidar, Marc Salit, Paul S. Meltzer, Javed Khan, Justin Zook
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 1077.
DOI: https://doi.org/10.1158/1538-7445.AM2015-1077
Published: 01 August 2015
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Journal Articles

Abstract 3218: Transcriptome characterization by RNA sequencing identifies molecular and clinical subgroups in high risk neuroblastoma

Shile Zhang, Jun S. Wei, Rajesh Patidar, Young K. Song, Sivasish Sindiri, Xinyu Wen, Shahab Asgharzadeh, Robert C. Seeger, John M. Maris, Jamie M. Guidry Auvil, Daniela S. Gerhard, Javed Khan
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 3218.
DOI: https://doi.org/10.1158/1538-7445.AM2015-3218
Published: 01 August 2015
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Journal Articles

Abstract 3882: Clinical exome and transcriptome sequencing for identification of actionable cancer targets: A pilot study for children and young adults with relapsed or refractory solid tumors

Wen-I Chang, Andrew S. Brohl, Rajesh Patidar, Jack F. Shern, Jun S. Wei, Young K. Song, Hongling Liao, Jimmy Lin, Sivasish Sindiri, Li Chen, Berkley Gryder, Marielle E. Yohe, Shile Zhang, Melinda S. Merchant, Brigitte C. Widemann, Javed Khan
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 3882.
DOI: https://doi.org/10.1158/1538-7445.AM2015-3882
Published: 01 August 2015
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