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Simone Zaccaria
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Journal Articles

Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma

Michael D. Kinnaman, Simone Zaccaria, Alvin Makohon-Moore, Brian Arnold, Max F. Levine, Gunes Gundem, Juan E. Arango Ossa, Dominik Glodzik, M. Irene Rodríguez-Sánchez, Nancy Bouvier, Shanita Li, Emily Stockfisch, Marisa Dunigan, Cassidy Cobbs, Umesh K. Bhanot, Daoqi You, Katelyn Mullen, Jerry P. Melchor, Michael V. Ortiz, Tara J. O'Donohue, Emily K. Slotkin, Leonard H. Wexler, Filemon S. Dela Cruz, Meera R. Hameed, Julia L. Glade Bender, William D. Tap, Paul A. Meyers, Elli Papaemmanuil, Andrew L. Kung, Christine A. Iacobuzio-Donahue
Journal: Cancer Research
Cancer Res (2023) 83 (22): 3796–3812.
https://doi.org/10.1158/0008-5472.CAN-23-0385
Published: 15 November 2023
View article titled, Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma
Open the PDF for Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma in another window
Includes: Supplementary data
Journal Articles

Abstract 3556: Assessing patterns of genomic instability in recurrent osteosarcoma

Michael David Kinnaman, Simone Zaccaria, Alvin Makohon-Moore, Gunes Gundem, Juan E. Arango Ossa, Filemon S. Dela Cruz, Paul A. Meyers, Meera Hameed, William D. Tap, Julia Lynne Glade Bender, Elli Papaemmanuil, Andrew Kung, Christine Iacobuzio Donahue
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3556.
https://doi.org/10.1158/1538-7445.AM2023-3556
Published: 04 April 2023
View article titled, Abstract 3556: Assessing patterns of genomic instability in recurrent osteosarcoma
Journal Articles

Abstract 2037: Tracking the emergence of immunotherapy resistance in lung cancer metastases

Sonya Hessey, Ariana Huebner, Oriol Pich, Abi Bunkum, Wing Liu, David A. Moore, Cristina Naceur-Lombardelli, Selvaraju Veeriah, Sophie Ward, Roberto Salgado, Nicholas McGranahan, Simone Zaccaria, Charles Swanton, Mariam Jamal-Hanjani
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2037.
https://doi.org/10.1158/1538-7445.AM2023-2037
Published: 04 April 2023
View article titled, Abstract 2037: Tracking the emergence of immunotherapy resistance in lung cancer metastases
Journal Articles

Abstract 4277: Measuring proliferation rates of distinct tumour clones using single-cell DNA sequencing

Olivia Lucas, Sophie Ward, Rija Zaidi, Mark Hill, Emilia Lim, Haoran Zhai, Abigail Bunkum, Sonya Hessey, Michelle Dietzen, Andrew Rowan, Cristina Naceur-Lombardelli, Nnenna Kanu, Mariam Jamal-Hanjani, Charles Swanton, Simone Zaccaria
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4277.
https://doi.org/10.1158/1538-7445.AM2023-4277
Published: 04 April 2023
View article titled, Abstract 4277: Measuring proliferation rates of distinct tumour clones using single-cell DNA sequencing
Journal Articles

Abstract 1394: Pervasive allele specific transcriptional repression of the class I and II HLA genes in TRACERx non-small cell lung cancer

Clare Puttick, Oriol Pich, Michelle Leung, Carlos Martinez-Ruiz, Robert Bentham, Rachel Rosenthal, Sonya Hessey, James R. Black, Emilia L. Lim, Katey Enfield, Emma Colliver, Krijn Dijkstra, Crispin T. Hiley, Takahiro Karasaki, Ariana Huebner, Maise Al Bakir, Thomas B. Watkins, Alexander M. Frankell, Simone Zaccaria, Mariam Jamal-Hanjani, Nicholas McGranahan, Charles Swanton
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1394.
https://doi.org/10.1158/1538-7445.AM2022-1394
Published: 15 June 2022
View article titled, Abstract 1394: Pervasive allele specific transcriptional repression of the class I and II HLA genes in TRACERx non-small cell lung cancer
Journal Articles

Abstract 801: Surprisingly conserved copy numbers from cell to cell within structurally complex tumors challenge the unstable genome hypothesis

Sanjana Rajan, Simone Zaccaria, Matthew Cannon, Maren Cam, Amy Gross, Benjamin Raphael, Ryan D. Roberts
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 801.
https://doi.org/10.1158/1538-7445.AM2022-801
Published: 15 June 2022
View article titled, Abstract 801: Surprisingly conserved copy numbers from cell to cell within structurally complex tumors challenge the unstable genome hypothesis
Journal Articles

Abstract 3620: Investigating the role of altered replication timing during tumor evolution in lung and breast cancer

Michelle Dietzen, Haoran Zhai, Olivia Lucas, Sophia Ward, Yanping Guo, Wei Ting-Lu, Oriol Pich, Simone Zaccaria, Charles Swanton, Nicholas McGranahan, Nnennaya Kanu
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3620.
https://doi.org/10.1158/1538-7445.AM2022-3620
Published: 15 June 2022
View article titled, Abstract 3620: Investigating the role of altered replication timing during tumor evolution in lung and breast cancer
Journal Articles

Abstract 1606: Chromosomal instability drives spatial and temporal phenotypic diversity in Schwann cancer cells

Haixi Yan, Jonas Demeulemeester, Annelien Verfaillie, Cristina Cotobal Martin, Tom Kaufmann, Roland Schwarz, Thierry Voet, Simone Zaccaria, Adrienne Flanagan, Maxime Tarabichi, Peter Van Loo
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1606.
https://doi.org/10.1158/1538-7445.AM2022-1606
Published: 15 June 2022
View article titled, Abstract 1606: Chromosomal instability drives spatial and temporal phenotypic diversity in Schwann cancer cells
Journal Articles

Abstract 1699: SignaTree: A tool to identify evolutionary trajectories of the activity of mutational processes in TRACERx

Michelle Dietzen, Oriol Pich, TRACERx Consortium, Simone Zaccaria, Charles Swanton, Nicholas McGranahan
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1699.
https://doi.org/10.1158/1538-7445.AM2022-1699
Published: 15 June 2022
View article titled, Abstract 1699: SignaTree: A tool to identify evolutionary trajectories of the activity of mutational processes in TRACERx
Journal Articles

Abstract 6091: Evolutionary characterisation of lung adenocarcinoma pathological subtypes in TRACERx

Takahiro Karasaki, David A. Moore, Selvaraju Veeriah, Cristina Naceur-Lombardelli, Antonia Toncheva, Maise Al Bakir, Thomas B. Watkins, Oriol Pich, Alexander M. Frankell, Emilia Lim, Mark S. Hill, Kristiana Grigoriadis, Carlos Martinez-Ruiz, James R. Black, Clare Puttick, Dhruva Biswas, Ariana Huebner, Michelle Dietzen, Emma Colliver, Claudia Lee, Nnenna Kanu, Sadegh Mohammad Saghafinia, Francisco Gimeno Valiente, Christopher Abbosh, Crispin T. Hiley, Simone Zaccaria, Nicolai J. Birkbak, Allan Hackshaw, TRACERx Consortium, Teresa Marafioti, Roberto Salgado, John Le Quesne, Andrew G. Nicholson, Nicholas McGranahan, Charles Swanton, Mariam Jamal-Hanjani
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 6091.
https://doi.org/10.1158/1538-7445.AM2022-6091
Published: 15 June 2022
View article titled, Abstract 6091: Evolutionary characterisation of lung adenocarcinoma pathological subtypes in TRACERx
Journal Articles

Abstract 6217: TP53 loss with whole genome doubling mediates heterogeneous intra-patient therapy response in EGFR-driven lung adenocarcinoma: A TRACERx study

Sebastijan Hobor, Maise Al Bakir, Marcin Skrzypski, Alexander M. Frankell, Bjorn Bakker, Thomas B. Watkins, Aleksandra Markovets, Jonathan R. Dry, Andrew P. Brown, Jasper van der Aart, Dahmane Oukrif, Marco Novelli, Matthew J. Renshaw, William Hill, Hilda van den Bos, Diana C. Spierings, Juliann Chmielecki, Carl Barrett, Kevin Litchfield, Elza de Bruin, Floris Foijer, Karen H. Vousden, TRACERx consortium, Robert E. Hynds, Crispin T. Hiley, Nnennaya Kanu, Simone Zaccaria, Eva C. Gronroos, Charles Swanton
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 6217.
https://doi.org/10.1158/1538-7445.AM2022-6217
Published: 15 June 2022
View article titled, Abstract 6217: TP53 loss with whole genome doubling mediates heterogeneous intra-patient therapy response in EGFR-driven lung adenocarcinoma: A TRACERx study
Journal Articles

Abstract 3792: TRACERx: Mapping the evolution of metastases in non-small cell lung cancer

Ariana Huebner, Maise Al Bakir, Carlos Martinez Ruiz, Kristiana Grigoriadis, Thomas B. Watkins, Oriol Pich, David A. Moore, Selvaraju Veeriah, Sophia Ward, Joanne Laycock, Diana Johnson, Andrew Rowan, Maryam Razaq, Mita Akther, Cristina Naceur-Lombardelli, Sonya Hessey, Michelle Dietzen, Emma Colliver, Alexander M. Frankell, Emilia Lim, Takahiro Karasaki, Christopher Abbosh, Crispin T. Hiley, Mark S. Hill, Daniel Cook, Gareth Wilson, TRACERx consortium, Allan Hackshaw, Nicolai J. Birkbak, Simone Zaccaria, Mariam Jamal-Hanjani, Charles Swanton, Nicholas McGranahan
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3792.
https://doi.org/10.1158/1538-7445.AM2022-3792
Published: 15 June 2022
View article titled, Abstract 3792: TRACERx: Mapping the evolution of metastases in non-small cell lung cancer
Journal Articles

Abstract 3123: Lung cancer evolutionary trajectories in PEACE

Ariana Huebner, Sonya Hessey, Cristina Naceur-Lombardelli, Mita Akther, Selvaraju Veeriah, Maise Al Bakir, David Moore, Simone Zaccaria, Nicholas McGranahan, Charles Swanton, Mariam Jamal-Hanjani, TRACERx and PEACE consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 3123.
https://doi.org/10.1158/1538-7445.AM2021-3123
Published: 01 July 2021
View article titled, Abstract 3123: Lung cancer evolutionary trajectories in PEACE