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Sarah J. Wheelan
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Journal Articles

Abstract 2198: Allelic phasing of genomic alterations through linked read whole genome sequencing in human prostate cancer cell lines

Free
Minh-Tam Pham, Harshath Gupta, Anuj Gupta, Ajay Vaghasia, Alyza M. Skaist, McKinzie A. Garrison, Roshan Chikamarne, Sarah J. Wheelan, William G. Nelson, Srinivasan Yegnasubramanian
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2198.
https://doi.org/10.1158/1538-7445.AM2021-2198
Published: 01 July 2021
View articletitled, Abstract 2198: Allelic phasing of genomic alterations through linked read whole genome sequencing in human prostate cancer cell lines
Journal Articles

Abstract 157: Pervasive promoter hypermethylation of silenced TERT alleles in human cancers

Free
Mindy K. Graham, David Esopi, Jacqueline A. Brosnan-Cashman, Anuj Gupta, Angelo De Marzo, William G. Nelson, Christopher M. Heaphy, Alan K. Meeker, Sarah J. Wheelan, Srinivasan Yegnasubramanian
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 157.
https://doi.org/10.1158/1538-7445.AM2020-157
Published: 15 August 2020
View articletitled, Abstract 157: Pervasive promoter hypermethylation of silenced TERT alleles in human cancers
Journal Articles

Abstract 129: Biobanking and feasibility considerations for prostate cancer gastrointestinal microbiome studies

Free
Sarah E. Ernst, Mark C. Markowski, Anuj Gupta, Sarah J. Wheelan, H. Ballentine Carter, Alan W. Partin, Cynthia L. Sears, Karen S. Sfanos
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 129.
https://doi.org/10.1158/1538-7445.AM2018-129
Published: 01 July 2018
View articletitled, Abstract 129: Biobanking and feasibility considerations for prostate cancer gastrointestinal microbiome studies
Journal Articles

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Free
Dylan Z. Kelley, Emily L. Flam, Evgeny Izumchenko, Ludmila V. Danilova, Hildegard A. Wulf, Theresa Guo, Dzov A. Singman, Bahman Afsari, Alyza M. Skaist, Michael Considine, Jane A. Welch, Elena Stavrovskaya, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah J. Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (23): 6538–6550.
https://doi.org/10.1158/0008-5472.CAN-17-0833
Published: 30 November 2017
View articletitled, Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Open the PDF for Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks in another window
Includes: Supplementary data
Journal Articles

A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers

Free
Theresa Guo, Akihiro Sakai, Bahman Afsari, Michael Considine, Ludmila Danilova, Alexander V. Favorov, Srinivasan Yegnasubramanian, Dylan Z. Kelley, Emily Flam, Patrick K. Ha, Zubair Khan, Sarah J. Wheelan, J. Silvio Gutkind, Elana J. Fertig, Daria A. Gaykalova, Joseph Califano
Journal: Cancer Research
Cancer Res (2017) 77 (19): 5248–5258.
https://doi.org/10.1158/0008-5472.CAN-16-3106
Published: 01 October 2017
View articletitled, A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers
Open the PDF for A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers in another window
Includes: Supplementary data
Journal Articles

Abstract LB-278: Whole exome sequencing of metaplastic breast carcinoma indicates monoclonality with associated ductal carcinoma component

Free
Bracha E. Avigdor, Katie Beierl, Christopher D. Gocke, Daniel J. Zabransky, Karen Cravero, Kelly Kyker-Snowmana, Berry Button, David Chu, Sarah Croessmann, Rory L. Cochran, Roisin M. Connolly, Ben H. Park, Ashley Cimino-Mathews, Sarah J. Wheelan
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-278.
https://doi.org/10.1158/1538-7445.AM2017-LB-278
Published: 01 July 2017
View articletitled, Abstract LB-278: Whole exome sequencing of metaplastic breast carcinoma indicates monoclonality with associated ductal carcinoma component
Journal Articles

Abstract LB-160: Human telomerase RNA component (hTR/TERC) is consistently overexpressed in prostate cancer, required for cell proliferation and is positively regulated by MYC

Free
Javier A. Baena Del Valle, Qizhi Zheng, Michael Rubenstein, Alan K. Meeker, Christopher M. Heaphy, Gretchen Hubbard, Charles J. Bieberich, Srinivasan Yegnasubramanian, David Esopi, Sarah J. Wheelan, Angelo M. De Marzo
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): LB-160.
https://doi.org/10.1158/1538-7445.AM2016-LB-160
Published: 15 July 2016
View articletitled, Abstract LB-160: Human telomerase RNA component (hTR/TERC) is consistently overexpressed in prostate cancer, required for cell proliferation and is positively regulated by MYC
Journal Articles

Abstract 4270: NGS based microhaplotype counting for ultrasensitive human DNA detection

Free
Marija Debeljak, Donald N. Freed, Jane A. Welch, Lisa Haley, Katie Beierl, Brian S. Iglehart, Aparna Pallavajjala, Christopher D. Gocke, Mary S. Leffell, Ming-Tseh Lin, Laura D. Wood, Jonathan Pevsner, Sarah J. Wheelan, James R. Eshleman
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 4270.
https://doi.org/10.1158/1538-7445.AM2015-4270
Published: 01 August 2015
View articletitled, Abstract 4270: NGS based microhaplotype counting for ultrasensitive human DNA detection