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Abstract 1999: Defining the distinct molecular landscapes of primary tumors and metastases in Merkel cell carcinoma

Yajie Yang, Sami Kilpinen, Harri Sihto, Libuse Janská, Xiaohao Wang, Catharina Larsson, Weng-Onn Lui

Cancer Res (2025) 85 (8_Supplement_1): 1999.

https://doi.org/10.1158/1538-7445.AM2025-1999

Published: 21 April 2025

View article titled, Abstract 1999: Defining the distinct molecular landscapes of primary tumors and metastases in Merkel cell carcinoma

Journal Articles

Abstract 2984: A comprehensive bioinformatic analysis of the representativity of 460 cancer cell lines as model systems for 88 different clinical cancer types

Kalle Ojala, Sami Kilpinen, Olli Kallioniemi

Cancer Res (2012) 72 (8_Supplement): 2984.

https://doi.org/10.1158/1538-7445.AM2012-2984

Published: 15 April 2012

View article titled, Abstract 2984: A comprehensive bioinformatic analysis of the representativity of 460 cancer cell lines as model systems for 88 different clinical cancer types

Journal Articles

Abstract 4836: In vitro drug sensitivity testing along with full genome and transcriptome sequencing and phosphoproteomics: Comprehensive “next-generation” molecular oncology portrait of a sarcoma for facilitating treatment decisions

Cancer Res (2011) 71 (8_Supplement): 4836.

https://doi.org/10.1158/1538-7445.AM2011-4836

Published: 15 April 2011

View article titled, Abstract 4836: In vitro drug sensitivity testing along with full genome and transcriptome sequencing and phosphoproteomics: Comprehensive “next-generation” molecular oncology portrait of a sarcoma for facilitating treatment decisions

Journal Articles

Abstract 52: A new method to interpret gene expression microarray data for individual tumors by profile alignment against a reference dataset of 10,000 samples

Sami Kilpinen, Kalle Ojala, Olli Kallioniemi

Cancer Res (2011) 71 (8_Supplement): 52.

https://doi.org/10.1158/1538-7445.AM2011-52

Published: 15 April 2011

View article titled, Abstract 52: A new method to interpret gene expression microarray data for individual tumors by profile alignment against a reference dataset of 10,000 samples

Journal Articles

Fibroblast Growth Factor Receptor 4 Regulates Tumor Invasion by Coupling Fibroblast Growth Factor Signaling to Extracellular Matrix Degradation

Nami Sugiyama, Markku Varjosalo, Pipsa Meller, Jouko Lohi, Marko Hyytiäinen, Sami Kilpinen, Olli Kallioniemi, Signe Ingvarsen, Lars H. Engelholm, Jussi Taipale, Kari Alitalo, Jorma Keski-Oja, Kaisa Lehti

Cancer Res (2010) 70 (20): 7851–7861.

https://doi.org/10.1158/0008-5472.CAN-10-1223

Published: 13 October 2010

View article titled, Fibroblast Growth Factor Receptor 4 Regulates Tumor Invasion by Coupling Fibroblast Growth Factor Signaling to Extracellular Matrix Degradation

Includes: Supplementary data

Journal Articles

Abstract #2434: Analysis of mRNA expression profiles of 4332 drug targets across 68 major cancer types: a new bioinformatic method to predict dependency of tumors on drug targets

John Mpindi, Henri Sara, Sami Kilpinen, Tommi Pisto, Elmar Bucher, Kalle Ojala, Kristiina Iljin, Saija Haapa-Paananen, Joensuu Heikki, Mathias Nees, Olli Kallioniemi

Cancer Res (2009) 69 (9_Supplement): 2434.

Published: 01 May 2009

View article titled, Abstract #2434: Analysis of mRNA expression profiles of 4332 drug targets across 68 major cancer types: a new bioinformatic method to predict dependency of tumors on drug targets

Journal Articles

Rapid bioinformatic analysis of gene expression and predicted functions in over 14,000 healthy and cancer tissues: discovery of novel cancer associated kinases

Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Rolf Skotheim, Paula Vainio, Kristine Kleivi, Kimmo Jaakkola, Mari Bjorkman, Matti Saarela, Henrik Edgren, Maija Wolf, Jaakko Astola, Sampsa Hautaniemi, Matthias Nees, Olli Kallioniemi

Cancer Res (2008) 68 (9_Supplement): 792.

Published: 01 May 2008

View article titled, Rapid bioinformatic analysis of gene expression and predicted functions in over 14,000 healthy and cancer tissues: discovery of novel cancer associated kinases

Journal Articles

High-throughput RNAi and drug screening for the identification and inhibition of oncogenic processes activated by the TMPRSS2-ERG gene fusions in prostate cancer

Kristiina Iljin, Paula Vainio, Mari Bjorkman, Sami Kilpinen, Henri Sara, Maija Wolf, Henrik Edgren, Pekka Kohonen, John Mpindi, Santosh Gupta, Pasi Halonen, Tao He, Merja Perala, Matthias Nees, Olli Kallioniemi

Cancer Res (2008) 68 (9_Supplement): 4129.

Published: 01 May 2008

View article titled, High-throughput RNAi and drug screening for the identification and inhibition of oncogenic processes activated by the TMPRSS2-ERG gene fusions in prostate cancer

Journal Articles

Histone deacetylase inhibition as a potential therapeutic in ERG-positive prostate cancer

Mari Peltola, Kristiina Iljin, Maija Wolf, Henrik Edgren, Santosh Gupta, Sami Kilpinen, Matthias Nees, Olli Kallioniemi

Cancer Res (2007) 67 (9_Supplement): 685.

Published: 01 May 2007

View article titled, Histone deacetylase inhibition as a potential therapeutic in ERG-positive prostate cancer

Journal Articles

TMPRSS2 Fusions with Oncogenic ETS Factors in Prostate Cancer Involve Unbalanced Genomic Rearrangements and Are Associated with HDAC1 and Epigenetic Reprogramming

Kristiina Iljin, Maija Wolf, Henrik Edgren, Santosh Gupta, Sami Kilpinen, Rolf I. Skotheim, Mari Peltola, Frank Smit, Gerald Verhaegh, Jack Schalken, Matthias Nees, Olli Kallioniemi

Cancer Res (2006) 66 (21): 10242–10246.

https://doi.org/10.1158/0008-5472.CAN-06-1986

Published: 01 November 2006

View article titled, TMPRSS2 Fusions with Oncogenic ETS Factors in Prostate Cancer Involve Unbalanced Genomic Rearrangements and Are Associated with HDAC1 and Epigenetic Reprogramming

Includes: Supplementary data

Journal Articles

NMD microarray analysis of mutated genes in breast cancer

Aslaug Aa Muggerud, Maija Wolf, Henrik Edgren, Sami Kilpinen, Therese Sørlie, Olli Kallioniemi

Cancer Res (2006) 66 (8_Supplement): 768.

Published: 15 April 2006

View article titled, NMD microarray analysis of mutated genes in breast cancer

Journal Articles

A novel array-based “DNA/RNA outlier analysis” distinguishes key pathogenetic genes and novel therapeutic targets in breast cancer.

Henrik Edgren, Maija Wolf, Rolf Skotheim, Sami Kilpinen, Reija Autio, Aslaug Muggerud, Therese Sörlie, Kristiina Iljin, Outi Monni, Saija Haapa-Paananen, Merja Perälä, Olli Kallioniemi

Cancer Res (2006) 66 (8_Supplement): 1339.

Published: 15 April 2006

View article titled, A novel array-based “DNA/RNA outlier analysis” distinguishes key pathogenetic genes and novel therapeutic targets in breast cancer.

Journal Articles

Integrated DNA/RNA microarray profiling of hormone-refractory clinical prostate cancers and metastases indicates deregulation of several pathways, including androgen/AR, Hedgehog, MAPK and neuroactive ligand/receptor signalling

Maija K. Wolf, Henrik Edgren, Ian Mills, Annaïck Carles, Olivier Poch, Sami Kilpinen, Mari Peltola, Reija Autio, David Neal, Bohdan Wasylyk, Jack Schalken, Olli Kallioniemi

Cancer Res (2006) 66 (8_Supplement): 36.

Published: 15 April 2006

View article titled, Integrated DNA/RNA microarray profiling of hormone-refractory clinical prostate cancers and metastases indicates deregulation of several pathways, including androgen/AR, Hedgehog, MAPK and neuroactive ligand/receptor signalling

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Abstract 1999: Defining the distinct molecular landscapes of primary tumors and metastases in Merkel cell carcinoma

Abstract 2984: A comprehensive bioinformatic analysis of the representativity of 460 cancer cell lines as model systems for 88 different clinical cancer types

Abstract 4836: In vitro drug sensitivity testing along with full genome and transcriptome sequencing and phosphoproteomics: Comprehensive “next-generation” molecular oncology portrait of a sarcoma for facilitating treatment decisions

Abstract 52: A new method to interpret gene expression microarray data for individual tumors by profile alignment against a reference dataset of 10,000 samples

Fibroblast Growth Factor Receptor 4 Regulates Tumor Invasion by Coupling Fibroblast Growth Factor Signaling to Extracellular Matrix Degradation

Abstract #2434: Analysis of mRNA expression profiles of 4332 drug targets across 68 major cancer types: a new bioinformatic method to predict dependency of tumors on drug targets

Rapid bioinformatic analysis of gene expression and predicted functions in over 14,000 healthy and cancer tissues: discovery of novel cancer associated kinases

High-throughput RNAi and drug screening for the identification and inhibition of oncogenic processes activated by the TMPRSS2-ERG gene fusions in prostate cancer

Histone deacetylase inhibition as a potential therapeutic in ERG-positive prostate cancer

TMPRSS2 Fusions with Oncogenic ETS Factors in Prostate Cancer Involve Unbalanced Genomic Rearrangements and Are Associated with HDAC1 and Epigenetic Reprogramming

NMD microarray analysis of mutated genes in breast cancer

A novel array-based “DNA/RNA outlier analysis” distinguishes key pathogenetic genes and novel therapeutic targets in breast cancer.

Integrated DNA/RNA microarray profiling of hormone-refractory clinical prostate cancers and metastases indicates deregulation of several pathways, including androgen/AR, Hedgehog, MAPK and neuroactive ligand/receptor signalling

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