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Journal Articles

Abstract 4552: ssCOPA: a novel method with improved sensitivity to assess statistical significance for cancer outlier profile analysis of gene expression

Hong Gao, Sam Ng, Hinco J. Gierman
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 4552.
DOI: https://doi.org/10.1158/1538-7445.AM2017-4552
Published: 01 July 2017
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Journal Articles

Abstract PR10: Multiple Pathway Learning accurately predicts gene essentiality in the Cancer Cell Line Encyclopedia

Vladislav Uzunangelov, Evan Paull, Sahil Chopra, Daniel Carlin, Adrian Bivol, Kyle Ellrott, Kiley Graim, Yulia Newton, Sam Ng, Artem Sokolov, Joshua Stuart
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_1): PR10.
DOI: https://doi.org/10.1158/1538-7445.TRANSCAGEN-PR10
Published: 15 November 2015
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Journal Articles

Abstract A2-52: Pan-cancer analysis reveals distinct effects of receptor tyrosine kinase mutations on downstream pathway activities

Olena Morozova, Sam Ng, Arjun Rao, Josh Stuart, David Haussler, Sofie Salama
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_1): A2-52.
DOI: https://doi.org/10.1158/1538-7445.TRANSCAGEN-A2-52
Published: 15 November 2015
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Journal Articles

Abstract B1-38: PARADIGM-SHIFT: Predicts the functional impact of ‘driver modules’ in multiple cancers using pathway impact analysis

Sam Ng, Christopher Benz, David Haussler, Joshua M. Stuart
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_2): B1-38.
DOI: https://doi.org/10.1158/1538-7445.COMPSYSBIO-B1-38
Published: 15 November 2015
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Journal Articles

Abstract PR02: Multiple Pathway Learning accurately predicts gene essentiality in the Cancer Cell Line Encyclopedia

Vladislav Uzunangelov, Evan Paull, Sahil Chopra, Daniel Carlin, Adrian Bivol, Kyle Ellrott, Kiley Graim, Yulia Newton, Sam Ng, Artem Sokolov, Joshua Stuart
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_2): PR02.
DOI: https://doi.org/10.1158/1538-7445.COMPSYSBIO-PR02
Published: 15 November 2015
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Journal Articles

Abstract 4165: Differential pathway activation associated with domain-specific PIK3CA mutations

Christina Yau, Stephen Benz, Charles Vaske, Sam Ng, Josh Stuart, Christopher C. Benz
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 4165.
DOI: https://doi.org/10.1158/1538-7445.AM2014-4165
Published: 01 October 2014
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Journal Articles

Abstract 5238: Acquired therapeutic resistance is mediated by deregulation of multiple pathways.

Laura M. Heiser, Chad A. Shaw, Nicholas J. Wang, Catie Grasso, Pavana Anur, Sam Ng, Theodore Goldstein, Paul T. Spellman, Joshua Stuart, Kent Osborne, Joe Gray, Rachel Schiff
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 5238.
DOI: https://doi.org/10.1158/1538-7445.AM2013-5238
Published: 15 April 2013
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Journal Articles

Abstract 2985: Predicting the impact of mutations in cancer using an integrated pathway approach

Sam Ng, Janita Thusberg, Stephen Benz, Charles Vaske, Kyle Ellrott, Jing Zhu, Christina Yau, Eric Collisson, Sean Mooney, Christopher Benz, David Haussler, Joshua Stuart
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 2985.
DOI: https://doi.org/10.1158/1538-7445.AM2012-2985
Published: 15 April 2012
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Journal Articles

Abstract 4905: Patient-specific pathway analysis using PARADIGM identifies key activities in multiple cancers

Stephen C. Benz, Charles Vaske, Sam Ng, John Zachary Sanborn, Jing Zhu, David Haussler, Joshua Stuart
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 4905.
DOI: https://doi.org/10.1158/1538-7445.AM2011-4905
Published: 15 April 2011
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Journal Articles

Abstract 49: Constructing pathway based predictors of cancer clinical outcome

Sam Ng, Charlie Vaske, Steve Benz, James Durbin, Chris Szeto, Laura Heiser, Nicholas Wang, Jim Korkola, Nora Bayani, Paul Spellman, Joe W. Gray, David Haussler, Joshua Stuart
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 49.
DOI: https://doi.org/10.1158/1538-7445.AM2011-49
Published: 15 April 2011
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