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Journal Articles

Abstract 4306: Label-free melanoma phenotype classification using AI-based morphological profiling

Evelyn Lattmann, Andreja Jovic, Julie Kim, Aizhan Tastanova, Tiffine Pham, Christian Corona, Kiran Saini, Zhouyang Lian, Senzeyu Zhang, Ryan Carelli, Kevin B. Jacobs, Manisha Ray, Vivian Lu, Stephane C. Boutet, Mahyar Salek, Maddison Masaeli, Mitchell P. Levesque

Cancer Res (2024) 84 (6_Supplement): 4306.

https://doi.org/10.1158/1538-7445.AM2024-4306

Published: 22 March 2024

View articletitled, Abstract 4306: Label-free melanoma phenotype classification using AI-based morphological profiling

Journal Articles

Abstract 1073: AI-assisted high-dimensional cytological single cell analysis distinguishes normal and malignant urine samples using cell morphology images with high accuracy at the single cell level

Thierry P. van den Bosch, Geert J.L.H. van Leenders, Siamala Sinnadurai, Zhouyang Lian, Ryan Carelli, Matthew Nakaki, Vivian Lu, Manisha Ray, Janifer Cruz, Kelly R. Miller, Mahyar Salek, Maddison Masaeli, Peter J. van der Spek

Cancer Res (2024) 84 (6_Supplement): 1073.

https://doi.org/10.1158/1538-7445.AM2024-1073

Published: 22 March 2024

View articletitled, Abstract 1073: AI-assisted high-dimensional cytological single cell analysis distinguishes normal and malignant urine samples using cell morphology images with high accuracy at the single cell level

Journal Articles

Abstract 4987: TREM2 is a radiation-induced target for immunomodulation of tumor-associated macrophages in the prostate cancer tumor microenvironment

Janny A. Villa-Pulgarin, Un In Chan, Francesca Khani, Fabio Socciarelli, Jiansheng Wu, Ryan Carelli, Jeffrey Kraynak, Silvia C. Formenti, Luigi Marchionni, Massimo Loda, Himanshu Nagar, Ariel E. Marciscano, Christopher E. Barbieri

Cancer Res (2024) 84 (6_Supplement): 4987.

https://doi.org/10.1158/1538-7445.AM2024-4987

Published: 22 March 2024

View articletitled, Abstract 4987: TREM2 is a radiation-induced target for immunomodulation of tumor-associated macrophages in the prostate cancer tumor microenvironment

Journal Articles

Abstract 4877: Morphological detection of chemotherapy resistance in cancer cell lines using AI-based analysis

Andreja Jovic, Manisha Ray, Ryan Carelli, Kiran Saini, Tiffine Pham, Christian Corona, Stephane C. Boutet, Chassidy Johnson, Mahyar Salek, Maddison Masaeli, Matt Barnes, Cyril Y. Ramathal

Cancer Res (2024) 84 (6_Supplement): 4877.

https://doi.org/10.1158/1538-7445.AM2024-4877

Published: 22 March 2024

View articletitled, Abstract 4877: Morphological detection of chemotherapy resistance in cancer cell lines using AI-based analysis

Journal Articles

Abstract 3523: Self-supervised foundation model captures high-dimensional morphology data from single cell brightfield images

Kiran Saini, Senzeyu Zhang, Ryan Carelli, Kevin B. Jacobs, Amy Wong-Thai, Cris Luengo, Vivian Lu, Anastasia Mavropoulos, Andreja Jovic, Jeanette Mei, Thomas Vollbrecht, Stephane C. Boutet, Mahyar Salek, Maddison Masaeli

Cancer Res (2024) 84 (6_Supplement): 3523.

https://doi.org/10.1158/1538-7445.AM2024-3523

Published: 22 March 2024

View articletitled, Abstract 3523: Self-supervised foundation model captures high-dimensional morphology data from single cell brightfield images

Journal Articles

Abstract 6934: Integrating deep learning morphology profiling, cell sorting, and scRNASeq reveals sample diversity and enriched sub-populations

Andreja Jovic, Christian Corona, Kiran Saini, Tiffine Pham, Ryan Carelli, Vivian Lu, Senzeyu Zhang, Stephane C. Boutet, Maddison Masaeli

Cancer Res (2024) 84 (6_Supplement): 6934.

https://doi.org/10.1158/1538-7445.AM2024-6934

Published: 22 March 2024

View articletitled, Abstract 6934: Integrating deep learning morphology profiling, cell sorting, and scRNASeq reveals sample diversity and enriched sub-populations

Journal Articles

Abstract LB170: Artificial intelligence-assisted morphology-based detection and enrichment of malignant effusion tumor cells as a method for molecular profiling

Cancer Res (2023) 83 (8_Supplement): LB170.

https://doi.org/10.1158/1538-7445.AM2023-LB170

Published: 14 April 2023

View articletitled, Abstract LB170: Artificial intelligence-assisted morphology-based detection and enrichment of malignant effusion tumor cells as a method for molecular profiling

Journal Articles

Abstract 5926: High dimensional morphology analysis reveals new insights in melanoma cell heterogeneity

Evelyn Lattmann, Aizhan Tastanova, Andreja Jovic, Kiran Saini, Tiffine Pham, Christian Corona, Jeanette Mei, Michael Phelan, Stephane C. Boutet, Ryan Carelli, Kevin B. Jacobs, Julie Kim, Manisha Ray, Chassidy Johnson, Nianzhen Li, Mahyar Salek, Maddison Masaeli, Mitchell P. Levesque

Cancer Res (2023) 83 (7_Supplement): 5926.

https://doi.org/10.1158/1538-7445.AM2023-5926

Published: 04 April 2023

View articletitled, Abstract 5926: High dimensional morphology analysis reveals new insights in melanoma cell heterogeneity

Journal Articles

Abstract 2392: Multi-dimensional morphology analysis enables identification and label-free enrichment of heterogeneous tumor cell populations

Andreja Jovic, Kiran Saini, Ryan Carelli, Tiffine Pham, Christian Corona, Jeanette Mei, Michael Phelan, Stephane C. Boutet, Kevn Jacobs, Julie Kim, Manisha Ray, Chassidy Johnson, Nianzhen Li, Mahyar Salek, Maddison Masaeli, Matt Barnes, Cyril Ramathal

Cancer Res (2023) 83 (7_Supplement): 2392.

https://doi.org/10.1158/1538-7445.AM2023-2392

Published: 04 April 2023

View articletitled, Abstract 2392: Multi-dimensional morphology analysis enables identification and label-free enrichment of heterogeneous tumor cell populations

Journal Articles

Abstract 5361: Deep learning models capture high dimensional features for cell morphology analysis

Kevin B. Jacobs, Kiran Saini, Nianzhen Li, Senzeyu Zhang, Ryan Carelli, Amy Wong-Thai, Stephane C. Boutet, Anastasia Mavropoulos, Andreja Jovic, Jeanette Mei, Mahyar Salek, Maddison Masaeli

Cancer Res (2023) 83 (7_Supplement): 5361.

https://doi.org/10.1158/1538-7445.AM2023-5361

Published: 04 April 2023

View articletitled, Abstract 5361: Deep learning models capture high dimensional features for cell morphology analysis

Journal Articles

Abstract 5381: A broad-use deep learning model based on multi-dimensional morphology to identify and characterize tumor cell heterogeneity

Stephane C. Boutet, Anastasia Mavropoulos, Andreja Jovic, Jeanette Mei, Nianzhen Li, Kiran Saini, Senzeyu Zhang, Chassidy Johnson, Vivian Lu, Ryan Carelli, Kevin B. Jacobs, Mahyar Salek, Maddison Masaeli

Cancer Res (2023) 83 (7_Supplement): 5381.

https://doi.org/10.1158/1538-7445.AM2023-5381

Published: 04 April 2023

View articletitled, Abstract 5381: A broad-use deep learning model based on multi-dimensional morphology to identify and characterize tumor cell heterogeneity

Journal Articles

Abstract 1343: Mesenchymal cell populations associated with different stages of prostate cancer progression in mice and human

Mohamed Omar, Hubert Pakula, Filippo Pederzoli, Giuseppe N. Fanelli, Tania Panellinni, Ryan Carelli, Silvia Rodrigues, Caroline Fidalgo-Ribeiro, Pier V. Nuzzo, Lucie V. Emmenis, Mohammad Mohammad, Madhavi Jere, Caitlin Unkenholz, David Rickman, Christopher Barbieri, Brian Robinson, Luigi Marchionni, Massimo Loda

Cancer Res (2023) 83 (7_Supplement): 1343.

https://doi.org/10.1158/1538-7445.AM2023-1343

Published: 04 April 2023

View articletitled, Abstract 1343: Mesenchymal cell populations associated with different stages of prostate cancer progression in mice and human

Journal Articles

The Prostate Cancer Androgen Receptor Cistrome in African American Men Associates with Upregulation of Lipid Metabolism and Immune Response

Cancer Res (2022) 82 (16): 2848–2859.

https://doi.org/10.1158/0008-5472.CAN-21-3552

Published: 16 August 2022

View articletitled, The Prostate Cancer Androgen Receptor Cistrome in African American Men Associates with Upregulation of Lipid Metabolism and Immune Response

Includes: Supplementary data

Journal Articles

Abstract 3816: Functional atlas of prostate mesenchyme

Hubert Pakula, Ryan Carelli, Nicolo Fanelli, Madhavi Jere, Caitlin Unkenholz, Mohamed Omar, Caroline Ribeiro- Fidalgo, Filippo Pederzoli, Cory Abate-Shen, David S. Rickman, Brian Robinson, Luigi Marchionni, Massimo Loda

Cancer Res (2022) 82 (12_Supplement): 3816.

https://doi.org/10.1158/1538-7445.AM2022-3816

Published: 15 June 2022

View articletitled, Abstract 3816: Functional atlas of prostate mesenchyme

Journal Articles

Abstract 5858: A multi-omics signature for patients’ risk classification in prostate cancer

Zhuoran Xu, Elisa Benedetti, Ryan Carelli, Jacob Rosenthal, Hubert Pakula, Mohamed Omar, Renato Umeton, David Brundage, Jan Krumsiek, Massimo Loda, Luigi Marchionni

Cancer Res (2022) 82 (12_Supplement): 5858.

https://doi.org/10.1158/1538-7445.AM2022-5858

Published: 15 June 2022

View articletitled, Abstract 5858: A multi-omics signature for patients’ risk classification in prostate cancer

Journal Articles

Abstract 462: Using attention-based deep multiple instance learning to identify key genetic alterations in prostate cancer from whole slide images

Mohamed Omar, Zhuoran Xu, Ryan Carelli, Jacob Rosenthal, David Brundage, Daniela C. Salles, Eddie L. Imada, Renato Umeton, Edward M. Schaeffer, Brian D. Robinson, Tamara L. Lotan, Massimo Loda, Luigi Marchionni

Cancer Res (2022) 82 (12_Supplement): 462.

https://doi.org/10.1158/1538-7445.AM2022-462

Published: 15 June 2022

View articletitled, Abstract 462: Using attention-based deep multiple instance learning to identify key genetic alterations in prostate cancer from whole slide images

Journal Articles

ELOVL5 Is a Critical and Targetable Fatty Acid Elongase in Prostate Cancer

Cancer Res (2021) 81 (7): 1704–1718.

https://doi.org/10.1158/0008-5472.CAN-20-2511

Published: 01 April 2021

View articletitled, ELOVL5 Is a Critical and Targetable Fatty Acid Elongase in Prostate Cancer

Includes: Supplementary data

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Abstract 4306: Label-free melanoma phenotype classification using AI-based morphological profiling

Abstract 1073: AI-assisted high-dimensional cytological single cell analysis distinguishes normal and malignant urine samples using cell morphology images with high accuracy at the single cell level

Abstract 4987: TREM2 is a radiation-induced target for immunomodulation of tumor-associated macrophages in the prostate cancer tumor microenvironment

Abstract 4877: Morphological detection of chemotherapy resistance in cancer cell lines using AI-based analysis

Abstract 3523: Self-supervised foundation model captures high-dimensional morphology data from single cell brightfield images

Abstract 6934: Integrating deep learning morphology profiling, cell sorting, and scRNASeq reveals sample diversity and enriched sub-populations

Abstract LB170: Artificial intelligence-assisted morphology-based detection and enrichment of malignant effusion tumor cells as a method for molecular profiling

Abstract 5926: High dimensional morphology analysis reveals new insights in melanoma cell heterogeneity

Abstract 2392: Multi-dimensional morphology analysis enables identification and label-free enrichment of heterogeneous tumor cell populations

Abstract 5361: Deep learning models capture high dimensional features for cell morphology analysis

Abstract 5381: A broad-use deep learning model based on multi-dimensional morphology to identify and characterize tumor cell heterogeneity

Abstract 1343: Mesenchymal cell populations associated with different stages of prostate cancer progression in mice and human

The Prostate Cancer Androgen Receptor Cistrome in African American Men Associates with Upregulation of Lipid Metabolism and Immune Response

Abstract 3816: Functional atlas of prostate mesenchyme

Abstract 5858: A multi-omics signature for patients’ risk classification in prostate cancer

Abstract 462: Using attention-based deep multiple instance learning to identify key genetic alterations in prostate cancer from whole slide images

ELOVL5 Is a Critical and Targetable Fatty Acid Elongase in Prostate Cancer

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