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Journal Articles

Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Cancer Res (2024) 84 (6_Supplement): 3892.

https://doi.org/10.1158/1538-7445.AM2024-3892

Published: 22 March 2024

View article titled, Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Journal Articles

Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Kanika Arora, Sarah P. Suehnholz, Hongxin Zhang, Ritika Kundra, Subhiksha Nandakumar, Moriah Nissan, A. Rose Brannon, Chaitanya Bandlamudi, Marc Ladanyi, Alexander Drilon, David B. Solit, Nikolaus Schultz, Michael F. Berger, Debyani Chakravarty

Cancer Res (2024) 84 (6_Supplement): 6129.

https://doi.org/10.1158/1538-7445.AM2024-6129

Published: 22 March 2024

View article titled, Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Journal Articles

Abstract 1249: cBioPortal for Cancer Genomics

Cancer Res (2024) 84 (6_Supplement): 1249.

https://doi.org/10.1158/1538-7445.AM2024-1249

Published: 22 March 2024

View article titled, Abstract 1249: cBioPortal for Cancer Genomics

Journal Articles

Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Amanda Dhaneshwar, Nicole Fernandez, Benjamin Preiser, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Aijazuddin Syed, A. Rose Brannon, Ross Levine, Ahmet Dogan, Alexander Drilon, David B. Solit, Nikolaus Schultz, Debyani Chakravarty

Cancer Res (2024) 84 (6_Supplement): 3544.

https://doi.org/10.1158/1538-7445.AM2024-3544

Published: 22 March 2024

View article titled, Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin Gross, Charles Haynes, Allison Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C. Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

Cancer Res (2023) 83 (23): 3861–3867.

https://doi.org/10.1158/0008-5472.CAN-23-0816

Published: 01 December 2023

View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Includes: Supplementary data

Journal Articles

Abstract 4256: cBioPortal for Cancer Genomics

Cancer Res (2023) 83 (7_Supplement): 4256.

https://doi.org/10.1158/1538-7445.AM2023-4256

Published: 04 April 2023

View article titled, Abstract 4256: cBioPortal for Cancer Genomics

Journal Articles

Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

Cancer Res (2023) 83 (7_Supplement): 6585.

https://doi.org/10.1158/1538-7445.AM2023-6585

Published: 04 April 2023

View article titled, Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

Journal Articles

Abstract 2553: Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes

Ignacio Vázquez-García, Florian Uhlitz, Nicholas Ceglia, Jamie L. Lim, Michelle Wu, Neeman Mohibullah, Arvin Eric B. Ruiz, Kevin M. Boehm, Viktoria Bojilova, Christopher J. Fong, Tyler Funnell, Diljot Grewal, Eliyahu Havasov, Samantha Leung, Arfath Pasha, Druv M. Patel, Maryam Pourmaleki, Nicole Rusk, Hongyu Shi, Rami Vanguri, Marc J. Williams, Allen W. Zhang, Vance Broach, Dennis S. Chi, Arnaud Da Cruz Paula, Ginger J. Gardner, Sarah H. Kim, Matthew Lennon, Kara Long Roche, Yukio Sonoda, Oliver Zivanovic, Ritika Kundra, Agnes Viale, Yonina Bykov, Fatemeh N. Derakhshan, Luke Geneslaw, Ana Maroldi, Andrea Schietinger, Travis J. Hollmann, Samuel F. Bakhoum, Robert A. Soslow, Lora H. Ellenson, Nadeem Abu-Rustum, Carol Aghajanian, Claire F. Friedman, Andrew McPherson, Britta Weigelt, MSK SPECTRUM Consortium, Dmitriy Zamarin, Sohrab P. Shah

Cancer Res (2022) 82 (12_Supplement): 2553.

https://doi.org/10.1158/1538-7445.AM2022-2553

Published: 15 June 2022

View article titled, Abstract 2553: Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes

Journal Articles

Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Cancer Res (2022) 82 (12_Supplement): 3628.

https://doi.org/10.1158/1538-7445.AM2022-3628

Published: 15 June 2022

View article titled, Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Journal Articles

Abstract 1155: cBioPortal for cancer genomics

Cancer Res (2022) 82 (12_Supplement): 1155.

https://doi.org/10.1158/1538-7445.AM2022-1155

Published: 15 June 2022

View article titled, Abstract 1155: cBioPortal for cancer genomics

Journal Articles

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Benjamin Xu, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia E. Rudolph, Ross L. Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty

Cancer Res (2022) 82 (12_Supplement): 1189.

https://doi.org/10.1158/1538-7445.AM2022-1189

Published: 15 June 2022

View article titled, Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Journal Articles

Abstract 2620: Ignoring left truncation in overall survival within real-world genomic-phenomic data leads to inflated survival estimates

Samantha Brown, Jessica A. Lavery, Eva M. Lepisto, Caroline McCarthy, Hira Rizvi, Celeste Yu, Kenneth L. Kehl, Shawn M. Sweeney, Julia E. Rudolph, Nikolaus Schultz, Ritika Kundra, Brooke Mastrogiacomo, Phillipe Bedard, Jeremy L. Warner, Gregory J. Riely, Deborah Schrag, Katherine S. Panageas, The AACR Project GENIE Consortium

Cancer Res (2021) 81 (13_Supplement): 2620.

https://doi.org/10.1158/1538-7445.AM2021-2620

Published: 01 July 2021

View article titled, Abstract 2620: Ignoring left truncation in overall survival within real-world genomic-phenomic data leads to inflated survival estimates

Journal Articles

Abstract 2619: Defining real-world recurrence in the AACR Project GENIE Biopharma Collaborative Data

Jessica A. Lavery, Samantha Brown, Eva Lepisto, Michele L. Lenoue-Newton, Caroline McCarthy, Hira Rizvi, Celeste Yu, Kenneth L. Kehl, Shawn M. Sweeney, Julia E. Rudolph, Nikolaus Schultz, Brooke Mastrogiacomo, Ritika Kundra, Jeremy Warner, Philippe Bedard, Gregory J. Riely, Katherine S. Panageas, Deborah Schrag, AACR Project GENIE Consortium

Cancer Res (2021) 81 (13_Supplement): 2619.

https://doi.org/10.1158/1538-7445.AM2021-2619

Published: 01 July 2021

View article titled, Abstract 2619: Defining real-world recurrence in the AACR Project GENIE Biopharma Collaborative Data

Journal Articles

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Cancer Res (2021) 81 (13_Supplement): 99.

https://doi.org/10.1158/1538-7445.AM2021-99

Published: 01 July 2021

View article titled, Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Journal Articles

Abstract 207: The cBioPortal for Cancer Genomics

Cancer Res (2021) 81 (13_Supplement): 207.

https://doi.org/10.1158/1538-7445.AM2021-207

Published: 01 July 2021

View article titled, Abstract 207: The cBioPortal for Cancer Genomics

Journal Articles

Abstract 3209: The cBioPortal for Cancer Genomics

Cancer Res (2020) 80 (16_Supplement): 3209.

https://doi.org/10.1158/1538-7445.AM2020-3209

Published: 15 August 2020

View article titled, Abstract 3209: The cBioPortal for Cancer Genomics

Journal Articles

Abstract 3208: OncoKB, a precision oncology knowledgebase

Cancer Res (2020) 80 (16_Supplement): 3208.

https://doi.org/10.1158/1538-7445.AM2020-3208

Published: 15 August 2020

View article titled, Abstract 3208: OncoKB, a precision oncology knowledgebase

Journal Articles

Abstract 910: The cBioPortal for cancer genomics

Cancer Res (2019) 79 (13_Supplement): 910.

https://doi.org/10.1158/1538-7445.AM2019-910

Published: 01 July 2019

View article titled, Abstract 910: The cBioPortal for cancer genomics

Journal Articles

Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data

Cancer Res (2018) 78 (13_Supplement): 923.

https://doi.org/10.1158/1538-7445.AM2018-923

Published: 01 July 2018

View article titled, Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data

Journal Articles

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Cancer Res (2018) 78 (13_Supplement): 3302.

https://doi.org/10.1158/1538-7445.AM2018-3302

Published: 01 July 2018

View article titled, Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

NARROW

Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Abstract 1249: cBioPortal for Cancer Genomics

Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Abstract 4256: cBioPortal for Cancer Genomics

Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

Abstract 2553: Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes

Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Abstract 1155: cBioPortal for cancer genomics

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Abstract 2620: Ignoring left truncation in overall survival within real-world genomic-phenomic data leads to inflated survival estimates

Abstract 2619: Defining real-world recurrence in the AACR Project GENIE Biopharma Collaborative Data

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Abstract 207: The cBioPortal for Cancer Genomics

Abstract 3209: The cBioPortal for Cancer Genomics

Abstract 3208: OncoKB, a precision oncology knowledgebase

Abstract 910: The cBioPortal for cancer genomics

Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

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