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Journal Articles

Abstract PO2-16-04: Proteogenomic characterization of non-luminal A versus luminal A breast cancer tumor cells enriched by laser microdissection

Praveen Kumar Raj Kumar, Xiaoying Lin, Tao Liu, Lori Sturtz, Marina Gritsenko, Vladislav Petyuk, Tyler Sagendorf, Brenda Deyarmin, Jianfang Liu, Anupama Praveen-Kumar, Guisong Wang, Jason McDermott, Anil Shukla, Ronald Moore, Matthew Monroe, Bobbie-Jo Webb-Robertson, Jeffrey Hooke, Leigh Fantacone-Campbell, Brad Mostoller, Leonid Kvecher, Jennifer Kane, Jennifer Melley, Stella Somiari, Patrick Soon-Shiong, Richard Smith, Richard Mural, Karin Rodland, Craig Shriver, Albert Kovatich, Hai Hu
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO2-16-04.
https://doi.org/10.1158/1538-7445.SABCS23-PO2-16-04
Published: 02 May 2024
View articletitled, Abstract PO2-16-04: Proteogenomic characterization of non-luminal A versus luminal A breast cancer tumor cells enriched by laser microdissection
Journal Articles

Abstract 5123: Proteogenomic characterization reveals mitotic kinase and replication stress implicated in ovarian high-grade serous cancer

Jason McDermott, Osama Arshad, Vladislav Petyuk, Yi Fu, Marina Gritsenko, Chia-Feng Tsai, Samuel Payne, Mathangi Thiagarajan, Christopher Kinsinger, Ana Robles, Emily Boja, Henry Rodriguez, Daniel Chan, Bing Zhang, Zhen Zhang, Li Ding, Richard Smith, Tao Liu, Karin Rodland
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5123.
https://doi.org/10.1158/1538-7445.AM2020-5123
Published: 15 August 2020
View articletitled, Abstract 5123: Proteogenomic characterization reveals mitotic kinase and replication stress implicated in ovarian high-grade serous cancer
Journal Articles

Abstract 2856: An intelligent boosting to amplify signal with isobaric labeling (iBASIL) strategy for precise quantitative single-cell proteomics analysis

Chia-Feng Tsai, Rui Zhao, Ronald Moore, Sarah Williams, Kendall Schultz, Paul Piehowski, Ljiljana Pasa-Tolic, Karin Rodland, Richard Smith, Tujin Shi, Ying Zhu, Ying Zhu, Tao Liu
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2856.
https://doi.org/10.1158/1538-7445.AM2020-2856
Published: 15 August 2020
View articletitled, Abstract 2856: An intelligent boosting to amplify signal with isobaric labeling (iBASIL) strategy for precise quantitative single-cell proteomics analysis
Journal Articles

Abstract 3740: Role of phosphatidylcholine in β-catenin-driven hepatocellular carcinoma

Junko Kuramoto, Richard Smith, Sharanya M. Kalasekar, Alexis Fulbright, Gregory S. Ducker, Kimberley J. Evason
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3740.
https://doi.org/10.1158/1538-7445.AM2020-3740
Published: 15 August 2020
View articletitled, Abstract 3740: Role of phosphatidylcholine in β-catenin-driven hepatocellular carcinoma
Journal Articles

Abstract 3165: Identification of candidate biomarkers for aggressive prostate cancer using targeted proteomics and FFPE tissue samples with outcomes data

Yuqian Gao, Yi-Ting Wang, Hui Wang, Denise Young, Jennifer Cullen, Yingjie Song, Yongmei Chen, Athena Schepmoes, Gyorgy Petrovics, Thomas Fillmore, Tujin Shi, Wei-Jun Qian, Richard Smith, Sudhir Srivastava, Jacob Kagan, Albert Dobi, Inger Rosner, Karin Rodland, Isabell Sesterhenn, Shiv Srivastava, Tao Liu
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3165.
https://doi.org/10.1158/1538-7445.AM2019-3165
Published: 01 July 2019
View articletitled, Abstract 3165: Identification of candidate biomarkers for aggressive prostate cancer using targeted proteomics and FFPE tissue samples with outcomes data
Journal Articles

Abstract 2573: Selection of candidate biomarkers for aggressive prostate cancer based on targeted proteomics

Yuqian Gao, Hui Wang, Jennifer Cullen, Yongmei Chen, Athena Schepmoes, Gyorgy Petrovics, Thomas Fillmore, Tujin Shi, Wei-Jun Qian, Richard Smith, Sudhir Srivastava, Jacob Kagan, Albert Dobi, Karin Rodland, Shiv Srivastava, Tao Liu
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2573.
https://doi.org/10.1158/1538-7445.AM2018-2573
Published: 01 July 2018
View articletitled, Abstract 2573: Selection of candidate biomarkers for aggressive prostate cancer based on targeted proteomics
Journal Articles

Abstract 226: Verification of prostate cancer genomics biomarker candidates at protein level using PRISM-SRM

Hui Wang, Yuqian Gao, Athena Schepmoes, Gyorgy Petrovics, Jennifer Cullen, Thomas Fillmore, Tujin Shi, Wei-Jun Qian, Richard Smith, Brandi Weaver, Robin Leach, Ian Thompson, Sudhir Srivastava, Jacob Kagan, Albert Dobi, Karin Rodland, Shiv Srivastava, Tao Liu
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 226.
https://doi.org/10.1158/1538-7445.AM2017-226
Published: 01 July 2017
View articletitled, Abstract 226: Verification of prostate cancer genomics biomarker candidates at protein level using PRISM-SRM
Journal Articles

Abstract 208: Proteomic measurements of protein abundance and phosphorylation identify novel kinase-substrate relationships in ovarian cancer

Jason E. McDermott, Tao Liu, Samuel Payne, Vladislav Petyuk, Hui Zhang, Zhen Zhang, Daniel Chan, Richard Smith, Karin Rodland, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 208.
https://doi.org/10.1158/1538-7445.AM2017-208
Published: 01 July 2017
View articletitled, Abstract 208: Proteomic measurements of protein abundance and phosphorylation identify novel kinase-substrate relationships in ovarian cancer
Journal Articles

Abstract 3872: Quantification of mutant SPOP proteins in prostate cancer using targeted proteomics

Hui Wang, Christopher Barbieri, Jintang He, Yuqian Gao, Chaochao Wu, Athena Schepmoes, Thomas Fillmore, Tujin Shi, Sung-Suk Chae, Dennis Huang, Juan Miguel Mosquera, Wei-Jun Qian, Richard Smith, Sudhir Srivastava, Jacob Kagan, David Camp, Karin Rodland, Mark Rubin, Tao Liu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3872.
https://doi.org/10.1158/1538-7445.AM2016-3872
Published: 15 July 2016
View articletitled, Abstract 3872: Quantification of mutant SPOP proteins in prostate cancer using targeted proteomics
Journal Articles

Abstract 774: Proteogenomic characterization of high-grade serous ovarian cancer

Jason E. McDermott, Samuel Payne, Debjit Ray, Vladislav Petyuk, Ronald Moore, Marina Gritsenko, Richard Smith, Karin Rodland
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 774.
https://doi.org/10.1158/1538-7445.AM2016-774
Published: 15 July 2016
View articletitled, Abstract 774: Proteogenomic characterization of high-grade serous ovarian cancer
Journal Articles

Abstract 1818: Analytical platform evaluation for quantification of ERG oncoprotein in prostate cancer using protein and mRNA detection methods

Jintang He, Athena Schepmoes, Anshu Rastogi, Shyh-Han Tan, Wusheng Yan, Wei Huang, Sreedatta Banerjee, Tujin Shi, Chaochao Wu, Thomas Fillmore, Yuqian Gao, Jacob Kagan, Sudhir Srivastava, Richard Smith, Wei-Jun Qian, David McLeod, Gyorgy Petrovics, Albert Dobi, Alagarsamy Srinivasan, Shiv Srivastava, Karin Rodland, Tao Liu, David Camp
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 1818.
https://doi.org/10.1158/1538-7445.AM2015-1818
Published: 01 August 2015
View articletitled, Abstract 1818: Analytical platform evaluation for quantification of ERG oncoprotein in prostate cancer using protein and mRNA detection methods
Journal Articles

Abstract 3207: Application of an antibody-free, highly sensitive PRISM-SRM proteomics approach for monitoring low abundance proteins and protein isoforms in cell lines and tumor tissue.

Jintang He, Xuefei Sun, Tujin Shi, Athena Schepmoes, Thomas Fillmore, Vladislav Petyuk, Fang Xie, Marina Gritsenko, Feng Yang, Naoki Kitabayashi, Sung Suk Chae, Mark Rubin, Javed Siddiqui, John Wei, Arul Chinnaiyan, Wei-Jun Qian, Richard Smith, Jacob Kagan, Sudhir Srivastava, Tao Liu, Karin Rodland, David Camp
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 3207.
https://doi.org/10.1158/1538-7445.AM2013-3207
Published: 15 April 2013
View articletitled, Abstract 3207: Application of an antibody-free, highly sensitive PRISM-SRM proteomics approach for monitoring low abundance proteins and protein isoforms in cell lines and tumor tissue.
Journal Articles

Abstract 673: Use of membrane-tethered anti-thrombin compounds in prostate cancer therapy

Christine Galustian, Teresa Melchionna, Osamu Ukimura, Inderbir Gill, Richard Smith, Prokar Dasgupta
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 673.
https://doi.org/10.1158/1538-7445.AM2011-673
Published: 15 April 2011
View articletitled, Abstract 673: Use of membrane-tethered anti-thrombin compounds in prostate cancer therapy
Journal Articles

Abstract 4864: Antibody detection of translocations (ADOT) in Ewing's sarcoma

Wen Luo, Brett Milash, Brian Dalley, Richard Smith, Natalie Dutrow, Brad Cairns, Stephen Lessnick
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 4864.
https://doi.org/10.1158/1538-7445.AM2011-4864
Published: 15 April 2011
View articletitled, Abstract 4864: Antibody detection of translocations (ADOT) in Ewing's sarcoma
Journal Articles

EWS/FLI and Its Downstream Target NR0B1 Interact Directly to Modulate Transcription and Oncogenesis in Ewing's Sarcoma

Michelle Kinsey, Richard Smith, Anita K. Iyer, Edward R.B. McCabe, Stephen L. Lessnick
Journal: Cancer Research
Cancer Res (2009) 69 (23): 9047–9055.
https://doi.org/10.1158/0008-5472.CAN-09-1540
Published: 30 November 2009
View articletitled, EWS/FLI and Its Downstream Target NR0B1 Interact Directly to Modulate Transcription and Oncogenesis in Ewing's Sarcoma
Open the PDF for EWS/FLI and Its Downstream Target NR0B1 Interact Directly to Modulate Transcription and Oncogenesis in Ewing's Sarcoma in another window
Includes: Supplementary data
Journal Articles

Proteomic analysis of purified pseudopodia reveals signaling networks and novel proteins involved in cell migration and cancer cell metastasis

Yingchun Wang, Shi-jian Ding, Greg Cantin, Wei Wang, Jon Jacobs, David Camp, John Yates, Richard Smith, Richard Klemke
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): 2437.
Published: 01 May 2008
View articletitled, Proteomic analysis of purified pseudopodia reveals signaling networks and novel proteins involved in cell migration and cancer cell metastasis
Journal Articles

Functional analysis of EWS/FLI target genes via an RNAi mini-library

Richard Smith, Jeffrey Hancock, Michelle Kinsey, Leah Owen, Stephen Lessnick
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 1176.
Published: 01 May 2007
View articletitled, Functional analysis of EWS/FLI target genes via an RNAi mini-library
Journal Articles

Translational studies of depsipeptide (romidepsin, FK228), a histone deacetylase (HDAC) inhibitor, in patients with head and neck cancer

Missak Haigentz, Leslie Adrien, Thomas Belbin, John Greally, John Mariadason, Geoffrey Shapiro, Lucian Chirieac, Sabina Signoretti, Margaret Brandwein-Gensler, Mimi Kim, John Wright, Catherine Sarta, Richard Smith, Robert Haddad
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 3524.
Published: 01 May 2007
View articletitled, Translational studies of depsipeptide (romidepsin, FK228), a histone deacetylase (HDAC) inhibitor, in patients with head and neck cancer
Journal Articles

Molecular Classification of Head and Neck Squamous Cell Carcinoma Using cDNA Microarrays

Thomas J. Belbin, Bhuvanesh Singh, Ilana Barber, Nicholas Socci, Bruce Wenig, Richard Smith, Michael B. Prystowsky, Geoffrey Childs
Journal: Cancer Research
Cancer Res (2002) 62 (4): 1184–1190.
Published: 01 February 2002
View articletitled, Molecular Classification of Head and Neck Squamous Cell Carcinoma Using cDNA Microarrays
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Journal Articles

BRG1, a Component of the SWI-SNF Complex, Is Mutated in Multiple Human Tumor Cell Lines

Alexander K. C. Wong, Frances Shanahan, Yuan Chen, Lubing Lian, Phuong Ha, Kristin Hendricks, Siavash Ghaffari, Diana Iliev, Brandon Penn, Anne-Marie Woodland, Richard Smith, Grant Salada, Arlene Carillo, Kirsten Laity, Jamila Gupte, Brad Swedlund, Sean V. Tavtigian, David H-F. Teng, Emma Lees
Journal: Cancer Research
Cancer Res (2000) 60 (21): 6171–6177.
Published: 01 November 2000
View articletitled, BRG1, a Component of the SWI-SNF Complex, Is Mutated in Multiple Human Tumor Cell Lines
Open the PDF for BRG1, a Component of the SWI-SNF Complex, Is Mutated in Multiple Human Tumor Cell Lines in another window