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Journal Articles

Abstract 3882: Patterns of genomic patient-model conservation and evolution in the Human Cancer Models Initiative (HCMI) next-generation cancer model resource

Cancer Res (2025) 85 (8_Supplement_1): 3882.

https://doi.org/10.1158/1538-7445.AM2025-3882

Published: 21 April 2025

View article titled, Abstract 3882: Patterns of genomic patient-model conservation and evolution in the Human Cancer Models Initiative (HCMI) next-generation cancer model resource

Journal Articles

Abstract 6358: Single cell transcriptional dynamics in the HCMI cancer model collection

Cancer Res (2025) 85 (8_Supplement_1): 6358.

https://doi.org/10.1158/1538-7445.AM2025-6358

Published: 21 April 2025

View article titled, Abstract 6358: Single cell transcriptional dynamics in the HCMI cancer model collection

Journal Articles

Abstract 1165: The landscape of molecular targets across 665 next-generation cancer models in the human cancer models initiative identifies opportunities for improved therapy and overcoming resistance

Cancer Res (2025) 85 (8_Supplement_1): 1165.

https://doi.org/10.1158/1538-7445.AM2025-1165

Published: 21 April 2025

View article titled, Abstract 1165: The landscape of molecular targets across 665 next-generation cancer models in the human cancer models initiative identifies opportunities for improved therapy and overcoming resistance

Journal Articles

Abstract 4005: Integrative clinical and molecular characterization of an international community resource of organoid models of human cancer

Cancer Res (2025) 85 (8_Supplement_1): 4005.

https://doi.org/10.1158/1538-7445.AM2025-4005

Published: 21 April 2025

View article titled, Abstract 4005: Integrative clinical and molecular characterization of an international community resource of organoid models of human cancer

Journal Articles

Abstract 6608: Integrating HCMI models and tumors with CCLE and TCGA: Advancing cancer modeling and precision oncology

Cancer Res (2025) 85 (8_Supplement_1): 6608.

https://doi.org/10.1158/1538-7445.AM2025-6608

Published: 21 April 2025

View article titled, Abstract 6608: Integrating HCMI models and tumors with CCLE and TCGA: Advancing cancer modeling and precision oncology

Journal Articles

Abstract B025: Integrative clinical and molecular analysis of 665 next-generation in vitro cancer models generated by the the Human Cancer Models Initiative (HCMI) for advancing precision medicine and functional drug discovery

Cancer Res (2025) 85 (5_Supplement): B025.

https://doi.org/10.1158/1538-7445.GENFUNC25-B025

Published: 11 March 2025

View article titled, Abstract B025: Integrative clinical and molecular analysis of 665 next-generation in vitro cancer models generated by the the Human Cancer Models Initiative (HCMI) for advancing precision medicine and functional drug discovery

Journal Articles

Abstract 863: Scratch: A highly modular pipeline for single-cell cancer research

Andre F. Fonseca, Guangchun Han, Marcel Ribeiro-Dantas, Enyu Dai, Diljot Grewal, Matthew Zatzman, Eliyahu Havasov, Andrew McPherson, Break Through Cancer, Data Science TeamLab, Michael N. Noble, Rameen Beroukhim, Rachel Karchin, Sohrab P. Shah, Linghua Wang

Cancer Res (2024) 84 (6_Supplement): 863.

https://doi.org/10.1158/1538-7445.AM2024-863

Published: 22 March 2024

View article titled, Abstract 863: Scratch: A highly modular pipeline for single-cell cancer research

Journal Articles

The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen

Tathiane M. Malta, Thais S. Sabedot, Natalia S. Morosini, Indrani Datta, Luciano Garofano, Wies Vallentgoed, Frederick S. Varn, Kenneth Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S. Barnholtz-Sloan, Hui K. Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C. Johnson, Simona Cazacu, Ana C. deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C.M. Kouwenhoven, Simona Migliozzi, Simone P. Niclou, Johanna M. Niers, D. Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A. Sillevis Smitt, Marion Smits, Lucy F. Stead, Martin J. van den Bent, Erwin G. Van Meir, Annemiek Walenkamp, Tobias Weiss, Michael Weller, Bart A. Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J. French, Laila M. Poisson, Consortium The GLASS, Adelheid Woehrer, Allison K Lowman, Ana C deCarvalho, Ana Valeria Castro, Andrea Transou, Andrew R Brodbelt, Ann-Christin Hau, Anna Lasorella, Anna Golebiewska, Annemiek Walenkamp, Annette M Molinaro, Antonio Iavarone, Azzam Ismail, Bart A Westerman, Bauke Ylstra, Christoph Bock, D. Ryan Ormond, Daniel J Brat, Emre Kocakavuk, Erwin G Van Meir, Floris P Barthel, Frederick S Varn, Fulvio D'Angelo, Gaetano Finocchiaro, Ganesh Rao, Gelareh Zadeh, Guido Reifenberger, Ho Keu ngNg, Hoon Kim, Houtan Noushmehr, Hrvoje Miletic, Hui K Gan, Indrani Datta, Jack Rock, James M Snyder, Jason T Huse, Jennifer M Connelly, Jill S Barnholtz-Sloan, Johanna M Niers, John F deGroot, Kadir C Akdemir, Kasthuri S Kannan, Keith L Ligon, Kenneth Aldape, Ketan R Bulsara, Kevin C Johnson, Kristin D Alfaro, Laila M Poisson, Luciano Garofano, Lucy F Stead, MacLean P Nasrallah, Marion Smits, Martin J van den Bent, Mathilde CM Kouwenhoven, Michael Weller, Mohammad Hasanain, Mustafa Khasraw, Peter V Gould, Peter A Sillevis Smitt, Peter S LaViolette, Philip D Tatman, Pieter Wesseling, Pim J French, Rameen Beroukhim, Roel G.W. Verhaak, Simona Migliozzi, Simone P Niclou, Spyridon Bakas, Steven Kalkanis, Sun Ha Paek, Susan C Short, Tabatabai Ghazaleh, Tathiane M Malta, Thais S Sabedot, Tobias Weiss, Tobias Walbert, Ujjwal Baid, Wies Vallentgoed, W. K. Alfred Yung, Roel G.W. Verhaak, Antonio Iavarone, Houtan Noushmehr

Cancer Res (2024) 84 (5): 741–756.

https://doi.org/10.1158/0008-5472.CAN-23-2093

Published: 04 March 2024

View article titled, The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen

Includes: Supplementary data

Journal Articles

Abstract 1201: ALK amplification and rearrangements are recurrent targetable events in congenital and adult glioblastoma

Cancer Res (2023) 83 (7_Supplement): 1201.

https://doi.org/10.1158/1538-7445.AM2023-1201

Published: 04 April 2023

View article titled, Abstract 1201: ALK amplification and rearrangements are recurrent targetable events in congenital and adult glioblastoma

Journal Articles

Abstract 5719: Clinical response to the PDGFRα inhibitor avapritinib in high-grade glioma patients

Lisa Mayr, Maria Trissal, Kallen Schwark, Jenna Labelle, Andrew Groves, Julia Furtner-Srajer, Jeffrey Supko, Liesa Weiler-Wichtl, Olivia Hack, Jacob Rozowsky, Joana G. Marques, Eshini Pandatharatna, Ulrike Leiss, Verena Rosenmayr, Frank Dubois, Noah F. Greenwald, Sibylle Madlener, Armin S. Guntner, Hana Pálová, Natalia Stepien, Daniela Lötsch-Gojo, Christian Dorfer, Karin Dieckmann, Andreas Peyrl, Amedeo A. Azizi, Alicia Baumgartner, Ondřej Slabý, Petra Pokorná, Pratiti Bandopadhayay, Rameen Beroukhim, Keith Ligon, Christof Kramm, Annika Bronsema, Simon Bailey, Ana Guerreiro Stücklin, Sabine Mueller, David T. Jones, Natalie Jäger, Jaroslav Štěrba, Leonhard Müllauer, Christine Haberler, Chandan Kumar-Sinha, Arul Chinnaiyan, Rajen Mody, Mary Skrypek, Nina Martinez, Daniel C. Bowers, Carl Koschmann, Johannes Gojo, Mariella Filbin

Cancer Res (2023) 83 (7_Supplement): 5719.

https://doi.org/10.1158/1538-7445.AM2023-5719

Published: 04 April 2023

View article titled, Abstract 5719: Clinical response to the PDGFRα inhibitor avapritinib in high-grade glioma patients

Journal Articles

Abstract 1166: Leveraging existing data to identify ancestry-associated features across multiple cancer types

Jian Carrot-Zhang, Justin Newberg, Garrett Frampton, Rameen Beroukhim

Cancer Res (2022) 82 (12_Supplement): 1166.

https://doi.org/10.1158/1538-7445.AM2022-1166

Published: 15 June 2022

View article titled, Abstract 1166: Leveraging existing data to identify ancestry-associated features across multiple cancer types

Journal Articles

Abstract 2173: Ancestry bias in CRISPR guide design impedes discovery of genetic dependencies

Sean Alexander Misek, Aaron Fultineer, Jeremie Kalfon, Javad Noorbakhsh, Isabella Boyle, Joshua Dempster, Lia Petronio, Katherine Huang, James McFarland, Rameen Beroukhim, Jesse Boehm

Cancer Res (2022) 82 (12_Supplement): 2173.

https://doi.org/10.1158/1538-7445.AM2022-2173

Published: 15 June 2022

View article titled, Abstract 2173: Ancestry bias in CRISPR guide design impedes discovery of genetic dependencies

Journal Articles

Abstract 2710: Associations between structural variant signatures and drug sensitivity in cell lines

Simona Dalin, Frank Dubois, Shu Zhang, Alexander Crane, Jeremie Kalfon, Javad Noorbakhsh, Rameen Beroukhim

Cancer Res (2022) 82 (12_Supplement): 2710.

https://doi.org/10.1158/1538-7445.AM2022-2710

Published: 15 June 2022

View article titled, Abstract 2710: Associations between structural variant signatures and drug sensitivity in cell lines

Journal Articles

Abstract 2135: Functional models of chromosome arm aneuploidies in lung squamous cell carcinoma

Alison Marie Taylor, Sejal Jain, Juliann Shih, Andrew D. Cherniack, Rameen Beroukhim, Matthew Meyerson

Cancer Res (2021) 81 (13_Supplement): 2135.

https://doi.org/10.1158/1538-7445.AM2021-2135

Published: 01 July 2021

View article titled, Abstract 2135: Functional models of chromosome arm aneuploidies in lung squamous cell carcinoma

Journal Articles

Abstract 5705: Mechanisms and therapeutic implications of hypermutation in gliomas

Mehdi Touat, Yvonne Y. Li, Adam N. Boynton, Liam F. Spurr, Bryan Iorgulescu, Craig L. Bohrson, Isidro Cortes-Ciriano, Jack E. Geduldig, Kristine Pelton, Mary J. Lim-Fat, Sangita Pal, Shakti H. Ramkissoon, Frank Dubois, Charlotte Bellamy, Naomi Currimjee, Kenin Qian, Seth Malinowski, Aniket Shetty, Kin-Hoe Chow, Maïté Verreault, Erell Guillerm, Samy Ammari, Frédéric Beuvon, Karima Mokhtari, Agusti Alentorn, Caroline Dehais, Caroline Houillier, Florence Laigle-Donadey, Dimitri Psimaras, Alexandre Carpentier, Philippe Cornu, Laurent Capelle, Bertrand Mathon, Jill S. Barnholtz-Sloan, Arnab Chakravarti, Wenya L. Bi, Garrett M. Frampton, Marc Sanson, Brian M. Alexander, Andrew Cherniack, Patrick Y. Wen, David A. Reardon, Aurelien Marabelle, Peter J. Park, Ahmed Idbaih, Rameen Beroukhim, Pratiti Bandopadhayay, Franck Bielle, Keith L. Ligon

Cancer Res (2020) 80 (16_Supplement): 5705.

https://doi.org/10.1158/1538-7445.AM2020-5705

Published: 15 August 2020

View article titled, Abstract 5705: Mechanisms and therapeutic implications of hypermutation in gliomas

Journal Articles

Abstract A44: Functional models of chromosome arm-level aneuploidies in cancer

Alison M. Taylor, Sejal Jain, Juliann Shih, Andrew D. Cherniack, Rameen Beroukhim, Matthew Meyerson

Cancer Res (2020) 80 (11_Supplement): A44.

https://doi.org/10.1158/1538-7445.CAMODELS2020-A44

Published: 02 June 2020

View article titled, Abstract A44: Functional models of chromosome arm-level aneuploidies in cancer

Journal Articles

Abstract 3647: Single cell RNA sequencing reveals mitogenic and progenitor gene programs inBRAF-rearranged pilocytic astrocytomas

Cancer Res (2019) 79 (13_Supplement): 3647.

https://doi.org/10.1158/1538-7445.AM2019-3647

Published: 01 July 2019

View article titled, Abstract 3647: Single cell RNA sequencing reveals mitogenic and progenitor gene programs inBRAF-rearranged pilocytic astrocytomas

Journal Articles

Abstract B18: Modeling renal medullary carcinomas identifies druggable vulnerabilities in SMARCB1-deficient cancers

Andrew L. Hong, Yuen-Yi Tseng, Bryan D. Kynnap, Mihir B. Doshi, Jeremiah Wala, Gabriel Sandoval, Alanna J. Church, Elizabeth Mullen, Cigall Kadoch, Charles W.M. Roberts, Rameen Beroukhim, Jesse S. Boehm, William C. Hahn

Cancer Res (2018) 78 (19_Supplement): B18.

https://doi.org/10.1158/1538-7445.PEDCA17-B18

Published: 01 October 2018

View article titled, Abstract B18: Modeling renal medullary carcinomas identifies druggable vulnerabilities in SMARCB1-deficient cancers

Journal Articles

Abstract 1028: Patient-derived xenografts undergo mouse-specific tumor evolution

Uri Ben-David, Gavin Ha, Yuen-Yi Tseng, Noah F. Greenwald, Coyin Oh, Juliann Shih, James M. McFarland, Bang Wong, Jesse S. Boehm, Rameen Beroukhim, Todd R. Golub

Cancer Res (2018) 78 (13_Supplement): 1028.

https://doi.org/10.1158/1538-7445.AM2018-1028

Published: 01 July 2018

View article titled, Abstract 1028: Patient-derived xenografts undergo mouse-specific tumor evolution

Journal Articles

Abstract 218: The evolutionary history of 2,658 cancers

Cancer Res (2018) 78 (13_Supplement): 218.

https://doi.org/10.1158/1538-7445.AM2018-218

Published: 01 July 2018

View article titled, Abstract 218: The evolutionary history of 2,658 cancers

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Abstract 3882: Patterns of genomic patient-model conservation and evolution in the Human Cancer Models Initiative (HCMI) next-generation cancer model resource

Abstract 6358: Single cell transcriptional dynamics in the HCMI cancer model collection

Abstract 1165: The landscape of molecular targets across 665 next-generation cancer models in the human cancer models initiative identifies opportunities for improved therapy and overcoming resistance

Abstract 4005: Integrative clinical and molecular characterization of an international community resource of organoid models of human cancer

Abstract 6608: Integrating HCMI models and tumors with CCLE and TCGA: Advancing cancer modeling and precision oncology

Abstract B025: Integrative clinical and molecular analysis of 665 next-generation in vitro cancer models generated by the the Human Cancer Models Initiative (HCMI) for advancing precision medicine and functional drug discovery

Abstract 863: Scratch: A highly modular pipeline for single-cell cancer research

The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen

Abstract 1201: ALK amplification and rearrangements are recurrent targetable events in congenital and adult glioblastoma

Abstract 5719: Clinical response to the PDGFRα inhibitor avapritinib in high-grade glioma patients

Abstract 1166: Leveraging existing data to identify ancestry-associated features across multiple cancer types

Abstract 2173: Ancestry bias in CRISPR guide design impedes discovery of genetic dependencies

Abstract 2710: Associations between structural variant signatures and drug sensitivity in cell lines

Abstract 2135: Functional models of chromosome arm aneuploidies in lung squamous cell carcinoma

Abstract 5705: Mechanisms and therapeutic implications of hypermutation in gliomas

Abstract A44: Functional models of chromosome arm-level aneuploidies in cancer

Abstract 3647: Single cell RNA sequencing reveals mitogenic and progenitor gene programs inBRAF-rearranged pilocytic astrocytomas

Abstract B18: Modeling renal medullary carcinomas identifies druggable vulnerabilities in SMARCB1-deficient cancers

Abstract 1028: Patient-derived xenografts undergo mouse-specific tumor evolution

Abstract 218: The evolutionary history of 2,658 cancers

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