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Journal Articles

Abstract A041: Development of novel in-vitro mixed-cell models to capture genomic heterogeneity in prostate tumors

Sampreeti Jena, Daniel Kim, Adam M. Lee, Weijie Zhang, R. Stephanie Huang

Cancer Res (2023) 83 (11_Supplement): A041.

https://doi.org/10.1158/1538-7445.PRCA2023-A041

Published: 02 June 2023

View article titled, Abstract A041: Development of novel in-vitro mixed-cell models to capture genomic heterogeneity in prostate tumors

Journal Articles

Abstract LB067: NF1 deletion potentiates tumorigenesis and activates expression of cancer-related kinases in an iPSC-based model of H3.3K27M diffuse intrinsic pontine glioma

Kasey Skinner, Tomoyuki Koga, Shunichiro Miki, Robert F. Gruener, R. Stephanie Huang, Frank Furnari, Ryan Miller

Cancer Res (2022) 82 (12_Supplement): LB067.

https://doi.org/10.1158/1538-7445.AM2022-LB067

Published: 15 June 2022

View article titled, Abstract LB067: NF1 deletion potentiates tumorigenesis and activates expression of cancer-related kinases in an iPSC-based model of H3.3K27M diffuse intrinsic pontine glioma

Journal Articles

Abstract 994: Investigating inhibition of nuclear export in breast cancer cells

Robert F. Gruener, Geoffrey L. Greene, R. Stephanie Huang

Cancer Res (2021) 81 (13_Supplement): 994.

https://doi.org/10.1158/1538-7445.AM2021-994

Published: 01 July 2021

View article titled, Abstract 994: Investigating inhibition of nuclear export in breast cancer cells

Journal Articles

Abstract 6428: Imputing a more selective therapy: Identifying Wee1 and XPO1 inhibitors for TNBC

Robert F. Gruener, Montserrat Tijerina, Geoffrey L. Greene, R. Stephanie Huang

Cancer Res (2020) 80 (16_Supplement): 6428.

https://doi.org/10.1158/1538-7445.AM2020-6428

Published: 15 August 2020

View article titled, Abstract 6428: Imputing a more selective therapy: Identifying Wee1 and XPO1 inhibitors for TNBC

Journal Articles

Abstract 3578: Comprehensive pharmacogenomic analysis establishes lncRNAs as protein-coding independent biomarker of drug response in human cancers

Aritro Nath, Eunice Y. Lau, Adam M. Lee, Paul Geeleher, William C. Cho, R. Stephanie Huang

Cancer Res (2019) 79 (13_Supplement): 3578.

https://doi.org/10.1158/1538-7445.AM2019-3578

Published: 01 July 2019

View article titled, Abstract 3578: Comprehensive pharmacogenomic analysis establishes lncRNAs as protein-coding independent biomarker of drug response in human cancers

Journal Articles

Abstract 5097: Clinical trial outcomes for drug combination therapies can be predicted by modeling independent action using cancer cell line screens

Alexander Ling, R. Stephanie Huang

Cancer Res (2019) 79 (13_Supplement): 5097.

https://doi.org/10.1158/1538-7445.AM2019-5097

Published: 01 July 2019

View article titled, Abstract 5097: Clinical trial outcomes for drug combination therapies can be predicted by modeling independent action using cancer cell line screens

Journal Articles

Abstract 3897: Pharmacogenomic landscape of long non-coding RNAs in human cancers

Aritro Nath, R. Stephanie Huang

Cancer Res (2018) 78 (13_Supplement): 3897.

https://doi.org/10.1158/1538-7445.AM2018-3897

Published: 01 July 2018

View article titled, Abstract 3897: Pharmacogenomic landscape of long non-coding RNAs in human cancers

Journal Articles

Abstract 4271: Most expression quantitative trait loci discovered in tumors cannot be attributed to cancer cells

Paul Geeleher, Fan Wang, Zheny Zhang, Robert L. Grossman, Cathal Seoighe, R. Stephanie Huang

Cancer Res (2018) 78 (13_Supplement): 4271.

https://doi.org/10.1158/1538-7445.AM2018-4271

Published: 01 July 2018

View article titled, Abstract 4271: Most expression quantitative trait loci discovered in tumors cannot be attributed to cancer cells

Journal Articles

Abstract 5035: IDWAS: Imputing drug response in large cohorts of cancer patients to discover novel predictive biomarkers

Paul Geeleher, Zhenyu Zhang, Fan Wang, Aritro Nath, Steven Bhutra, Robert Grossman, R. Stephanie Huang

Cancer Res (2017) 77 (13_Supplement): 5035.

https://doi.org/10.1158/1538-7445.AM2017-5035

Published: 01 July 2017

View article titled, Abstract 5035: IDWAS: Imputing drug response in large cohorts of cancer patients to discover novel predictive biomarkers

Journal Articles

Abstract 3481: Leveraging protein coding gene expression profiles to accurately impute lncRNA transcriptome of cancer cells

Aritro Nath, Paul Geeleher, R. Stephanie Huang

Cancer Res (2017) 77 (13_Supplement): 3481.

https://doi.org/10.1158/1538-7445.AM2017-3481

Published: 01 July 2017

View article titled, Abstract 3481: Leveraging protein coding gene expression profiles to accurately impute lncRNA transcriptome of cancer cells

Journal Articles

Abstract 2039: Exploring the longitudinal transcriptomic landscape of tyrosine kinase inhibitor treatment response in chronic myeloid leukemia patients

Aritro Nath, Fan Wang, Divya Lenkala, Bonnie LaCroix, Nancy Glavin, Kristen Kipping-Johnson, Paul Geeleher, Michael Thirman, Lucy Godley, Gordana Raca, Richard Larson, R. Stephanie Huang.

Cancer Res (2016) 76 (14_Supplement): 2039.

https://doi.org/10.1158/1538-7445.AM2016-2039

Published: 15 July 2016

View article titled, Abstract 2039: Exploring the longitudinal transcriptomic landscape of tyrosine kinase inhibitor treatment response in chronic myeloid leukemia patients

Journal Articles

Abstract 2100: Imputation of drug sensitivity levels in The Cancer Genome Atlas using machine learning identifies novel predictors of chemotherapeutic response

Paul Geeleher, R. Stephanie Huang, Fan Wang, Gladys Morrison

Cancer Res (2016) 76 (14_Supplement): 2100.

https://doi.org/10.1158/1538-7445.AM2016-2100

Published: 15 July 2016

View article titled, Abstract 2100: Imputation of drug sensitivity levels in The Cancer Genome Atlas using machine learning identifies novel predictors of chemotherapeutic response

Journal Articles

Abstract A1-48: Whole genome expression based drug repurposing

Paul Geeleher, Steven Bhutra, Jacqueline Wang, R. Stephanie Huang

Cancer Res (2015) 75 (22_Supplement_1): A1-48.

https://doi.org/10.1158/1538-7445.TRANSCAGEN-A1-48

Published: 15 November 2015

View article titled, Abstract A1-48: Whole genome expression based drug repurposing

Journal Articles

Abstract B1-01: Whole genome expression based drug repurposing

Paul Geeleher, Steven Bhutra, Jacqueline Wang, R. Stephanie Huang

Cancer Res (2015) 75 (22_Supplement_2): B1-01.

https://doi.org/10.1158/1538-7445.COMPSYSBIO-B1-01

Published: 15 November 2015

View article titled, Abstract B1-01: Whole genome expression based drug repurposing

Journal Articles

Abstract 5561: Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines

Paul Geeleher, Nancy Cox, R. Stephanie Huang

Cancer Res (2014) 74 (19_Supplement): 5561.

https://doi.org/10.1158/1538-7445.AM2014-5561

Published: 01 October 2014

View article titled, Abstract 5561: Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines

Journal Articles

Abstract 3636: Systems biology approach links genetic, epigenetic, and transcriptomic features to tamoxifen sensitivity.

Eric R. Gamazon, Liming Weng, Hae Kyung Im, Xiaotong Zhang, Dana M. Ziliak, R. Stephanie Huang

Cancer Res (2013) 73 (8_Supplement): 3636.

https://doi.org/10.1158/1538-7445.AM2013-3636

Published: 15 April 2013

View article titled, Abstract 3636: Systems biology approach links genetic, epigenetic, and transcriptomic features to tamoxifen sensitivity.

Journal Articles

Abstract 1643: MicroRNA processing genes and implications for complex traits

Eric R. Gamazon, Hae Kyung Im, Bonnie LaCroix, Dana Ziliak, R. Stephanie Huang

Cancer Res (2012) 72 (8_Supplement): 1643.

https://doi.org/10.1158/1538-7445.AM2012-1643

Published: 15 April 2012

View article titled, Abstract 1643: MicroRNA processing genes and implications for complex traits

Journal Articles

Abstract 4766: The use of deuterium isotope effects to shift the partitioning of cyclophosphamide and ifosfamide among competing, P450-dependent, oxidative pathways

Susan M. Ludeman, Michael A. D'Alessandro, R Stephanie Huang, Ivan Spasojevic, M Eileen Dolan

Cancer Res (2012) 72 (8_Supplement): 4766.

https://doi.org/10.1158/1538-7445.AM2012-4766

Published: 15 April 2012

View article titled, Abstract 4766: The use of deuterium isotope effects to shift the partitioning of cyclophosphamide and ifosfamide among competing, P450-dependent, oxidative pathways

Journal Articles

Abstract 4731: Population specific microRNA expression and biological implications

R. Stephanie Huang, Eric R. Gamazon, Dana Ziliak, Wei Zhang, Hae Kyung Im, Claudia Wing, Shiwei Duan, Wasim K. Bleibel, Nancy J. Cox, M. Eileen Dolan

Cancer Res (2011) 71 (8_Supplement): 4731.

https://doi.org/10.1158/1538-7445.AM2011-4731

Published: 15 April 2011

View article titled, Abstract 4731: Population specific microRNA expression and biological implications

Journal Articles

Expression quantitative trait nucleotides in the study of human cancer

Shiwei Duan, R. Stephanie Huang, Wei Zhang, Wasim K. Bleibel, Cheryl A. Roe, Tyson A. Clark, Tina X. Chen, Anthony C. Schweitzer, John E. Blume, Nancy J. Cox, M. Eileen Dolan

Cancer Res (2008) 68 (9_Supplement): 1711.

Published: 01 May 2008

View article titled, Expression quantitative trait nucleotides in the study of human cancer

NARROW

Abstract A041: Development of novel in-vitro mixed-cell models to capture genomic heterogeneity in prostate tumors

Abstract LB067: NF1 deletion potentiates tumorigenesis and activates expression of cancer-related kinases in an iPSC-based model of H3.3K27M diffuse intrinsic pontine glioma

Abstract 994: Investigating inhibition of nuclear export in breast cancer cells

Abstract 6428: Imputing a more selective therapy: Identifying Wee1 and XPO1 inhibitors for TNBC

Abstract 3578: Comprehensive pharmacogenomic analysis establishes lncRNAs as protein-coding independent biomarker of drug response in human cancers

Abstract 5097: Clinical trial outcomes for drug combination therapies can be predicted by modeling independent action using cancer cell line screens

Abstract 3897: Pharmacogenomic landscape of long non-coding RNAs in human cancers

Abstract 4271: Most expression quantitative trait loci discovered in tumors cannot be attributed to cancer cells

Abstract 5035: IDWAS: Imputing drug response in large cohorts of cancer patients to discover novel predictive biomarkers

Abstract 3481: Leveraging protein coding gene expression profiles to accurately impute lncRNA transcriptome of cancer cells

Abstract 2039: Exploring the longitudinal transcriptomic landscape of tyrosine kinase inhibitor treatment response in chronic myeloid leukemia patients

Abstract 2100: Imputation of drug sensitivity levels in The Cancer Genome Atlas using machine learning identifies novel predictors of chemotherapeutic response

Abstract A1-48: Whole genome expression based drug repurposing

Abstract B1-01: Whole genome expression based drug repurposing

Abstract 5561: Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines

Abstract 3636: Systems biology approach links genetic, epigenetic, and transcriptomic features to tamoxifen sensitivity.

Abstract 1643: MicroRNA processing genes and implications for complex traits

Abstract 4766: The use of deuterium isotope effects to shift the partitioning of cyclophosphamide and ifosfamide among competing, P450-dependent, oxidative pathways

Abstract 4731: Population specific microRNA expression and biological implications

Expression quantitative trait nucleotides in the study of human cancer

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