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Journal Articles

Abstract PO-053: MYC Influences metastatic heterogeneity in pancreatic cancer

Ravikanth Maddipati, Robert J. Norgard, Timour Baslan, Komal S. Rathi, Amy Zhang, Pichai Raman, Max D. Wengyn, Taiji Yamazoe, Jinyang Li, David Balli, Michael J. LaRiviere, Ian W. Folkert, Ian D. Millstein, Jonathan Bermeo, Erica L. Carpenter, Scott Lowe, Christine Iacobuzio-Donahue, Faiyaz Notta, Ben Z. Stanger
Journal: Cancer Research
Cancer Res (2020) 80 (22_Supplement): PO-053.
DOI: https://doi.org/10.1158/1538-7445.PANCA20-PO-053
Published: 13 November 2020
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Journal Articles

Abstract PO-071: MYC influences metastatic heterogeneity in pancreatic cancer

Ravikanth Maddipati, Robert J. Norgard, Timour Baslan, Komal S. Rathi, Amy Zhang, Pichai Raman, Max D. Wengyn, Taiji Yamazoe, Jinyang Li, David Balli, Michael LaRiviere, Ian W. Folkert, Ian D. Millstein, Jonathan Bermeo, Erica L. Carpenter, Scott Lowe, Christine Iacobuzio-Donahue, Faiyaz Notta, Ben Z. Stanger
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-071.
DOI: https://doi.org/10.1158/1538-7445.TUMHET2020-PO-071
Published: 03 November 2020
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Journal Articles

Abstract 445: Integrated proteogenomic characterization across seven histological types of pediatric brain tumors

Francesca Petralia, Nicole Tignor, Boris Reva, Pichai Raman, Shrabanti Chowdhury, Dmitry Rykunov, Azra Krek, Weiping Ma, Jiayi Ji, Xiaoyu Song, Yuankun Zhu, Jo Lynne Rokita, Antonio Colaprico, Anna Calinawan, Jeffrey R. Whiteaker, Richard G. Ivey, Zeynep Gumus, Selim Kalayci, Gonzalo L. Garcia, Seungyeul Yoo, Lizabeth Katsnelson, Ying Wang, Jacob J. Kennedy, Uliana J. Voytovich, Lei Zhao, Felipe Leprevost, Hui-Yin Chang, Krutika S. Gaonkar, Elizabeth M. Appert, Ximena Cuellar, Jena Lilly, Jun Zhu, Eric E. Schadt, Medhi Mesri, Emily Boja, Tara Hiltka, Henry Rodriguez, Li Ding, Antonio Iavarone, Maciej Wiznerowicz, Alexey I. Nesvizhskii, David Fenyo, Steven Gygi, Amanda Paulovich, Adam C. Resnick, Phillip B. Storm, Brian Rood, Pei Wang, Children's Brain Tumor Tissue Consortium and Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 445.
DOI: https://doi.org/10.1158/1538-7445.AM2020-445
Published: 15 August 2020
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Journal Articles

Abstract PR06: The immunogenomic landscape of pediatric primary solid tumors

Arash Nabbi, Pengbo Sun, Sudhaman Sumedha, Kelsey Zhu, S.Y. Cindy Yang, Joseph N. Paulson, Marcel Kool, Komal Rathi, Karthik Kalletla, Pichai Raman, Yuankun Zhu, Adam C. Resnick, David T.W. Jones, Natalie Jäger, Stefan M. Pfister, Trevor J. Pugh
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): PR06.
DOI: https://doi.org/10.1158/1538-7445.PEDCA19-PR06
Published: 15 July 2020
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Journal Articles

Abstract 2891: Landscape of infiltrating immune repertoire in pediatric solid tumors

Arash Nabbi, Natalie Jäger, Sumedha Sudhaman, Pengbo Sun, S. Y. Cindy Yang, Kelsey Zhu, Marcel Kool, Komal Rathi, Karthik Kalletla, Pichai Raman, Yuankun Zhu, Joseph N. Paulson, David T. Jones, Uri Tabori, Adam C. Resnick, Stefan M. Pfister, Trevor J. Pugh
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2891.
DOI: https://doi.org/10.1158/1538-7445.AM2019-2891
Published: 01 July 2019
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Journal Articles

Abstract 3650: Integrative mass spectrometry and RNA-sequencing identifies DLK1 as a candidate immunotherapeutic target in neuroblastoma

Amber K. Weiner, Alexander B. Radaoui, Nathan M. Kendsersky, Jo Lynne Harenza-Rokita, Simone Sidoli, Karina L. Conkrite, Zalman Vaksman, Komal Rathi, Pichai Raman, Daniel Martinez, Tricia Bhatti, Matthew Tsang, Bruce Pawel, Benjamin A. Garcia, John M. Maris, Sharon J. Diskin
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3650.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3650
Published: 01 July 2019
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Journal Articles

Abstract 3667: The Pediatric Brain Tumor Atlas - Transforming the landscape of research

Yuankun Zhu, Yiran Guo, Allison P. Heath, Pichai Raman, Elizabeth Appert, Jennifer Mason, Bo Zhang, Karthik Kalletla, Miguel A. Brown, Natasha Singh, Bailey K. Farrow, Parimala Killada, Meen Chul Kim, Alex Felmeister, Mateusz P. Koptyra, Sabine Mueller, Michael Prados, Jena V. Lilly, Rishi Lulla, Adam C. Resnick, Javad Nazarian, Phillip B. Storm, Angela J. Waanders
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3667.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3667
Published: 01 July 2019
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Journal Articles

Abstract 2464: Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research

Allison P. Heath, Deanne M. Taylor, Yuankun Zhu, Pichai Raman, Jena Lilly, Phillip Storm, Angela J. Waanders, Vincent Ferretti, Christina Yung, Michele Mattioni, Brandi Davis-Dusenbery, Zachary L. Flamig, Robert Grossman, Samuel L. Volchenboum, Sabine Mueller, Javad Nazarian, Nicole Vasilevsky, Melissa A. Haendel, Adam Resnick
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2464.
DOI: https://doi.org/10.1158/1538-7445.AM2019-2464
Published: 01 July 2019
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Journal Articles

Abstract 2465: Genomic harmonization of the Data Resource Center for Gabriella Miller Kids First Pediatric Research Program

Yuankun Zhu, Miguel Brown, Batsal Devkota, Bailey Farrow, Bogdan Gavrilovic, Allison Heath, Kyle Hernandez, Avi Kelman, Parimala Killada, Meen Chul Kim, Daniel Kolbman, Mateusz Koptyra, Milan Kovacevic, Maarten Leerkes, Alex Lubneuski, Michele Mattioni, Pichai Raman, Adam Resnick, Nikola Skundric, Deanne Taylor, Junjun Zhang, Bo Zhang, Phillip B. Storm
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2465.
DOI: https://doi.org/10.1158/1538-7445.AM2019-2465
Published: 01 July 2019
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Journal Articles

Abstract 3356: Working together to put kids first: Outreach strategies driving collaborative research, data sharing and cross-disease analysis to accelerate discoveries in pediatric cancer and structural birth defects

Tatiana S. Patton, Robert Moulder, Erin Alexander, Donna Vito, Jonathan Waller, Colleen Gaynor, Sarah Thomas, Bailey Farrow, Joseph Yamada, Kim Cullion, Danyelle Winchester, Angela Waanders, Allison Heath, Pichai Raman, Adam Resnick, Jena Lilly
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3356.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3356
Published: 01 July 2019
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Journal Articles

Abstract 910: The cBioPortal for cancer genomics

Jianjiong Gao, Tali Mazor, Adam Abeshouse, Ersin Ciftci, Ino de Bruijn, Benjamin Gross, Karthik Kalletla, Priti Kumari, Ritika Kundra, James Lindsay, Aaron Lisman, Pieter Lukasse, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Pichai Raman, Fedde Schaeffer, Robert Sheridan, Jing Su, S. Onur Sumer, Yichao Sun, Sander Tan, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Kelsey Zhu, Kees van Bochove, Ugur Dogrusoz, Trevor J. Pugh, Adam Resnick, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 910.
DOI: https://doi.org/10.1158/1538-7445.AM2019-910
Published: 01 July 2019
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Journal Articles

Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data

Jianjiong Gao, Tali Mazor, Ersin Ciftci, Pichai Raman, Pieter Lukasse, Istemi Bahceci, Alexandros Sigaras, Adam Abeshouse, Ino de Bruijn, Benjamin Gross, Ritika Kundra, Aaron Lisman, Angelica Ochoa, Robert Sheridan, Jing Su, Selcuk O. Sumer, Yichao Sun, Avery Wang, Jiaojiao Wang, Manda Wilson, Hongxin Zhang, Priti Kumari, James Lindsay, Karthik Kalletla, Kelsey Zhu, Oleguer Plantalech, Fedde Schaeffer, Sander Tan, Dionne Zaal, Sjoerd van Hagen, Kees van Bochove, Ugur Dogrusoz, Trevor J. Pugh, Adam Resnick, Chris Sander, Nikolaus Schultz, Ethan Cerami
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 923.
DOI: https://doi.org/10.1158/1538-7445.AM2018-923
Published: 01 July 2018
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Journal Articles

Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud

Adam C. Resnick, Phillip B. Storm, Angela J. Waanders, Jena V. Lilly, Rishi R. Lulla, Sabine Mueller, Michael Prados, Leonard S. Sender, Allison Heath, Alex S. Felmeister, Anthony Cros, Yuankun Zhu, Pichai Raman
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-008.
DOI: https://doi.org/10.1158/1538-7445.AM2017-LB-008
Published: 01 July 2017
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Journal Articles

Abstract 685: GPC2 is an oncogene and immunotherapeutic target in high-risk neuroblastoma

Kristopher R. Bosse, Pichai Raman, Maria Lane, Robyn T. Sussman, Jo Lynne Harenza, Daniel Martinez, Sabine Heitzeneder, Zhongyu Zhu, Komal Rathi, Michael Randall, Laura Donovan, Sorana Morrissy, Doncho V. Zhelev, Yang Feng, Jennifer Hwang, Yanping Wang, Bruce Pawel, Tricia Bhatti, Mariarita Santi, Javed Khan, Michael Taylor, Dimiter S. Dimitrov, Crystal Mackall, John M. Maris
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 685.
DOI: https://doi.org/10.1158/1538-7445.AM2017-685
Published: 01 July 2017
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Journal Articles

Abstract 2607: The cBioPortal for Cancer Genomics: an open source platform for accessing and interpreting complex cancer genomics data in the era of precision medicine

Jianjiong Gao, Ersin Ciftci, Pichai Raman, Pieter Lukasse, Istemi Bahceci, Adam Abeshouse, Hsiao-Wei Chen, Ino de Bruijn, Benjamin Gross, Zachary Heins, Ritika Kundra, Aaron Lisman, Angelica Ochoa, Robert Sheridan, Onur Sumer, Yichao Sun, Jiaojiao Wang, Manda Wilson, Hongxin Zhang, James Xu, Andy Dufilie, Priti Kumari, James Lindsay, Anthony Cros, Karthik Kalletla, Fedde Schaeffer, Sander Tan, Sjoerd van Hagen, Jorge Reis-Filho, Kees van Bochove, Ugur Dogrusoz, Trevor Pugh, Adam Resnick, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2607.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2607
Published: 01 July 2017
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Journal Articles

Abstract 3000: Defining the subclonal landscape of high-risk neuroblastoma

Jo Lynne Harenza, Maura A. Diamond, Derek A. Oldridge, Olivia Padovan-Merher, Pichai Raman, Yael P. Mosse, John M. Maris
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3000.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3000
Published: 01 July 2017
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Journal Articles

Abstract 2431: Enrichment of targetable mutations in the relapsed neuroblastoma genome

Olivia M. Padovan-Merhar, Pichai Raman, Kaitlyn R. Rubnitz, Siraj M. Ali, Vincent A. Miller, Yael P. Mosse, Meaghan P. Granger, Brian D. Weiss, John M. Maris, Shakeel Modak
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2431.
DOI: https://doi.org/10.1158/1538-7445.AM2016-2431
Published: 15 July 2016
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Journal Articles

Abstract LB-126: The identification of synthetic lethal partners cooperating with MEK1/2 inhibition in neuroblastoma

Lori S. Hart, Pichai Raman, Grace Coggins, JulieAnn Rader, John M. Maris
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): LB-126.
DOI: https://doi.org/10.1158/1538-7445.AM2016-LB-126
Published: 15 July 2016
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Journal Articles

Abstract PR02: GPC2 is a candidate immunotherapeutic target and putative oncogene in high-risk neuroblastoma and other pediatric cancers

Kristopher R. Bosse, Pichai Raman, Robyn T. Sussman, Michael Randall, Dan Martinez, Zhongyu Zhu, Bruce Pawel, Tricia Bhatti, Javed Khan, Dimiter S. Dimitrov, Crystal Mackall, John M. Maris
Journal: Cancer Research
Cancer Res (2016) 76 (5_Supplement): PR02.
DOI: https://doi.org/10.1158/1538-7445.PEDCA15-PR02
Published: 04 April 2016
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Journal Articles

CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus

Mike R. Russell, Annalise Penikis, Derek A. Oldridge, Juan R. Alvarez-Dominguez, Lee McDaniel, Maura Diamond, Olivia Padovan, Pichai Raman, Yimei Li, Jun S. Wei, Shile Zhang, Janahan Gnanchandran, Robert Seeger, Shahab Asgharzadeh, Javed Khan, Sharon J. Diskin, John M. Maris, Kristina A. Cole
Journal: Cancer Research
Cancer Res (2015) 75 (15): 3155–3166.
DOI: https://doi.org/10.1158/0008-5472.CAN-14-3613
Published: 02 August 2015
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Includes: Supplementary data