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Peter W. Laird
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Journal Articles

Abstract 6548: Leveraging compact feature sets for TCGA-based molecular subtype classification on new samples

Kyle Ellrott, Chris K. Wong, Christina Yau, Mauro A. Castro, Jordan Lee, Brian Karlberg, Jasleen K. Grewal, Vincenzo Lagani, Bahar Tercan, Verena Friedl, Toshinori Hinoue, Vladislav Uzunangelov, Lindsay Westlake, Xavier Loinaz, Ina Felau, Peggy Wang, Anab Kemal, Samantha J. Caesar-Johnson, Ilya Shmulevich, Alexander J. Lazar, Ioannis Tsamardinos, Katherine A. Hoadley, The Cancer Genome Atlas Analysis Network, Gordon A. Robertson, Theo A. Knijnenburg, Christopher C. Benz, Joshua M. Stuart, Jean C. Zenklusen, Andrew D. Cherniack, Peter W. Laird
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6548.
https://doi.org/10.1158/1538-7445.AM2024-6548
Published: 22 March 2024
View article titled, Abstract 6548: Leveraging compact feature sets for TCGA-based molecular subtype classification on new samples
Journal Articles

Abstract IA023: Spatial reconstruction and temporal inference of DNA methylation alterations in primary human colorectal cancer

Peter W. Laird, Nathan J. Spix, Hsiao-yun Milliron, Manpreet Kalkat, Emily Eugster, David Sokol, Emily Jung, Paula Nolte, Kelly K. Krzyzanowski, Toshinori Hinoue, Hui Shen
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): IA023.
https://doi.org/10.1158/1538-7445.CANEVOL23-IA023
Published: 01 February 2024
View article titled, Abstract IA023: Spatial reconstruction and temporal inference of DNA methylation alterations in primary human colorectal cancer
Journal Articles

Abstract B033: Mapping subclonal epigenetic evolution in colorectal cancer by spatial analysis of DNA hypermethylation

Nathan J. Spix, Hsiao-yun Milliron, Manpreet Kalkat, Emily Eugster, David W. Chesla, David Sokol, Emily Jung, Paula Nolte, Kelly K. Krzyzanowski, Toshinori Hinoue, Hui Shen, Peter W. Laird
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): B033.
https://doi.org/10.1158/1538-7445.CANEVOL23-B033
Published: 01 February 2024
View article titled, Abstract B033: Mapping subclonal epigenetic evolution in colorectal cancer by spatial analysis of DNA hypermethylation
Journal Articles

DAB2IP Is a Bifunctional Tumor Suppressor That Regulates Wild-Type RAS and Inflammatory Cascades in KRAS Mutant Colon Cancer

Abigail L. Miller, Naiara Perurena, Alycia Gardner, Toshinori Hinoue, Patrick Loi, Peter W. Laird, Karen Cichowski
Journal: Cancer Research
Cancer Res (2023) 83 (11): 1800–1814.
https://doi.org/10.1158/0008-5472.CAN-22-0370
Published: 02 June 2023
View article titled, DAB2IP Is a Bifunctional Tumor Suppressor That Regulates Wild-Type RAS and Inflammatory Cascades in KRAS Mutant Colon Cancer
Open the PDF for DAB2IP Is a Bifunctional Tumor Suppressor That Regulates Wild-Type RAS and Inflammatory Cascades in KRAS Mutant Colon Cancer in another window
Includes: Supplementary data
Journal Articles

High-Resolution Profiling of Lung Adenocarcinoma Identifies Expression Subtypes with Specific Biomarkers and Clinically Relevant Vulnerabilities

Whijae Roh, Yifat Geffen, Hongui Cha, Mendy Miller, Shankara Anand, Jaegil Kim, David I. Heiman, Justin F. Gainor, Peter W. Laird, Andrew D. Cherniack, Chan-Young Ock, Se-Hoon Lee, Gad Getz, for the National Cancer Institute Center for Cancer Genomics Tumor Molecular Pathology (TMP) Analysis Working Group
Journal: Cancer Research
Cancer Res (2022) 82 (21): 3917–3931.
https://doi.org/10.1158/0008-5472.CAN-22-0432
Published: 02 November 2022
View article titled, High-Resolution Profiling of Lung Adenocarcinoma Identifies Expression Subtypes with Specific Biomarkers and Clinically Relevant Vulnerabilities
Open the PDF for High-Resolution Profiling of Lung Adenocarcinoma Identifies Expression Subtypes with Specific Biomarkers and Clinically Relevant Vulnerabilities in another window
Includes: Supplementary data
Journal Articles

Abstract LB176: Multiplatform analysis of matched primary and metastatic breast tumors from the AURORA US Network identifies microenvironment features as drivers of metastasis

Susana Garcia Recio, Toshinori Hinoue, Gregory L. Wheeler, Benjamin J. Kelly, Justin M. Balko, Katherine A. Hoadley, Peter W. Laird, Elaine R. Mardis, Charles M. Perou
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): LB176.
https://doi.org/10.1158/1538-7445.AM2022-LB176
Published: 15 June 2022
View article titled, Abstract LB176: Multiplatform analysis of matched primary and metastatic breast tumors from the AURORA US Network identifies microenvironment features as drivers of metastasis
Journal Articles

Abstract GS3-08: Multiplatform analysis of matched primary and metastatic breast tumors from the AURORA US Network

Tari A King, Minetta C Liu, Marni B McClure, Toshinori Hinoue, Benjamin J Kelly, Chad J Creighton, Jay Bowen, Kristen Leraas, Robyn T Burns, Sara Coppens, Salma Rezk, Amy L Garrett, Justin M Balko, Joel S Parker, Ben H Park, Ian Krop, Carey Anders, Katherine A Hoadley, Julie Gastier-Foster, Mothaffar F Rimawi, Rita Nanda, Nancy U Lin, Claudine Isaacs, P. Kelly Marcom, Anna Maria Storniolo, Fergus J Couch, Elaine R Mardis, Adrian V Lee, Uma Chandran, Peter W Laird, Susan G Hilsenbeck, Larry Norton, Andrea L Richardson, W. Fraser Symmans, Lisa A Carey, Antonio C Wolff, Nancy E Davidson, Charles M Perou, the AURORA US Network
Journal: Cancer Research
Cancer Res (2020) 80 (4_Supplement): GS3-08.
https://doi.org/10.1158/1538-7445.SABCS19-GS3-08
Published: 15 February 2020
View article titled, Abstract GS3-08: Multiplatform analysis of matched primary and metastatic breast tumors from the AURORA US Network
Journal Articles

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Francisco Sanchez-Vega, Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor La, Sofia Dimitriadoy, David L. Liu, Havish S. Kantheti, Zachary Heins, Angelica Ochoa, Benjamin Gross, Jianjiong Gao, Hongxin Zhang, Ritika Kundra, Cyriac Kandoth, Istemi Bahceci, Leonard Dervishi, Ugur Dogrusoz, Wanding Zhou, Hui Shen, Peter W. Laird, Alice H. Berger, Trever G. Bivona, Alexander J. Lazar, Gary Hammer, Thomas Giordano, Lawrence Kwong, Grant McArthur, Chenfei Huang, Mitchell J. Frederick, Frank McCormick, Matthew Meyerson, The Cancer Genome Atlas Research Network, Eliezer Van Allen, Andrew D. Cherniack, Giovanni Ciriello, Chris Sander, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3302.
https://doi.org/10.1158/1538-7445.AM2018-3302
Published: 01 July 2018
View article titled, Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas
Journal Articles

Abstract 5312: The effect of Dnmt1 overexpression on intestinal tumorigenesis

Nicole A. Vander Schaaf, JinA Park, Oluwasei Dina, KwangHo Lee, Peter W. Laird
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5312.
https://doi.org/10.1158/1538-7445.AM2018-5312
Published: 01 July 2018
View article titled, Abstract 5312: The effect of <em>Dnmt1</em> overexpression on intestinal tumorigenesis
Journal Articles

Abstract 5327: DNA methylation loss in late-replicating domains is linked to mitotic cell division

Wanding Zhou, Huy Q. Dinh, Zachary Ramjan, Daniel J. Weisenberger, Charles M. Nicolet, Hui Shen, Peter W. Laird, Benjamin P. Berman
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5327.
https://doi.org/10.1158/1538-7445.AM2018-5327
Published: 01 July 2018
View article titled, Abstract 5327: DNA methylation loss in late-replicating domains is linked to mitotic cell division
Journal Articles

Abstract LB-373: Comprehensive analysis of cancer stemness

Tathiane M. Malta, Artem Sokolov, Andrew J. Gentles, Tomasz Burzykowski, Laila Poisson, John Weinstein, Bożena Kamińska, Joerg Huelsken, Larsson Omberg, Olivier Gevaert, Antonio Colaprico, Patrycja Czerwińska, Sylwia Mazurek, Lopa Mishra, Holger Heyn, Alex Krasnitz, Andrew K. Godwin, Alexander J. Lazar, The Cancer Genome Atlas Research Network, Joshua M. Stuart, Katherine Hoadley, Peter W. Laird, Houtan Noushmehr, Maciej Wiznerowicz
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): LB-373.
https://doi.org/10.1158/1538-7445.AM2018-LB-373
Published: 01 July 2018
View article titled, Abstract LB-373: Comprehensive analysis of cancer stemness
Journal Articles

Abstract LB-004: Molecular hallmarks of cancer: Stemness

Tathiane Malta, Artem Sokolov, Andrew J. Gentles, Tomasz Burzykowski, Olivier Gevaert, The Stemness Analysis Working Group TCGA PanCancerNetwork, Peter W. Laird, Houtan Noushmehr, Maciej Wiznerowicz
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-004.
https://doi.org/10.1158/1538-7445.AM2017-LB-004
Published: 01 July 2017
View article titled, Abstract LB-004: Molecular hallmarks of cancer: Stemness
Journal Articles

Abstract 5381: A highly sensitive method for noninvasive cancer profiling through targeted methylation sequencing of circulating cell-free DNA

Li Liu, Jonathan M. Toung, Raakhee Vijayaraghavan, Ruoyu Zhang, Helen J. Huang, Toshinori Hinoue, Hui Shen, Neeraj Salathia, Marina Bibikova, Richard Shen, Karen Gutekunst, Peter W. Laird, Filip Janku, Jian-Bing Fan
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5381.
https://doi.org/10.1158/1538-7445.AM2017-5381
Published: 01 July 2017
View article titled, Abstract 5381: A highly sensitive method for noninvasive cancer profiling through targeted methylation sequencing of circulating cell-free DNA
Journal Articles

Abstract 128: Comprehensive molecular characterization of 412 muscle-invasive urothelial bladder carcinomas: final analysis of The Cancer Genome Atlas (TCGA) project

John N. Weinstein, Seth P. Lerner, David J. Kwiatkowski, Gad Getz, Jaegil Kim, Hikmat A. Al-ahmadie, Andrew D. Cherniack, Guangwu Guo, Rehan Akbani, Katherine A. Hoadley, William Y. Kim, Gordon Robertson, Andrew J. Mungall, Toshinori Hinoue, Peter W. Laird, Jonathan E. Rosenberg, Joaquim Bellmunt, Dean F. Bajorin, Margaret B. Morgan, Chad J. Creighton, Dmitry Gordenin, Joshua M. Stuart, Xiaoping Su, Michael C. Ryan, Jeffrey S. Damrauer, Wei Zhang, Yuexin Liu, Yiling Lu, Nikolaus Schultz, Raju Kucherlapati, Gordon B. Mills, Donna E. Hansel, Brian D. Robinson, Bodgen A. Czerniak, Victor E. Reuter
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 128.
https://doi.org/10.1158/1538-7445.AM2016-128
Published: 15 July 2016
View article titled, Abstract 128: Comprehensive molecular characterization of 412 muscle-invasive urothelial bladder carcinomas: final analysis of The Cancer Genome Atlas (TCGA) project
Journal Articles

Abstract 2969: Progress in The Cancer Genome Atlas bladder cancer project

John N. Weinstein, Jaegil Kim, Chad J. Creighton, Rehan Akbani, Katherine A. Hoadley, William Y. Kim, Margaret B. Morgan, Toshinori Hinoue, Andrew Cherniack, Xiaoping Su, Andrew J. Mungall, Michael C. Ryan, Dean F. Bajorin, Jonathan E. Rosenberg, Bogdan Czerniak, Donna Hansel, Victor E. Reuter, Brian D. Robinson, Hikmat A. Al-Ahmadie, Jeffrey S. Damrauer, Wei Zhang, Yuexin Liu, Dmitry R. Gordenin, Joshua M. Stuart, Nikolaus Schultz, Gordon Robertson, Steven JM Jones, Raju R. Kucherlapati, David J. McConkey, Peter W. Laird, Gordon B. Mills, David J. Kwiatkowski, Seth P. Lerner, TCGA Bladder Cancer Working Group, TCGA Research Network
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 2969.
https://doi.org/10.1158/1538-7445.AM2015-2969
Published: 01 August 2015
View article titled, Abstract 2969: Progress in The Cancer Genome Atlas bladder cancer project
Journal Articles

Abstract 3288: The KCNA5 promoter is hypermethylated in Ewing sarcoma and silencing contributes to cell proliferation

Katherine Ryland, Allegra Hawkins, Daniel J. Weisenberger, Scott Borinstein, Peter W. Laird, Jeffrey R. Martens, Elizabeth R. Lawlor
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 3288.
https://doi.org/10.1158/1538-7445.AM2015-3288
Published: 01 August 2015
View article titled, Abstract 3288: The KCNA5 promoter is hypermethylated in Ewing sarcoma and silencing contributes to cell proliferation
Journal Articles

Abstract S2-04: Comprehensive molecular characterization of invasive lobular breast tumors

Giovanni Ciriello, Michael L Gatza, Katherine A Hoadley, Hailei Zhang, Suhn K Rhie, Reanne Bowlby, Matthew D Wilkerson, Cyriac Kandoth, Michael McLellan, Andrew Cherniack, Peter W Laird, Chris Sander, Tari A King, Charles M Perou
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): S2-04.
https://doi.org/10.1158/1538-7445.SABCS14-S2-04
Published: 01 May 2015
View article titled, Abstract S2-04: Comprehensive molecular characterization of invasive lobular breast tumors
Journal Articles

Abstract 984: Alteration of the p53 pathway is associated with subclonal tumor progression in glioblastoma

Hoon Kim, Siyuan Zheng, Seyed S. Amini, Selene M. Virk, Tom Mikkelsen, Daniel J. Brat, Jonna Grimsby, Carrie Sougnez, Andrew E. Sloan, Mark L. Cohen, Erwin G. Van Meir, Lisa Scarpace, The Cancer Genome Research Network, Peter W. Laird, John N. Weinstein, Eric Lander, Stacey Gabriel, Gad Getz, Matthew Meyerson, Lynda Chin, Jill S. Barnholtz-Sloan, Roel G.w. Verhaak
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 984.
https://doi.org/10.1158/1538-7445.AM2014-984
Published: 01 October 2014
View article titled, Abstract 984: Alteration of the p53 pathway is associated with subclonal tumor progression in glioblastoma
Journal Articles

Abstract 987: Comprehensive characterization of urothelial bladder cancer: a TCGA Project update

John N. Weinstein, Jaegil Kim, Chad J. Creighton, Rehan Akbani, Katherine A. Hoadley, William Y. Kim, Margaret B. Morgan, Toshinori Hinoue, Andrew Cherniack, Xiaoping Su, Andrew J. Mungall, Michael C. Ryan, Jonathan E. Rosenberg, Dean F. Bajorin, Bogdan Czerniak, Donna Hansel, Victor E. Reuter, Brian D. Robinson, Hikmat A. Al-Ahmadie, Jeffrey S. Damrauer, Wei Zhang, Yuexin Liu, Dmitry Gordenin, Joshua M. Stuart, Nikolaus Schultz, Gordon Robertson, Raju Kucherlapati, Peter W. Laird, Gordon B. Mills, David J. Kwiatkowski, Seth P. Lerner, representing TCGA's Bladder Cancer Working Group
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 987.
https://doi.org/10.1158/1538-7445.AM2014-987
Published: 01 October 2014
View article titled, Abstract 987: Comprehensive characterization of urothelial bladder cancer: a TCGA Project update
Journal Articles

Abstract PL02-01: Cancer genetic and epigenetic interactions.

Peter W. Laird
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): PL02-01.
https://doi.org/10.1158/1538-7445.AM2013-PL02-01
Published: 15 April 2013
View article titled, Abstract PL02-01: Cancer genetic and epigenetic interactions.