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Paul Geeleher
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Journal Articles

Abstract 1907: Combocat: A high-throughput framework for drug combination studies

William C. Wright, Min Pan, Hyeong-Min Lee, Gregory A. Phelps, Jonathan Low, Duane Currier, Richard E. Lee, Taosheng Chen, Paul Geeleher
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1907.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1907
Published: 15 June 2022
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Abstract 456: Jointly leveraging spatial transcriptomics and deep learning models for image annotation achieves better-than-pathologist performance in cell type identification in tumors

Asif Zubair, Rich Chapple, Sivaraman Natarajan, William C. Wright, Min Pan, Hyeong-Min Lee, Heather Tillman, John Easton, Paul Geeleher
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 456.
DOI: https://doi.org/10.1158/1538-7445.AM2022-456
Published: 15 June 2022
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Abstract 4075: Meta-analysis of neuroblastoma single cell RNA-seq datasets identifies conserved and divergent gene expression programs across human and preclinical models

Richard Chapple, Charlie Wright, Min Pan, Paul Geeleher
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 4075.
DOI: https://doi.org/10.1158/1538-7445.AM2022-4075
Published: 15 June 2022
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Abstract 3578: Comprehensive pharmacogenomic analysis establishes lncRNAs as protein-coding independent biomarker of drug response in human cancers

Aritro Nath, Eunice Y. Lau, Adam M. Lee, Paul Geeleher, William C. Cho, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3578.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3578
Published: 01 July 2019
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Abstract 4271: Most expression quantitative trait loci discovered in tumors cannot be attributed to cancer cells

Paul Geeleher, Fan Wang, Zheny Zhang, Robert L. Grossman, Cathal Seoighe, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4271.
DOI: https://doi.org/10.1158/1538-7445.AM2018-4271
Published: 01 July 2018
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Journal Articles

Abstract 3481: Leveraging protein coding gene expression profiles to accurately impute lncRNA transcriptome of cancer cells

Aritro Nath, Paul Geeleher, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3481.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3481
Published: 01 July 2017
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Abstract 5035: IDWAS: Imputing drug response in large cohorts of cancer patients to discover novel predictive biomarkers

Paul Geeleher, Zhenyu Zhang, Fan Wang, Aritro Nath, Steven Bhutra, Robert Grossman, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5035.
DOI: https://doi.org/10.1158/1538-7445.AM2017-5035
Published: 01 July 2017
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Abstract 2039: Exploring the longitudinal transcriptomic landscape of tyrosine kinase inhibitor treatment response in chronic myeloid leukemia patients

Aritro Nath, Fan Wang, Divya Lenkala, Bonnie LaCroix, Nancy Glavin, Kristen Kipping-Johnson, Paul Geeleher, Michael Thirman, Lucy Godley, Gordana Raca, Richard Larson, R. Stephanie Huang.
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2039.
DOI: https://doi.org/10.1158/1538-7445.AM2016-2039
Published: 15 July 2016
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Abstract 2100: Imputation of drug sensitivity levels in The Cancer Genome Atlas using machine learning identifies novel predictors of chemotherapeutic response

Paul Geeleher, R. Stephanie Huang, Fan Wang, Gladys Morrison
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2100.
DOI: https://doi.org/10.1158/1538-7445.AM2016-2100
Published: 15 July 2016
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Abstract A1-48: Whole genome expression based drug repurposing

Paul Geeleher, Steven Bhutra, Jacqueline Wang, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_1): A1-48.
DOI: https://doi.org/10.1158/1538-7445.TRANSCAGEN-A1-48
Published: 15 November 2015
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Abstract B1-01: Whole genome expression based drug repurposing

Paul Geeleher, Steven Bhutra, Jacqueline Wang, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_2): B1-01.
DOI: https://doi.org/10.1158/1538-7445.COMPSYSBIO-B1-01
Published: 15 November 2015
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Abstract 2746: An evaluation of poly (ADP-ribose) polymerase inhibitor efficacy in head and neck cancer

Jana Heitmann, Paul Geeleher, Michaela Keck, Zhixiang Zuo, Arun Khattri, Susanne Tepper, Michael Beckett, Ralph R. Weichselbaum, Sebastian Fetscher, Everett E. Vokes, Tanguy Seiwert
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 2746.
DOI: https://doi.org/10.1158/1538-7445.AM2014-2746
Published: 01 October 2014
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Abstract 5561: Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines

Paul Geeleher, Nancy Cox, R. Stephanie Huang
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 5561.
DOI: https://doi.org/10.1158/1538-7445.AM2014-5561
Published: 01 October 2014
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