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Paul C. Boutros
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Journal Articles

Abstract IA018: The evolutionary origins of cancer lethality

Free
Paul C Boutros
Journal: Cancer Research
Cancer Res (2025) 85 (5_Supplement): IA018.
https://doi.org/10.1158/1538-7445.GENFUNC25-IA018
Published: 11 March 2025
View articletitled, Abstract IA018: The evolutionary origins of cancer lethality
Journal Articles

Abstract 3580: Understanding and overcoming innate and acquired resistance to type I and II RAF inhibitors in anaplastic thyroid cancer using translational functional genomics

Free
Peter Zeng, Jalna Meens, John Barrett, Matthew J. Cecchini, Sarah B. Ryan, Nachuan Pan, Amir Karimi, Laura Jarycki, Alice E. Dawson, Mushfiq Shaikh, David Palma, Eric Winquist, Paul C. Boutros, Laurie Ailles, Anthony C. Nichols
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3580.
https://doi.org/10.1158/1538-7445.AM2024-3580
Published: 22 March 2024
View articletitled, Abstract 3580: Understanding and overcoming innate and acquired resistance to type I and II RAF inhibitors in anaplastic thyroid cancer using translational functional genomics
Journal Articles

Abstract 1274: Investigating PLOD2 as a therapeutic target to overcome metastasis in radiorecurrent prostate cancer

Free
Gavin Frame, Hon Leong, Roni Haas, Xiaoyong Huang, Jessica Wright, Paul C. Boutros, Thomas Kislinger, Stanley K. Liu
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1274.
https://doi.org/10.1158/1538-7445.AM2024-1274
Published: 22 March 2024
View articletitled, Abstract 1274: Investigating PLOD2 as a therapeutic target to overcome metastasis in radiorecurrent prostate cancer
Journal Articles

Abstract 1627: Persistence and dynamics of mutation, selection, and epistasis during the somatic evolution of low-risk, high-risk, and metastatic prostate cancer

Free
Moein Rajaei, Alexander Yang, Christopher N. Cross, J Nick Fisk, Elizabeth B. Perry, Jeffrey D. Mandell, Stephen G. Gaffney, Takafumi N. Yamaguchi, Julie Livingstone, Vincent L. Cannataro, Peter Humphrey, Jose Costa, Paul C. Boutros, Jeffrey P. Townsend
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1627.
https://doi.org/10.1158/1538-7445.AM2024-1627
Published: 22 March 2024
View articletitled, Abstract 1627: Persistence and dynamics of mutation, selection, and epistasis during the somatic evolution of low-risk, high-risk, and metastatic prostate cancer
Journal Articles

Abstract B046: Multimodal biomarkers that predict the presence of Gleason pattern 4: Potential impact for active surveillance

Free
Anna Y. Lee, David M. Berman, Robert Lesurf, Palak G. Patel, Walead Ebrahimizadeh, Jane Bayani, Laura A. Lee, Nadia Boufaied, Shamini Selvarajah, Tamara Jamaspishvili, Karl-Philippe Guérard, Dan Dion, Atsunari Kawashima, Gina M. Clarke, Nathan How, Chelsea L. Jackson, Eleonora Scarlata, Khurram Siddiqui, John B.A. Okello, Armen G. Aprikian, Madeleine Moussa, Antonio Finelli, Joseph Chin, Fadi Brimo, Glenn Bauman, Andrew Loblaw, Vasundara Venkateswaran, Ralph Buttyan, Simone Chevalier, Axel Thomson, Paul C. Park, D. Robert Siemens, Jacques Lapointe, Paul C. Boutros, John M.S. Bartlett
Journal: Cancer Research
Cancer Res (2023) 83 (11_Supplement): B046.
https://doi.org/10.1158/1538-7445.PRCA2023-B046
Published: 02 June 2023
View articletitled, Abstract B046: Multimodal biomarkers that predict the presence of Gleason pattern 4: Potential impact for active surveillance
Journal Articles

Abstract 4284: Enhancing subclonal reconstruction algorithm for resolving complex tumor phylogenies from multi-sample tumor DNA sequencing

Free
Helena Winata, Daniel Knight, Juber A. Patel, Nicholas K. Wang, Pier Selenica, Stefan E. Eng, Caroline Kostrzewa, Jaron Arbet, Yingjie Zhu, Ronglai Shen, Jorge Reis-Filho, Pedram Razafi, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4284.
https://doi.org/10.1158/1538-7445.AM2023-4284
Published: 04 April 2023
View articletitled, Abstract 4284: Enhancing subclonal reconstruction algorithm for resolving complex tumor phylogenies from multi-sample tumor DNA sequencing
Journal Articles

Abstract 932: Snapshot! Exploring sample diversity of sarcoma cancers across common data repositories

Free
Alfredo Enrique Gonzalez, Yash Patel, Chenghao Zhu, Takafumi N. Yamaguchi, Mao Tian, Sarah Hiyari, Ahmad A. Shihabi, Stefan Eng, Helena Winata, Jaron Arbert, Arpi Beshlikyan, Ardalan Davarifar, Alice Soragni, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 932.
https://doi.org/10.1158/1538-7445.AM2023-932
Published: 04 April 2023
View articletitled, Abstract 932: Snapshot! Exploring sample diversity of sarcoma cancers across common data repositories
Journal Articles

Abstract 4305: Germline structural variants shape prostate cancer clinical and molecular evolution

Free
Nicholas K. Wang, Alexandre Rouette, Kathleen E. Houlahan, Takafumi N. Yamaguchi, Julie Livingstone, Chol-Hee Jung, Peter Georgeson, Michael Fraser, Yu-Jia Shiah, Cindy Q. Yao, Vincent Huang, Natalie S. Fox, Natalie Kurganovs, Katayoon Kasaian, Veronica Y. Sabelnykova, Jay Jayalath, Kenneth Weke, Helen Zhu, Theodorus van der Kwast, Tony Papenfuss, Housheng H. He, Niall M. Corcoran, Robert G. Bristow, Alexandre R. Zlotta, Christopher Hovens, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4305.
https://doi.org/10.1158/1538-7445.AM2023-4305
Published: 04 April 2023
View articletitled, Abstract 4305: Germline structural variants shape prostate cancer clinical and molecular evolution
Journal Articles

Abstract 3315: Evaluating biomarker potential of germline genomic factors for predicting clinical outcomes in prostate cancer

Free
Nicole Zeltser, Kathleen E. Houlahan, Sarah M. Al-Hiyari, Stefan E. Eng, Yash Patel, Takafumi N. Yamaguchi, Shu Tao, Rong Rong Huang, Robert E. Reiter, Huihui Ye, Adam S. Kinnaird, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3315.
https://doi.org/10.1158/1538-7445.AM2023-3315
Published: 04 April 2023
View articletitled, Abstract 3315: Evaluating biomarker potential of germline genomic factors for predicting clinical outcomes in prostate cancer
Journal Articles

Abstract 258: Whole genome analysis of hereditary leiomyomatosis and renal cell cancer identifies role of localized hypermutational events

Free
Selina Wu, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 258.
https://doi.org/10.1158/1538-7445.AM2023-258
Published: 04 April 2023
View articletitled, Abstract 258: Whole genome analysis of hereditary leiomyomatosis and renal cell cancer identifies role of localized hypermutational events
Journal Articles

Abstract 3120: Sex differences in pediatric cancer genomics

Free
Jieun Oh, Chenghao Zhu, Nicole Zeltser, Constance H. Li, Brandon L. Tsai, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3120.
https://doi.org/10.1158/1538-7445.AM2023-3120
Published: 04 April 2023
View articletitled, Abstract 3120: Sex differences in pediatric cancer genomics
Journal Articles

Abstract 203: A characterization of drug sensitivity and resistance in sarcoma

Free
Ahmad Al Shihabi, Peyton J. Tebon, Huyen T. Nguyen, Jomjit Chantharasamee, Sara Sartini, Ardalan Davarifar, Alexandra Jensen, Miranda Diaz-Infante, Hannah Cox, Alfredo Gonzalez, Nasrin Tavanaie, Sarah Dry, Arun Singh, Bartosz Chmielowski, Joseph G. Crompton, Anusha Kalbasi, Fritz C. Eilber, Francis J. Hornicek, Nicholas Bernthal, Scott D. Nelson, Paul C. Boutros, Noah Federman, Jane Yanagawa, Alice Soragni
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 203.
https://doi.org/10.1158/1538-7445.AM2023-203
Published: 04 April 2023
View articletitled, Abstract 203: A characterization of drug sensitivity and resistance in sarcoma
Journal Articles

Abstract 3121: Exercise and tumor genomic landscapes in 2,879 patients with cancer

Free
Brandon L. Tsai, Lydia Y. Liu, Stefan E. Eng, Whitney P. Underwood, Catherine P. Lee, Joshua W. Bliss, Paul C. Boutros, Lee W. Jones
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3121.
https://doi.org/10.1158/1538-7445.AM2023-3121
Published: 04 April 2023
View articletitled, Abstract 3121: Exercise and tumor genomic landscapes in 2,879 patients with cancer
Journal Articles

Abstract 196: A platform for rapid patient-derived cutaneous neurofibroma organoid establishment and screening

Free
Huyen T. Nguyen, Emily Kohl, Jessica Bade, Stefan E. Eng, Anela Tosevska, Ahmad Al Shihabi, Jenny J. Hong, Sarah Dry, Paul C. Boutros, Andre Panossian, Sara Gosline, Alice Soragni
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 196.
https://doi.org/10.1158/1538-7445.AM2023-196
Published: 04 April 2023
View articletitled, Abstract 196: A platform for rapid patient-derived cutaneous neurofibroma organoid establishment and screening
Journal Articles

Single-Cell Analysis in Lung Adenocarcinoma Implicates RNA Editing in Cancer Innate Immunity and Patient Prognosis

Available to Purchase
Tracey W. Chan, Jack P. Dodson, Jaron Arbet, Paul C. Boutros, Xinshu Xiao
Journal: Cancer Research
Cancer Res (2023) 83 (3): 374–385.
https://doi.org/10.1158/0008-5472.CAN-22-1062
Published: 03 February 2023
View articletitled, Single-Cell Analysis in Lung Adenocarcinoma Implicates RNA Editing in Cancer Innate Immunity and Patient Prognosis
Open the PDF for Single-Cell Analysis in Lung Adenocarcinoma Implicates RNA Editing in Cancer Innate Immunity and Patient Prognosis in another window
Includes: Supplementary data
Journal Articles

The 5-Hydroxymethylcytosine Landscape of Prostate Cancer

Open Access
Martin Sjöström, Shuang G. Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Raunak Shrestha, Arian Lundberg, Cameron Herberts, Adam Foye, Rahul Aggarwal, Junjie T. Hua, Haolong Li, Anna Bergamaschi, Corinne Maurice-Dror, Ashutosh Maheshwari, Sujun Chen, Sarah W.S. Ng, Wenbin Ye, Jessica Petricca, Michael Fraser, Lisa Chesner, Marc D. Perry, Thaidy Moreno-Rodriguez, William S. Chen, Joshi J. Alumkal, Jonathan Chou, Alicia K. Morgans, Tomasz M. Beer, George V. Thomas, Martin Gleave, Paul Lloyd, Tierney Phillips, Erin McCarthy, Michael C. Haffner, Amina Zoubeidi, Matti Annala, Robert E. Reiter, Matthew B. Rettig, Owen N. Witte, Lawrence Fong, Rohit Bose, Franklin W. Huang, Jianhua Luo, Anders Bjartell, Joshua M. Lang, Nupam P. Mahajan, Primo N. Lara, Christopher P. Evans, Phuoc T. Tran, Edwin M. Posadas, Chuan He, Xiao-Long Cui, Jiaoti Huang, Wilbert Zwart, Luke A. Gilbert, Christopher A. Maher, Paul C. Boutros, Kim N. Chi, Alan Ashworth, Eric J. Small, Housheng H. He, Alexander W. Wyatt, David A. Quigley, Felix Y. Feng
Journal: Cancer Research
Cancer Res (2022) 82 (21): 3888–3902.
https://doi.org/10.1158/0008-5472.CAN-22-1123
Published: 02 November 2022
View articletitled, The 5-Hydroxymethylcytosine Landscape of Prostate Cancer
Open the PDF for The 5-Hydroxymethylcytosine Landscape of Prostate Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 3071: A reconstruction of evolutionary trajectories in primary tissue and PDTOs in a patient with metastatic osteosarcoma

Free
Ardy Davarifar, Jane Yanagawa, Ahmad Al Shihabi, Huyen T. Nguyen, Lydia Y. Liu, Adriana Salcedo, Alfredo Gonzalez, Takafumi N. Yamaguchi, Nicholas Bernthal, Scott D. Nelson, Noah Federman, Paul C. Boutros, Alice Soragni
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3071.
https://doi.org/10.1158/1538-7445.AM2022-3071
Published: 15 June 2022
View articletitled, Abstract 3071: A reconstruction of evolutionary trajectories in primary tissue and PDTOs in a patient with metastatic osteosarcoma
Journal Articles

Abstract 3081: High-speed live cell interferometry captures heterogeneity in bioprinted tumor organoids

Free
Peyton J. Tebon, Bowen Wang, Alexander L. Markowitz, Graeme Murray, Ardalan Davarifar, Huyen T. Nguyen, Nasrin Tavanaie, Thang L. Nguyen, Paul C. Boutros, Michael A. Teitell, Alice Soragni
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3081.
https://doi.org/10.1158/1538-7445.AM2022-3081
Published: 15 June 2022
View articletitled, Abstract 3081: High-speed live cell interferometry captures heterogeneity in bioprinted tumor organoids
Journal Articles

Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors

Available to Purchase
James R. Hawley, Stanley Zhou, Christopher Arlidge, Giacomo Grillo, Ken J. Kron, Rupert Hugh-White, Theodorus H. van der Kwast, Michael Fraser, Paul C. Boutros, Robert G. Bristow, Mathieu Lupien
Journal: Cancer Research
Cancer Res (2021) 81 (23): 5833–5848.
https://doi.org/10.1158/0008-5472.CAN-21-2056
Published: 01 December 2021
View articletitled, Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Open the PDF for Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors in another window
Includes: Supplementary data
Journal Articles

Abstract 3771: Oncogenes and tumour-suppressors drive differential retinoblastoma evolution

Free
Adriana Salcedo, John D. Watson, Hilary Racher, Diane Rushlow, Shadrielle Melijah G. Espiritu, Doroto H. Sendorek, Stephenie D. Prokopec, Donco Matveski, Fouad Yousif, Julie Livingstone, Brenda L. Gallie, Paul C. Boutros
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3771.
https://doi.org/10.1158/1538-7445.AM2019-3771
Published: 01 July 2019
View articletitled, Abstract 3771: Oncogenes and tumour-suppressors drive differential retinoblastoma evolution