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Journal Articles

Abstract 5774: Small cell lung cancer subtype plasticity is regulated by KDM6A

Leslie Duplaquet, Yixiang Li, Matthew A. Booker, Yingtian Xie, Radhika A. Patel, Deli Hong, Thomas Denize, Emily Walton, Yasmin N. Laimon, Roderick Bronson, Jackson Southard, Shuqiang Li, Sabina Signoretti, Michael Y. Tolstorukov, Paloma Cejas, Henry W. Long, Michael C. Haffner, Matthew G. Oser
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5774.
https://doi.org/10.1158/1538-7445.AM2023-5774
Published: 04 April 2023
View article titled, Abstract 5774: Small cell lung cancer subtype plasticity is regulated by KDM6A
Journal Articles

Abstract 3562: Dissecting mechanisms underlying FOXR2-mediated gliomagenesis in diffuse midline gliomas

Jessica W. Tsai, Paloma Cejas, Marissa Coppola, Dayle K. Wang, Smruti Patel, David W. Wu, Phonepasong Arounleut, Xin Wei, Ningxuan Zhou, Sudeepa Syamala, Frank P. Dubois, Kristine Pelton, Jayne Vogelzang, Cecilia Sousa, Audrey Baguette, Xiaolong Chen, Alexandra L. Condurat, Sarah E. Dixon-Clarke, Annarah Charles, Kevin N. Zhou, Sophie D. Lu, Elizabeth M. Gonzalez, Madison S. Chacon, Jeromy J. Digiacomo, Rushil Kumbhani, Dana Novikov, Maria Tsoli, David S. Ziegler, Uta Dirksen, Natalie Jager, Gnana Prakash Balasubramanian, Christof M. Kramm, Michaela Nathrath, Stefan Bielack, Suzanne J. Baker, Jinghui Zhang, James M. McFarland, Gad Getz, Francois Aguet, Nada Jabado, Olaf Witt, Stefan M. Pfister, Keith L. Ligon, Volker Hovestadt, Claudia Kleinman, Henry Long, David T. Jones, Pratiti Bandopadhayay, Timothy N. Phoenix
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3562.
https://doi.org/10.1158/1538-7445.AM2023-3562
Published: 04 April 2023
View article titled, Abstract 3562: Dissecting mechanisms underlying <em>FOXR2</em>-mediated gliomagenesis in diffuse midline gliomas
Journal Articles

Abstract A020: Histone modification by Kmt2c and Kmt2d regulate metastasis in triple-negative breast cancer in vivo

Marco Seehawer, Zheqi Li, Jun Nishida, Paloma Cejas, Andrew Reiter, Seth Goldman, Pierre Foidart, Ernesto Rojas, Malvina Papanastasiou, Karen Adelman, Henry Long, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2022) 82 (23_Supplement_2): A020.
https://doi.org/10.1158/1538-7445.CancEpi22-A020
Published: 01 December 2022
View article titled, Abstract A020: Histone modification by Kmt2c and Kmt2d regulate metastasis in triple-negative breast cancer in vivo
Journal Articles

A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer

Agostina Nardone, Xintao Qiu, Sandor Spisak, Zsuzsanna Nagy, Ariel Feiglin, Avery Feit, Gabriela Cohen Feit, Yingtian Xie, Alba Font-Tello, Cristina Guarducci, Francisco Hermida-Prado, Sudeepa Syamala, Klothilda Lim, Miguel Munoz Gomez, Matthew Pun, MacIntosh Cornwell, Weihan Liu, Aysegul Ors, Hisham Mohammed, Paloma Cejas, Jane B. Brock, Matthew L. Freedman, Eric P. Winer, Xiaoyong Fu, Rachel Schiff, Henry W. Long, Otto Metzger Filho, Rinath Jeselsohn
Journal: Cancer Research
Cancer Res (2022) 82 (20): 3673–3686.
https://doi.org/10.1158/0008-5472.CAN-21-3186
Published: 17 October 2022
View article titled, A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer
Open the PDF for A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer in another window
Includes: Supplementary data
Journal Articles

FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits

Jessica W. Tsai, Paloma Cejas, Dayle K. Wang, Smruti Patel, David W. Wu, Phonepasong Arounleut, Xin Wei, Ningxuan Zhou, Sudeepa Syamala, Frank P.B. Dubois, Alexander Crane, Kristine Pelton, Jayne Vogelzang, Cecilia Sousa, Audrey Baguette, Xiaolong Chen, Alexandra L. Condurat, Sarah E. Dixon-Clarke, Kevin N. Zhou, Sophie D. Lu, Elizabeth M. Gonzalez, Madison S. Chacon, Jeromy J. Digiacomo, Rushil Kumbhani, Dana Novikov, J'Ya Hunter, Maria Tsoli, David S. Ziegler, Uta Dirksen, Natalie Jager, Gnana Prakash Balasubramanian, Christof M. Kramm, Michaela Nathrath, Stefan Bielack, Suzanne J. Baker, Jinghui Zhang, James M. McFarland, Gad Getz, François Aguet, Nada Jabado, Olaf Witt, Stefan M. Pfister, Keith L. Ligon, Volker Hovestadt, Claudia L. Kleinman, Henry Long, David T.W. Jones, Pratiti Bandopadhayay, Timothy N. Phoenix
Journal: Cancer Research
Cancer Res (2022) 82 (17): 2980–3001.
https://doi.org/10.1158/0008-5472.CAN-22-0671
Published: 02 September 2022
View article titled, FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits
Open the PDF for FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits in another window
Includes: Supplementary data
Journal Articles

Abstract 5730: FOXR2 is an oncogenic driver across adult and pediatric cancers

Jessica W. Tsai, Paloma Cejas, Dayle K. Wang, Smruti Patel, David W. Wu, Phonepasong Arounleut, Xin Wei, Ningxuan Zhou, Sudeepa Syamala, Frank P. Dubois, Kristine Pelton, Jayne Vogelzang, Cecilia Sousa, Audrey Baguette, Xiaolong Chen, Alexandra L. Condurat, Sarah E. Dixon-Clarke, Kevin N. Zhou, Sophie D. Lu, Elizabeth M. Gonzalez, Madison S. Chacon, Jeromy J. Digiacomo, Rushil Kumbhani, Dana Novikov, J'Ya Hunter, Maria Tsoli, David S. Ziegler, Uta Dirksen, Natalie Jager, Gnana Prakash Balasubramanian, Christof M. Kramm, Michaela Nathrath, Stefan Bielack, Suzanne J. Baker, Jinghui Zhang, James M. McFarland, Gad Getz, Francois Aguet, Nada Jabado, Olaf Witt, Stefan M. Pfister, Keith L. Ligon, Claudia Kleinman, Henry Long, David T. Jones, Pratiti Bandopadhayay, Timothy N. Phoenix
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5730.
https://doi.org/10.1158/1538-7445.AM2022-5730
Published: 15 June 2022
View article titled, Abstract 5730: FOXR2 is an oncogenic driver across adult and pediatric cancers
Journal Articles

Abstract P4-01-04: FGFR inhibitor mediated dismissal of SWI/SNF complexes from YAP-dependent enhancers induces therapeutic resistance in triple negative breast cancer

Yihao Li, Xintao Qiu, Xiaoqing Wang, Hui Liu, Renee Geck Geck, Alok Tewari, Kin-Hoe Chow, Tengfei Xiao, Paloma Cejas, Quang-Dé Nguyen, Henry Long, Shirley X Liu, Alex Toker, Myles Brown
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): P4-01-04.
https://doi.org/10.1158/1538-7445.SABCS21-P4-01-04
Published: 15 February 2022
View article titled, Abstract P4-01-04: FGFR inhibitor mediated dismissal of SWI/SNF complexes from YAP-dependent enhancers induces therapeutic resistance in triple negative breast cancer
Journal Articles

Abstract 1400: SWI/SNF chromatin remodeling complex regulation of YAP-dependent enhancers drives therapeutic resistance in triple-negative breast cancer

Yihao Li, Xintao Qiu, Hui Liu, Xiaoqing Wang, Renee C. Geck, Alok Tewari, Kin-Hoe Chow, Paloma Cejas, Quang-Dé Nguyen, Henry Long, Shirley X. Liu, Alex Toker, Myles Brown
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 1400.
https://doi.org/10.1158/1538-7445.AM2021-1400
Published: 01 July 2021
View article titled, Abstract 1400: SWI/SNF chromatin remodeling complex regulation of YAP-dependent enhancers drives therapeutic resistance in triple-negative breast cancer
Journal Articles

Abstract 65: Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade

Shengqing Gu, Wubing Zhang, Xiaoqing Wang, Peng Jiang, Nicole Traugh, Ziyi Li, Clifford Meyer, Blair Stewig, Yingtian Xie, Xia Bu, Michael Manos, Alba Font-Tello, Evisa Gjini, Ana Lako, Klothilda Lim, Jake Conway, Alok Tewari, Zexian Zeng, Avinash Das Sahu, Collin Tokheim, Jason L. Weirather, Jingxin Fu, Yi Zhang, Benjamin Kroger, Jin Hua Liang, Paloma Cejas, Gordon J. Freeman, Scott J. Rodig, Henry Long, Benjamin E. Gewurz, F. Stephen Hodi, Myles Brown, X. Shirley Liu
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 65.
https://doi.org/10.1158/1538-7445.AM2021-65
Published: 01 July 2021
View article titled, Abstract 65: Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade
Journal Articles

Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer

Changxin Wan, Matthew P. Keany, Han Dong, Linah F. Al-Alem, Unnati M. Pandya, Suzan Lazo, Karsten Boehnke, Katherine N. Lynch, Rui Xu, Dominique T. Zarrella, Shengqing Gu, Paloma Cejas, Klothilda Lim, Henry W. Long, Kevin M. Elias, Neil S. Horowitz, Colleen M. Feltmate, Michael G. Muto, Michael J. Worley, Jr, Ross S. Berkowitz, Ursula A. Matulonis, Marisa R. Nucci, Christopher P. Crum, Bo R. Rueda, Myles Brown, Xiaole Shirley Liu, Sarah J. Hill
Journal: Cancer Research
Series: Author Choice
Cancer Res (2021) 81 (1): 158–173.
https://doi.org/10.1158/0008-5472.CAN-20-1674
Published: 04 January 2021
View article titled, Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer
Open the PDF for Enhanced Efficacy of Simultaneous PD-1 and PD-L1 Immune Checkpoint Blockade in High-Grade Serous Ovarian Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract PO-010: Kidney angiomyolipomas are defined by a unique transcriptomic profile and H3K27ac chromatin state

Krinio Giannikou, Clemens K. Probst, Mahsa Zarei, Xintao Qiu, Melissa Duarte, Nikolas Kesten, Zachary Hebert, Raga Vadhi, Alba Font-Tello, Paloma Cejas, Charles H. Yoon, Chin-Lee Wu, Myles Brown, Elizabeth P. Henske, Henry Long, David J. Kwiatkowski
Journal: Cancer Research
Cancer Res (2020) 80 (23_Supplement): PO-010.
https://doi.org/10.1158/1538-7445.EPIMETAB20-PO-010
Published: 02 December 2020
View article titled, Abstract PO-010: Kidney angiomyolipomas are defined by a unique transcriptomic profile and H3K27ac chromatin state
Journal Articles

ERG-Mediated Coregulator Complex Formation Maintains Androgen Receptor Signaling in Prostate Cancer

Neel Shah, Nikolas Kesten, Alba Font-Tello, Matthew E.K. Chang, Raga Vadhi, Klothilda Lim, Mark R. Flory, Paloma Cejas, Hisham Mohammed, Henry W. Long, Myles Brown
Journal: Cancer Research
Cancer Res (2020) 80 (21): 4612–4619.
https://doi.org/10.1158/0008-5472.CAN-20-2044
Published: 03 November 2020
View article titled, ERG-Mediated Coregulator Complex Formation Maintains Androgen Receptor Signaling in Prostate Cancer
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Includes: Supplementary data
Journal Articles

Genomic Predictors of Good Outcome, Recurrence, or Progression in High-Grade T1 Non–Muscle-Invasive Bladder Cancer

Joaquim Bellmunt, Jaegil Kim, Brendan Reardon, Júlia Perera-Bel, Anna Orsola, Alejo Rodriguez-Vida, Stephanie A. Wankowicz, Michaela Bowden, Justine A. Barletta, Juan Morote, Inés de Torres, Nuria Juanpere, Josep Lloreta-Trull, Silvia Hernandez, Kent W. Mouw, Mary-Ellen Taplin, Paloma Cejas, Henry W. Long, Eliezer M. Van Allen, Gad Getz, David J. Kwiatkowski
Journal: Cancer Research
Cancer Res (2020) 80 (20): 4476–4486.
https://doi.org/10.1158/0008-5472.CAN-20-0977
Published: 15 October 2020
View article titled, Genomic Predictors of Good Outcome, Recurrence, or Progression in High-Grade T1 Non–Muscle-Invasive Bladder Cancer
Open the PDF for Genomic Predictors of Good Outcome, Recurrence, or Progression in High-Grade T1 Non–Muscle-Invasive Bladder Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 3662: FiTAc-seq: Fixed-Tissue ChIP-seq for H3K27Ac profiling and super-enhancer analysis on FFPE tissues

Alba Font-Tello, Nikolas Kesten, Yingtian Xie, Len Taing, Joaquim Bellmunt, Myles Brown, Paloma Cejas, Henry Long
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3662.
https://doi.org/10.1158/1538-7445.AM2020-3662
Published: 15 August 2020
View article titled, Abstract 3662: FiTAc-seq: Fixed-Tissue ChIP-seq for H3K27Ac profiling and super-enhancer analysis on FFPE tissues
Journal Articles

Abstract 2615: Systematic approaches to predict oncogenic transcriptional regulatory circuitries identify important nodes in high-grade serous ovarian cancer

Brian J. Abraham, Jessica Reddy, Marcos A. Fonseca, Isaac A. Klein, Lena K. Afeyan, Rosario I. Corona, Paloma Cejas, Felipe Segato, Beth Y. Karlan, Simon A. Gayther, Matthew L. Freedman, Houtan Noushmehr, Myles Brown, Ursula A. Matulonis, Kate Lawrenson, Richard A. Young
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2615.
https://doi.org/10.1158/1538-7445.AM2019-2615
Published: 01 July 2019
View article titled, Abstract 2615: Systematic approaches to predict oncogenic transcriptional regulatory circuitries identify important nodes in high-grade serous ovarian cancer
Journal Articles

Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype

Paloma Cejas, Alessia Cavazza, C.N. Yandava, Victor Moreno, David Horst, Juan Moreno-Rubio, Emilio Burgos, Marta Mendiola, Len Taing, Ajay Goel, Jaime Feliu, Ramesh A. Shivdasani
Journal: Cancer Research
Cancer Res (2017) 77 (3): 766–779.
https://doi.org/10.1158/0008-5472.CAN-16-1346
Published: 31 January 2017
View article titled, Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype
Open the PDF for Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype in another window
Includes: Supplementary data
Journal Articles

Role of MKP-1 and NFkB on survival of non-small cell lung carcinoma cells to cisplatin

Rosario Perona, Sharmila Chattopadhyay, Carmen Moratilla, Cristobal Belda-Iniesta, Paloma Cejas, Juan-Angel Fresno, Rosario Machado-Pinilla, Cristina Manguan-Garcia, Manuel Nistal, Manuel Gonzalez-Baron
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 783.
Published: 01 May 2005
View article titled, Role of MKP-1 and NFkB on survival of non-small cell lung carcinoma cells to cisplatin