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Journal Articles

Comparative Single-Cell Transcriptomics of Human Neuroblastoma and Preclinical Models Reveals Conservation of an Adrenergic Cell State

Bethel Tesfai Embaie, Hirak Sarkar, Adele M. Alchahin, Jörg Otte, Thale Kristin Olsen, Conny Tümmler, Polina Kameneva, Artem V. Artemov, Natalia Akkuratova, Igor Adameyko, Jan-Bernd Stukenborg, Malin Wickström, Per Kogner, John Inge Johnsen, Shenglin Mei, Peter V. Kharchenko, Ninib Baryawno

Cancer Res (2025) 85 (6): 1015–1034.

https://doi.org/10.1158/0008-5472.CAN-24-1507

Published: 14 March 2025

View articletitled, Comparative Single-Cell Transcriptomics of Human Neuroblastoma and Preclinical Models Reveals Conservation of an Adrenergic Cell State

Includes: Supplementary data

Journal Articles

Abstract B060: Clonal composition of αβ and γδ T cells in primary human neuroblastoma tumors – Is every child unique?

Bronte Manouk Verhoeven, Kewei Ye, Jakob Stenman, Per Kogner, John Inge Johnsen, Oscar Bedoya Reina, Taras Kreslavskiy, Ninib Baryawno

Cancer Res (2024) 84 (17_Supplement): B060.

https://doi.org/10.1158/1538-7445.PEDIATRIC24-B060

Published: 05 September 2024

View articletitled, Abstract B060: Clonal composition of αβ and γδ T cells in primary human neuroblastoma tumors – Is every child unique?

Journal Articles

Abstract 631: Single-cell analysis of immune and stroma cell remodeling in renal cell carcinoma primary tumors and bone metastatic lesions

Shenglin Mei, Adele M. Alchahin, Ioanna Tsea, Youmna Kfoury, Taghreed Taghreed, Hirak Sarkar, Shulin Wu, Alexander O. Subtelny, Yida Zhang, Keyan Salari, Chin-Lee Wu, Mark A. Randolph, David T. Scadden, Douglas Dahl, John Shin, Peter Kharchenko, Philip Saylor, David Sykes, Ninib Baryawno

Cancer Res (2023) 83 (7_Supplement): 631.

https://doi.org/10.1158/1538-7445.AM2023-631

Published: 04 April 2023

View articletitled, Abstract 631: Single-cell analysis of immune and stroma cell remodeling in renal cell carcinoma primary tumors and bone metastatic lesions

Journal Articles

Abstract 1678: Single-cell landscape of the TH-MYCN neuroblastoma mouse model

Bethel Tesfai Embaie, Adele Alchahin, Thale Kristin Olsen, Hirak Sarkar, Shenglin Mei, Ninib Baryawno

Cancer Res (2022) 82 (12_Supplement): 1678.

https://doi.org/10.1158/1538-7445.AM2022-1678

Published: 15 June 2022

View articletitled, Abstract 1678: Single-cell landscape of the TH-MYCN neuroblastoma mouse model

Journal Articles

Abstract 6215: The immune cell atlas of human neuroblastoma

Bronte Manouk Verhoeven, Shenglin Mei, Thale K. Olsen, Karin K. Gustafsson, Anders Valind, Axel Lindström, David G. Nord, Shahrzad S. Fard, Catharina Hagerling, Peter V. Kharchenko, Per Kogner, John I. Johnsen, Ninib Baryawno

Cancer Res (2022) 82 (12_Supplement): 6215.

https://doi.org/10.1158/1538-7445.AM2022-6215

Published: 15 June 2022

View articletitled, Abstract 6215: The immune cell atlas of human neuroblastoma

Journal Articles

Abstract 1677: Transcriptomic landscape of medulloblastoma reveals pathways of tumor-stroma remodelling

Ioanna Tsea, Yana Ruchiy, Manouk Verhoeven, Indranil Sinha, Klas Blomgren, Lena Maria Carlson, John Inge Johnsen, Cecilia Dyberg, Ninib Baryawno

Cancer Res (2022) 82 (12_Supplement): 1677.

https://doi.org/10.1158/1538-7445.AM2022-1677

Published: 15 June 2022

View articletitled, Abstract 1677: Transcriptomic landscape of medulloblastoma reveals pathways of tumor-stroma remodelling

Journal Articles

Abstract 982: A new transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma

Adele Mirna Alchahin, Shenglin Mei, Ioanna Tsea, Taghreed Hirz, Youmna Kfoury, Douglas Dahl, Chin-Lee Wu, Alexander O. Subtelny, Shulin WU, David T. Scadden, John H. Shin, Philip J. Saylor, David B. Sykes, Peter V. Kharchenko, Ninib Baryawno

Cancer Res (2022) 82 (12_Supplement): 982.

https://doi.org/10.1158/1538-7445.AM2022-982

Published: 15 June 2022

View articletitled, Abstract 982: A new transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma

Journal Articles

Abstract 2510: An atlas of single-cell and spatial transcriptomics reveals alterations that correlate with human prostate cancer progression

Taghreed Hirz, Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Chin-Lee Wu, Fei Chen, Evan Z. Macosko, Douglas M. Dahl, Ninib Baryawno, David T. Scadden, Philip J. Saylor, Peter V. Kharchenko, David B. Sykes

Cancer Res (2022) 82 (12_Supplement): 2510.

https://doi.org/10.1158/1538-7445.AM2022-2510

Published: 15 June 2022

View articletitled, Abstract 2510: An atlas of single-cell and spatial transcriptomics reveals alterations that correlate with human prostate cancer progression

Journal Articles

Abstract IA23: Impact of metastatic prostate cancer on human bone marrow

Ninib Baryawno, Youmna Kfoury, Nicolas Severe, Shenglin Mei, Karin Gustafsson, Taghreed Hirz, Thomas Brouse, Elizabeth W. Scadden, Anna A. Igolkina, Bryan D. Choi, Nikolas Barkas, John H. Shin, Philip J. Saylor, David T. Scadden, David B. Sykes, Peter V. Kharchenko

Cancer Res (2020) 80 (21_Supplement): IA23.

https://doi.org/10.1158/1538-7445.TUMHET2020-IA23

Published: 03 November 2020

View articletitled, Abstract IA23: Impact of metastatic prostate cancer on human bone marrow

Journal Articles

Abstract 3446: High-resolution mapping of human prostate tumors- guiding better risk stratification and therapeutic approaches

Taghreed Hirz, Shenglin Mei, Youmna Kfoury, Chin-Lee Wu, Douglas M. Dahl, Philip Saylor, Peter Kharchenko, Ninib Baryawno, David Sykes

Cancer Res (2020) 80 (16_Supplement): 3446.

https://doi.org/10.1158/1538-7445.AM2020-3446

Published: 15 August 2020

View articletitled, Abstract 3446: High-resolution mapping of human prostate tumors- guiding better risk stratification and therapeutic approaches

Journal Articles

Modulating Bone Marrow Hematopoietic Lineage Potential to Prevent Bone Metastasis in Breast Cancer

Jessalyn M. Ubellacker, Ninib Baryawno, Nicolas Severe, Molly J. DeCristo, Jaclyn Sceneay, John N. Hutchinson, Marie-Therese Haider, Catherine S. Rhee, Yuanbo Qin, Walter M. Gregory, Ana C. Garrido-Castro, Ingunn Holen, Janet E. Brown, Robert E. Coleman, David T. Scadden, Sandra S. McAllister

Cancer Res (2018) 78 (18): 5300–5314.

https://doi.org/10.1158/0008-5472.CAN-18-0548

Published: 14 September 2018

View articletitled, Modulating Bone Marrow Hematopoietic Lineage Potential to Prevent Bone Metastasis in Breast Cancer

Includes: Supplementary data

Journal Articles

Abstract 5092: Establishment of an induction protocol for medulloblastoma during prenatal stages of a floxed-cre inducible model

Gabriel Gallo-Oller, Ani Azatyan, Ninib Baryawno, Per Kogner, John Inge Johnsen

Cancer Res (2018) 78 (13_Supplement): 5092.

https://doi.org/10.1158/1538-7445.AM2018-5092

Published: 01 July 2018

View articletitled, Abstract 5092: Establishment of an induction protocol for medulloblastoma during prenatal stages of a floxed-cre inducible model

Journal Articles

Abstract 3026: Targeting GPX4 in tumor-associated stromal cells increases inflammatory-cell infiltration

Shrikanta Chattopadhyay, Cherrie Huang, Ninib Baryawno, Nicolas Severe, Vasanthi Viswanathan, Carlotta Costa, David Scadden, Stuart Schreiber

Cancer Res (2017) 77 (13_Supplement): 3026.

https://doi.org/10.1158/1538-7445.AM2017-3026

Published: 01 July 2017

View articletitled, Abstract 3026: Targeting GPX4 in tumor-associated stromal cells increases inflammatory-cell infiltration

Journal Articles

Abstract 1945: PPM1D/Wip1, promising new target in childhood cancers neuroblastoma and medulloblastoma

Jelena Milosevic, Nina Eissler, Diana Treis, Malin Wicktröm, Susanne Fransson, Baldur Sveinbjornsson, Ninib Baryawno, Subazini Kosalai, Chandrasekhar Kanduri, Kazuyasu Sakaguchi, Tommy Martinsson, John Inge Johnsen, Per Kogner

Cancer Res (2017) 77 (13_Supplement): 1945.

https://doi.org/10.1158/1538-7445.AM2017-1945

Published: 01 July 2017

View articletitled, Abstract 1945: PPM1D/Wip1, promising new target in childhood cancers neuroblastoma and medulloblastoma

Journal Articles

Abstract B11: Targeting mesenchymal cells in the tumor stroma by GPX4 inhibition

Shrikanta Chattopadhyay, Cherrie Huang, Ninib Baryawno, Nicolas Severe, Vasanthi Viswanathan, Zarko Boskovic, Siddhartha Mukherjee, Jeff Gentry, Ben Wittner, Sridhar Ramaswamy, Alykhan Shamji, David Scadden, Stuart Schreiber

Cancer Res (2016) 76 (15_Supplement): B11.

https://doi.org/10.1158/1538-7445.TME16-B11

Published: 28 July 2016

View articletitled, Abstract B11: Targeting mesenchymal cells in the tumor stroma by GPX4 inhibition

Journal Articles

Abstract 503: The PPM1D encoded phosphatase Wip1 is a novel oncogene and potential therapeutic target in neuroblastoma and medulloblastoma

Jelena Milosevic, Diana Treis, Malin Wickstrom, Susanne Fransson, Nina Eissler, Baldur Sveinbjörnsson, Ninib Baryawno, Keiji Tanino, Galina Selivanova, Kazuyasu Sakaguchi, Tommy Martinsson, John Inge Johnsen, Per Kogner

Cancer Res (2015) 75 (15_Supplement): 503.

https://doi.org/10.1158/1538-7445.AM2015-503

Published: 01 August 2015

View articletitled, Abstract 503: The PPM1D encoded phosphatase Wip1 is a novel oncogene and potential therapeutic target in neuroblastoma and medulloblastoma

Journal Articles

Abstract 3971: PPM1D/WIP1, a potential target in neuroblastoma

Jelena Milosevic, Malin Wickström, Diana Treis, Hjalmar Ståhlberg Nordegren, Lotta Elfman, Ninib Baryawno, Susanne Fransson, Baldur Sveinbjörnsson, Tommy Martinsson, John Inge Johnsen, Per Kogner

Cancer Res (2014) 74 (19_Supplement): 3971.

https://doi.org/10.1158/1538-7445.AM2014-3971

Published: 01 October 2014

View articletitled, Abstract 3971: PPM1D/WIP1, a potential target in neuroblastoma

Journal Articles

Abstract 3817: The potential oncogenic significance of Wip1 in neuroblastoma.

Jelena Milosevic, Malin Wickström, Lotta Elfman, Ninib Baryawno, Baldur Sveinbjörnsson, Tommy Martinsson, John Inge Johnsen, Per Kogner

Cancer Res (2013) 73 (8_Supplement): 3817.

https://doi.org/10.1158/1538-7445.AM2013-3817

Published: 15 April 2013

View articletitled, Abstract 3817: The potential oncogenic significance of Wip1 in neuroblastoma.

Journal Articles

Abstract 2751: Wnt/β-catenin regulates the expression of MGMT through TCF/LEF transcription: new strategy for DNA alkylators in cancer therapy.

Malin Wickström, Ninib Baryawno, Cecilia Dyberg, Jelena Milosevic, Baldur Sveinbjörnsson, Paul A. Northcott, Michael Taylor, Marcel Kool, Per Kogner, John I. Johnsen

Cancer Res (2013) 73 (8_Supplement): 2751.

https://doi.org/10.1158/1538-7445.AM2013-2751

Published: 15 April 2013

View articletitled, Abstract 2751: Wnt/β-catenin regulates the expression of MGMT through TCF/LEF transcription: new strategy for DNA alkylators in cancer therapy.

Journal Articles

Abstract 825: Wnt/beta-catenin signaling regulates the expression of O6-methylguanine DNA-methyltransferase in cancer cells: a new strategy to overcome resistance for DNA alkylators in cancer therapy

Cecilia H. Dyberg, Ninib Baryawno, Jelena Milosevic, Malin Wickström, Baldur Sveinbjörnsson, Paul A. Northcott, Michael D. Taylor, Marcel Kool, Per Kogner, John Inge Johnsen

Cancer Res (2012) 72 (8_Supplement): 825.

https://doi.org/10.1158/1538-7445.AM2012-825

Published: 15 April 2012

View articletitled, Abstract 825: Wnt/beta-catenin signaling regulates the expression of O6-methylguanine DNA-methyltransferase in cancer cells: a new strategy to overcome resistance for DNA alkylators in cancer therapy

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Comparative Single-Cell Transcriptomics of Human Neuroblastoma and Preclinical Models Reveals Conservation of an Adrenergic Cell State

Abstract B060: Clonal composition of αβ and γδ T cells in primary human neuroblastoma tumors – Is every child unique?

Abstract 631: Single-cell analysis of immune and stroma cell remodeling in renal cell carcinoma primary tumors and bone metastatic lesions

Abstract 1678: Single-cell landscape of the TH-MYCN neuroblastoma mouse model

Abstract 6215: The immune cell atlas of human neuroblastoma

Abstract 1677: Transcriptomic landscape of medulloblastoma reveals pathways of tumor-stroma remodelling

Abstract 982: A new transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma

Abstract 2510: An atlas of single-cell and spatial transcriptomics reveals alterations that correlate with human prostate cancer progression

Abstract IA23: Impact of metastatic prostate cancer on human bone marrow

Abstract 3446: High-resolution mapping of human prostate tumors- guiding better risk stratification and therapeutic approaches

Modulating Bone Marrow Hematopoietic Lineage Potential to Prevent Bone Metastasis in Breast Cancer

Abstract 5092: Establishment of an induction protocol for medulloblastoma during prenatal stages of a floxed-cre inducible model

Abstract 3026: Targeting GPX4 in tumor-associated stromal cells increases inflammatory-cell infiltration

Abstract 1945: PPM1D/Wip1, promising new target in childhood cancers neuroblastoma and medulloblastoma

Abstract B11: Targeting mesenchymal cells in the tumor stroma by GPX4 inhibition

Abstract 503: The PPM1D encoded phosphatase Wip1 is a novel oncogene and potential therapeutic target in neuroblastoma and medulloblastoma

Abstract 3971: PPM1D/WIP1, a potential target in neuroblastoma

Abstract 3817: The potential oncogenic significance of Wip1 in neuroblastoma.

Abstract 2751: Wnt/β-catenin regulates the expression of MGMT through TCF/LEF transcription: new strategy for DNA alkylators in cancer therapy.

Abstract 825: Wnt/beta-catenin signaling regulates the expression of O6-methylguanine DNA-methyltransferase in cancer cells: a new strategy to overcome resistance for DNA alkylators in cancer therapy

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