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Nikolaus Schultz
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Journal Articles

Abstract 3058: Characterization of the tumor microbiome in patients with locally advanced rectal cancer treated with neoadjuvant therapy

Chad M. Vanderbilt, Walid K. Chatila, Danny N. Khalil, Chin-Tung Chen, Jin K. Kim, Fan Wu, Nikolaus Schultz, Martin R. Weiser, Julio Garcia-Aguilar, Francisco Sanchez-Vega
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3058.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3058
Published: 15 June 2022
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Abstract 1158: A.I.-assisted clinical data curation to determine genomic biomarkers of cancer metastasis

Anisha Luthra, Karl Pichotta, Brooke Mastrogiacomo, Samantha McCarthy, Steven Maron, Jianjiong Gao, Justin Jee, Christopher J. Fong, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1158.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1158
Published: 15 June 2022
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Abstract 1514: Examining the impact of chromosomal instability on mucosal melanoma tumor infiltrate and responses to PD-1 based therapy

Emma Armstrong, Lee Gottesdiener, Nikolaus Schultz, Samuel F. Bakhoum, Travis J. Hollmann, Alexander Shoushtari
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1514.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1514
Published: 15 June 2022
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Journal Articles

Abstract 1155: cBioPortal for cancer genomics

Jianjiong Gao, Tali Mazor, Ino de Bruijn, Adam Abeshouse, Diana Baiceanu, Ziya Erkoc, Elena Garcia Lara, Benjamin Gross, David M. Higgins, Prasanna K. Jagannathan, Priti Kumari, Ritika Kundra, Xiang Li, James Lindsay, Aaron Lisman, Divya Madala, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Sander Rodenburg, Baby A. Satravada, Robert Sheridan, Lucas Sikina, Jessica Singh, S. Onur Sumer, Yichao Sun, Pim van Nierop, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Sjoerd van Hagen, Kees van Bochove, Ugur Dogrusoz, Allison Heath, Adam Resnick, Trevor J. Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1155.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1155
Published: 15 June 2022
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Journal Articles

Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Ino de Bruijn, Xiang Li, Onur Sumer, Benjamin Gross, Robert Sheridan, Angelica Ochoa, Manda Wilson, Avery Wang, Hongxin Zhang, Aaron Lisman, Adam Abeshouse, Sander Rodenburg, Sjoerd van Hagen, Remond Fijneman, Gerrit Meijer, Nikolaus Schultz, Jianjiong Gao
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1156.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1156
Published: 15 June 2022
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Journal Articles

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Benjamin Xu, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia E. Rudolph, Ross L. Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1189.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1189
Published: 15 June 2022
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Journal Articles

Abstract 2182: Ancestry inference and population-specific disparities in a real-world clinical sequencing cohort

Kanika Arora, Thinh N. Tran, Yelena M. Kemel, Miika Mehine, Ying Liu, Shaleigh A. Smith, Subhiksha Nandakumar, Irina Ostrovnaya, Thomas C. Reynolds, Kenneth Offit, David Solit, Marc Ladanyi, Nikolaus Schultz, Ahmet Zehir, Carol L. Brown, Debyani Chakravarty, Zsofia K. Stadler, Chaitanya Bandlamudi, Michael F. Berger
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2182.
DOI: https://doi.org/10.1158/1538-7445.AM2022-2182
Published: 15 June 2022
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Journal Articles

Abstract 3634: Integrative analysis of the contribution of genomic and clinical factors to worse clinical outcomes in non-Hispanic Black patients with colorectal cancer

Henry Walch, Anisha Luthra, Walid K. Chatila, Fan Wu, Debyani Chakravarty, Chin-Tung Chen, Rupa Sood, Dana M. Omer, Jesse J. Smith, Nikolaus Schultz, Karuna Ganesh, Julio Garcia-Aguilar, Rona Yaeger, Francisco Sanchez-Vega
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3634.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3634
Published: 15 June 2022
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Journal Articles

Abstract 2131: Curating cartography: Enabling the harmonisation, visualisation, and reuse of diverse multiplexed imaging data through the Human Tumor Atlas Network Data Coordinating Center

Adam J. Taylor, Milen Nikolov, Ino de Brujin, Jeremy Muhlich, Mialy De Felice, Artem Sokolov, Denis Schapiro, Peter Sorger, Julie Bletz, Nikolaus Schultz, Vésteinn Thorsson, James Eddy, Ethan Cerami
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2131.
DOI: https://doi.org/10.1158/1538-7445.AM2022-2131
Published: 15 June 2022
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Journal Articles

Abstract 82: Molecular characterization of gallbladder cancer

Nicolas A. Giraldo, Abhinita Mohanty, Chad Vanderbilt, Rose Brannon, Ryma Benayed, Efsevia Vakiani, Ghassan Abou-Alfa, James Harding, Imane El Dika, Nikolaus Schultz, Bob Li, Michael F. Berger, Marc Ladanyi, Eileen O'Reilly, William Jarnagin, Olca Basturk, Maria Arcila
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 82.
DOI: https://doi.org/10.1158/1538-7445.AM2022-82
Published: 15 June 2022
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Journal Articles

Abstract 2498: Identification and characterization of the PIK3R1-mutant subtype in PI3K-addicted prostate cancer

Goutam Chakraborty, Subhiksha Nandakumar, Rahim Hirani, Sai Harisha Rajanala, Bastien Nguyen, Romina Ghale, Ying Z. Mazzu, Lina E. Jehane, Gwo-Shu Mary Lee, Lorelei A. Mucci, Nikolaus Schultz, Philip W. Kantoff
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2498.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2498
Published: 01 July 2021
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Journal Articles

Abstract 2620: Ignoring left truncation in overall survival within real-world genomic-phenomic data leads to inflated survival estimates

Samantha Brown, Jessica A. Lavery, Eva M. Lepisto, Caroline McCarthy, Hira Rizvi, Celeste Yu, Kenneth L. Kehl, Shawn M. Sweeney, Julia E. Rudolph, Nikolaus Schultz, Ritika Kundra, Brooke Mastrogiacomo, Phillipe Bedard, Jeremy L. Warner, Gregory J. Riely, Deborah Schrag, Katherine S. Panageas, The AACR Project GENIE Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2620.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2620
Published: 01 July 2021
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Journal Articles

Abstract 2619: Defining real-world recurrence in the AACR Project GENIE Biopharma Collaborative Data

Jessica A. Lavery, Samantha Brown, Eva Lepisto, Michele L. Lenoue-Newton, Caroline McCarthy, Hira Rizvi, Celeste Yu, Kenneth L. Kehl, Shawn M. Sweeney, Julia E. Rudolph, Nikolaus Schultz, Brooke Mastrogiacomo, Ritika Kundra, Jeremy Warner, Philippe Bedard, Gregory J. Riely, Katherine S. Panageas, Deborah Schrag, AACR Project GENIE Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2619.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2619
Published: 01 July 2021
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Journal Articles

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Sarah P. Suehnholz, Ritika Kundra, Hongxin Zhang, Shaleigh Smith, Moriah Nissan, Yifu Yao, Lindsay LaFave, Kinisha Gala, Linde Miles, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia Rudolph, Paul Sabbatini, Ross Levine, Ahmet Dogan, Jianjiong Gao, David Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 99.
DOI: https://doi.org/10.1158/1538-7445.AM2021-99
Published: 01 July 2021
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Journal Articles

Abstract 2834: Integration of genomic and clinical data from 25,000 patients identifies molecular determinants of metastatic potential and organotropisms

Bastien Nguyen, Christopher Fong, Renzo DiNatale, Anisha Luthra, Subhiksha Nandakumar, Henry Walch, Walid K. Chatila, Arjun Rajanna, David B. Solit Solit, Michael F. Berger, Ahmet Zehir, Jianjiong Gao, Francisco Sanchez-Vega, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2834.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2834
Published: 01 July 2021
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Journal Articles

Abstract 207: The cBioPortal for Cancer Genomics

Jianjiong Gao, Tali Mazor, Ino de Bruijn, Adam Abeshouse, Diana Baiceanu, Ziya Erkoc, Benjamin Gross, David Higgins, Prasanna K. Jagannathan, Karthik Kalletla, Priti Kumari, Ritika Kundra, Xiang Li, James Lindsay, Aaron Lisman, Pieter Lukasse, Divya Madala, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Joyce Quach, Sander Rodenburg, Anusha Satravada, Fedde Schaeffer, Robert Sheridan, Lucas Sikina, S. Onur Sumer, Yichao Sun, Paul van Dijk, Pim van Nierop, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Sjoerd van Hagen, Kees van Bochove, Ugur Dogrusoz, Allison Heath, Adam Resnick, Trevor J. Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 207.
DOI: https://doi.org/10.1158/1538-7445.AM2021-207
Published: 01 July 2021
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Abstract PO-114: Mathematical modeling of tumor heterogeneity to optimize treatment scheduling and delay the evolution of resistance

Deepti Mathur, Bradford Porter Taylor, Walid Chatila, Nikolaus Schultz, Pedram Razavi, Joao Xavier
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-114.
DOI: https://doi.org/10.1158/1538-7445.TUMHET2020-PO-114
Published: 03 November 2020
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Abstract 1109: Integrative analysis of clinical and genomic information identifies predictive markers of metastatic risk

Christopher J. Fong, Francisco Sanchez-Vega, Bastien Ngyuen, Anisha Luthra, Subhiksha Nandakumar, Henry Walch, Walid Chatila, Arjun Rajanna, Ahmet Zehir, Michael Berger, Jianjiong Gao, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1109.
DOI: https://doi.org/10.1158/1538-7445.AM2020-1109
Published: 15 August 2020
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Abstract 3209: The cBioPortal for Cancer Genomics

Jianjiong Gao, Tali Mazor, Adam Abeshouse, Ino de Bruijn, Benjamin Gross, Karthik Kalletla, Priti Kumari, Ritika Kundra, Xiang Li, James Lindsay, Aaron Lisman, Pieter Lukasse, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Sander Rodenburg, Fedde Schaeffer, Robert Sheridan, Lucas Sikina, Jing Su, S. Onur Sumer, Yichao Sun, Paul van Dijk, Sjoerd van Hagen, Pim van Nierop, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Kelsey Zhu, Kees van Bochove, Ugur Dogrusoz, Allison Heath, Adam Resnick, Trevor J. Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3209.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3209
Published: 15 August 2020
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Abstract 3208: OncoKB, a precision oncology knowledgebase

Sarah Suehnholz, Hongxin Zhang, Moriah Nissan, Ritika Kundra, Jing Su, Lindsay LaFave, Kinisha Gala, Chad Vanderbilt, Maria Arcila, Marc Ladanyi, Michael Berger, Ahmet Zehir, Julia E. Rudolph, Paul Sabbatini, Ross Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3208.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3208
Published: 15 August 2020
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