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Journal Articles

Abstract PO5-16-01: Clinicogenomic analysis reveals genomic associations of brain metastatic tropism in breast cancer

Anton Safonov, Deborah Smith, Emanuela Ferraro, Junchao Shen, Ishaani Khatri, Rahul Kumar, Julia An, Mark Robson, Sarat Chandarlapaty, Adrienne Boire, Nikolaus Schultz, Nelson Moss, Luke Pike, Pedram Razavi

Cancer Res (2024) 84 (9_Supplement): PO5-16-01.

https://doi.org/10.1158/1538-7445.SABCS23-PO5-16-01

Published: 02 May 2024

View article titled, Abstract PO5-16-01: Clinicogenomic analysis reveals genomic associations of brain metastatic tropism in breast cancer

Journal Articles

Abstract 1009: Direct partnering with employers and unions diversifies cancer center access

Michele Waters, Greg Crewse, Cole Manship, Abigail Baldwin-Medsker, Chris Fong, Nikolaus Schultz, Sergio Giralt, Benjamin Roman, Michelle Johnson, Francesca Gany, Carol Brown, Bob T. Li, Justin Jee

Cancer Res (2024) 84 (6_Supplement): 1009.

https://doi.org/10.1158/1538-7445.AM2024-1009

Published: 22 March 2024

View article titled, Abstract 1009: Direct partnering with employers and unions diversifies cancer center access

Journal Articles

Abstract 3703: Utility of circulating tumor DNA (ctDNA) from cerebrospinal fluid (CSF) for prognosis of patients with recurrent high grade glioma

Cancer Res (2024) 84 (6_Supplement): 3703.

https://doi.org/10.1158/1538-7445.AM2024-3703

Published: 22 March 2024

View article titled, Abstract 3703: Utility of circulating tumor DNA (ctDNA) from cerebrospinal fluid (CSF) for prognosis of patients with recurrent high grade glioma

Journal Articles

Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Kanika Arora, Sarah P. Suehnholz, Hongxin Zhang, Ritika Kundra, Subhiksha Nandakumar, Moriah Nissan, A. Rose Brannon, Chaitanya Bandlamudi, Marc Ladanyi, Alexander Drilon, David B. Solit, Nikolaus Schultz, Michael F. Berger, Debyani Chakravarty

Cancer Res (2024) 84 (6_Supplement): 6129.

https://doi.org/10.1158/1538-7445.AM2024-6129

Published: 22 March 2024

View article titled, Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Journal Articles

Abstract 6123: Validating cancer modulated allostatic load as a composite biomarker for mortality in patients with cancer

Christopher J. Fong, Kaicheng U, Cheryl Phua, Xuechun Bai, Michele Waters, Tom Fu, Kanika Arora, Tomin Perea-Chamblee, Devika Jutagir, Michael Berger, Nikolaus Schultz, Adam Schoenfeld, Francesca Gany, Justin Jee, Jian Carrot-Zhang

Cancer Res (2024) 84 (6_Supplement): 6123.

https://doi.org/10.1158/1538-7445.AM2024-6123

Published: 22 March 2024

View article titled, Abstract 6123: Validating cancer modulated allostatic load as a composite biomarker for mortality in patients with cancer

Journal Articles

Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Cancer Res (2024) 84 (6_Supplement): 3892.

https://doi.org/10.1158/1538-7445.AM2024-3892

Published: 22 March 2024

View article titled, Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Journal Articles

Abstract 1252: AI-derived predictions improve identification of real-world cancer driver mutations

Thinh N. Tran, Chris Fong, Karl Pichotta, Anisha Luthra, Ronglai Shen, Yuan Chen, Michele Waters, Susie Kim, Gregory Riely, Debyani Chakravarty, Nikolaus Schultz, Justin Jee

Cancer Res (2024) 84 (6_Supplement): 1252.

https://doi.org/10.1158/1538-7445.AM2024-1252

Published: 22 March 2024

View article titled, Abstract 1252: AI-derived predictions improve identification of real-world cancer driver mutations

Journal Articles

Abstract 1202: Signatures of selection for biallelic inactivation in tumor suppressor genes across cancer types

Cancer Res (2024) 84 (6_Supplement): 1202.

https://doi.org/10.1158/1538-7445.AM2024-1202

Published: 22 March 2024

View article titled, Abstract 1202: Signatures of selection for biallelic inactivation in tumor suppressor genes across cancer types

Journal Articles

Abstract 2556: Longitudinal analyses of clinical sequencing data provide novel insights into the evolutionary dynamics of lung adenocarcinoma

Brooke Mastrogiacomo, Elizabeth G. Dunne, Cameron N. Fick, John Nguyen, Jairam Hathwar, Manendra Lankadasari, Yuan Liu, Soo-Ryum Yang, Jason Chang, Walid K. Chatila, Nikolaus Schultz, David R. Jones, Francisco Sanchez-Vega

Cancer Res (2024) 84 (6_Supplement): 2556.

https://doi.org/10.1158/1538-7445.AM2024-2556

Published: 22 March 2024

View article titled, Abstract 2556: Longitudinal analyses of clinical sequencing data provide novel insights into the evolutionary dynamics of lung adenocarcinoma

Journal Articles

Abstract 1249: cBioPortal for Cancer Genomics

Cancer Res (2024) 84 (6_Supplement): 1249.

https://doi.org/10.1158/1538-7445.AM2024-1249

Published: 22 March 2024

View article titled, Abstract 1249: cBioPortal for Cancer Genomics

Journal Articles

Abstract 3785: Clinical and genomic characterization of melanoma brain metastases

Cancer Res (2024) 84 (6_Supplement): 3785.

https://doi.org/10.1158/1538-7445.AM2024-3785

Published: 22 March 2024

View article titled, Abstract 3785: Clinical and genomic characterization of melanoma brain metastases

Journal Articles

Abstract 3779: Genomic and clinical characterization of metastatic patterns using real-word data from a large cohort of colorectal cancer patients

Paolo Manca, Ayush V. Kris, Henry Walch, Christopher Fong, Justin Jee, Karl Pichotta, Nikolaus Schultz, Walid K. Chatila, Rona Yaeger, Francisco Sanchez-Vega

Cancer Res (2024) 84 (6_Supplement): 3779.

https://doi.org/10.1158/1538-7445.AM2024-3779

Published: 22 March 2024

View article titled, Abstract 3779: Genomic and clinical characterization of metastatic patterns using real-word data from a large cohort of colorectal cancer patients

Journal Articles

Abstract 911: Automatic identification of subjective appetite or weight loss in clinician notes empowers studies of cachexia

Tricia Park, Karl Pichotta, Christopher J. Fong, Nikolaus Schultz, Puneeth Iyengar, Justin Jee, Ed Reznik

Cancer Res (2024) 84 (6_Supplement): 911.

https://doi.org/10.1158/1538-7445.AM2024-911

Published: 22 March 2024

View article titled, Abstract 911: Automatic identification of subjective appetite or weight loss in clinician notes empowers studies of cachexia

Journal Articles

Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Amanda Dhaneshwar, Nicole Fernandez, Benjamin Preiser, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Aijazuddin Syed, A. Rose Brannon, Ross Levine, Ahmet Dogan, Alexander Drilon, David B. Solit, Nikolaus Schultz, Debyani Chakravarty

Cancer Res (2024) 84 (6_Supplement): 3544.

https://doi.org/10.1158/1538-7445.AM2024-3544

Published: 22 March 2024

View article titled, Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Journal Articles

Abstract 6836: Single-cell RNA sequencing of FUS::DDIT3 myxoid/round cell liposarcoma delineates mechanisms of oncogenic progression and immune escape

Rodrigo Gularte-Mérida, Evan Seffar, George Li, Young-Mi Kim, Narasimhan P. Agaram, Nicholas Socci, Francisco Sanchez-Vega, Nikolaus Schultz, Samuel Singer

Cancer Res (2024) 84 (6_Supplement): 6836.

https://doi.org/10.1158/1538-7445.AM2024-6836

Published: 22 March 2024

View article titled, Abstract 6836: Single-cell RNA sequencing of FUS::DDIT3 myxoid/round cell liposarcoma delineates mechanisms of oncogenic progression and immune escape

Journal Articles

Abstract C074: Clinico-genomic characterization of N=2,460 pancreatic adenocarcinoma identifies KRASMUT dosage as prognostic of overall survival across disease stages

Anna M. Varghese, Maria A. Perry, Daniel Muldoon, Subhiksha Nandakumar, Amanda Erakky, Bastien Nguyen, Amanda Zucker, Hulya Sahin Ozkan, Olca Basturk, Debyani Chakravarty, David P. Kelsen, Wungki Park, Kenneth H. Yu, Alice C. Wei, Nikolaus Schultz, Michael F. Berger, Christine Iacobuzio-Donahue, Chaitanya Bandlamudi, Eileen M. O'Reilly

Cancer Res (2024) 84 (2_Supplement): C074.

https://doi.org/10.1158/1538-7445.PANCA2023-C074

Published: 16 January 2024

View article titled, Abstract C074: Clinico-genomic characterization of N=2,460 pancreatic adenocarcinoma identifies <em>KRASMUT</em> dosage as prognostic of overall survival across disease stages

Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin Gross, Charles Haynes, Allison Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C. Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

Cancer Res (2023) 83 (23): 3861–3867.

https://doi.org/10.1158/0008-5472.CAN-23-0816

Published: 01 December 2023

View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Includes: Supplementary data

Journal Articles

Abstract 1908: Clinical genomic profiling identifies lower frequency of therapeutically actionable alterations and lower prognostic value of APC inactivation in colorectal cancer patients of African ancestry

Henry Walch, Anisha Luthra, Kanika S. Arora, Michele Waters, Samantha Chin, Christopher J. Fong, Doori Rose, Hannah Williams, Jeese J. Smith, Nikolaus Schultz, Michael F. Berger, Karuna Ganesh, Julio Garcia-Aguilar, Rona Yaeger, Walid K. Chatila, Francisco Sanchez-Vega

Cancer Res (2023) 83 (7_Supplement): 1908.

https://doi.org/10.1158/1538-7445.AM2023-1908

Published: 29 May 2023

View article titled, Abstract 1908: Clinical genomic profiling identifies lower frequency of therapeutically actionable alterations and lower prognostic value of APC inactivation in colorectal cancer patients of African ancestry

Journal Articles

Correction: ARF Confers a Context-Dependent Response to Chemotherapy in Muscle-Invasive Bladder Cancer

Tomasz B. Owczarek, Takashi Kobayashi, Ricardo Ramirez, Lijie Rong, Anna M. Puzio-Kuter, Gopa Iyer, Min Yuen Teo, Francisco Sánchez-Vega, Jingqiang Wang, Nikolaus Schultz, Tian Zheng, David B. Solit, Hikmat A. Al-Ahmadie, Cory Abate-Shen

Cancer Res (2023) 83 (7): 1159.

https://doi.org/10.1158/0008-5472.CAN-23-0518

Published: 04 April 2023

View article titled, Correction: ARF Confers a Context-Dependent Response to Chemotherapy in Muscle-Invasive Bladder Cancer

Journal Articles

Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

Cancer Res (2023) 83 (7_Supplement): 6585.

https://doi.org/10.1158/1538-7445.AM2023-6585

Published: 04 April 2023

View article titled, Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

NARROW

Abstract PO5-16-01: Clinicogenomic analysis reveals genomic associations of brain metastatic tropism in breast cancer

Abstract 1009: Direct partnering with employers and unions diversifies cancer center access

Abstract 3703: Utility of circulating tumor DNA (ctDNA) from cerebrospinal fluid (CSF) for prognosis of patients with recurrent high grade glioma

Abstract 6129: Emerging disparities in the clinical actionability landscape for patients with inferred African ancestry

Abstract 6123: Validating cancer modulated allostatic load as a composite biomarker for mortality in patients with cancer

Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Abstract 1252: AI-derived predictions improve identification of real-world cancer driver mutations

Abstract 1202: Signatures of selection for biallelic inactivation in tumor suppressor genes across cancer types

Abstract 2556: Longitudinal analyses of clinical sequencing data provide novel insights into the evolutionary dynamics of lung adenocarcinoma

Abstract 1249: cBioPortal for Cancer Genomics

Abstract 3785: Clinical and genomic characterization of melanoma brain metastases

Abstract 3779: Genomic and clinical characterization of metastatic patterns using real-word data from a large cohort of colorectal cancer patients

Abstract 911: Automatic identification of subjective appetite or weight loss in clinician notes empowers studies of cachexia

Abstract 3544: OncoKB™, MSK’s precision oncology knowledge base: 2023 updates

Abstract 6836: Single-cell RNA sequencing of FUS::DDIT3 myxoid/round cell liposarcoma delineates mechanisms of oncogenic progression and immune escape

Abstract C074: Clinico-genomic characterization of N=2,460 pancreatic adenocarcinoma identifies KRASMUT dosage as prognostic of overall survival across disease stages

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Abstract 1908: Clinical genomic profiling identifies lower frequency of therapeutically actionable alterations and lower prognostic value of APC inactivation in colorectal cancer patients of African ancestry

Correction: ARF Confers a Context-Dependent Response to Chemotherapy in Muscle-Invasive Bladder Cancer

Abstract 6585: OncoKB, MSK’s precision oncology knowledge base

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