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Journal Articles

RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDB

William C. Reinhold, Sudhir Varma, Margot Sunshine, Fathi Elloumi, Kwabena Ofori-Atta, Sunmin Lee, Jane B. Trepel, Paul S. Meltzer, James H. Doroshow, Yves Pommier

Cancer Res (2019) 79 (13): 3514–3524.

DOI: https://doi.org/10.1158/0008-5472.CAN-18-2047

Published: 01 July 2019

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Includes: Supplementary data

Journal Articles

Abstract 2290: CellMiner and CellMiner Cross-Database (CDB) as a foundation for the exploration of pharmacogenomics through the use of cancerous cell-lines

William C. Reinhold, Margot Sunshine, Sudir Varma, Fathi Elloumi, Yves Pommier, M.D., Ph.D.

Cancer Res (2018) 78 (13_Supplement): 2290.

DOI: https://doi.org/10.1158/1538-7445.AM2018-2290

Published: 01 July 2018

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Journal Articles

The NCI-60 Methylome and Its Integration into CellMiner

William C. Reinhold, Sudhir Varma, Margot Sunshine, Vinodh Rajapakse, Augustin Luna, Kurt W. Kohn, Holly Stevenson, Yonghong Wang, Holger Heyn, Vanesa Nogales, Sebastian Moran, David J. Goldstein, James H. Doroshow, Paul S. Meltzer, Manel Esteller, Yves Pommier

Cancer Res (2017) 77 (3): 601–612.

DOI: https://doi.org/10.1158/0008-5472.CAN-16-0655

Published: 31 January 2017

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Includes: Supplementary data

Journal Articles

Abstract 75: CellMiner, a systems pharmacological web-application for the NCI-60 cancerous cell-lines: Updates, data integration, and translationally relevant results

William C. Reinhold, Margot Sunshine, Sudir Varma, James Doroshow, Yves Pommier

Cancer Res (2016) 76 (14_Supplement): 75.

DOI: https://doi.org/10.1158/1538-7445.AM2016-75

Published: 15 July 2016

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Journal Articles

Abstract 3749: Uses and update for CellMiner, a tool for access to and comparison of molecular data and pharmacological response for the NCI-60

William C. Reinhold, Margot Sunshine, Sudir Varma, Vinodh Rajapakse, James Doroshow, Joel Morris, Yves Pmmier

Cancer Res (2015) 75 (15_Supplement): 3749.

DOI: https://doi.org/10.1158/1538-7445.AM2015-3749

Published: 01 August 2015

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Journal Articles

Abstract 5327: Using CellMiner for gene expression, DNA copy number, microRNA transcript levels, variant status, drug activity, and their integration for systems pharmacology for the NCI-60

William C. Reinhold, Margot Sunshine, Sudir Varma, Joel Morris, Kurt Kohn, James Doroshow, Yves Pommier

Cancer Res (2014) 74 (19_Supplement): 5327.

DOI: https://doi.org/10.1158/1538-7445.AM2014-5327

Published: 01 October 2014

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Journal Articles

Abstract 3177: Web-based access using CellMiner for gene expression, DNA copy number, microRNA transcript levels, variant status, drug activity, and their pattern comparisons for the NCI-60.

William C. Reinhold, Margot Sunshine, Sudir Varma, Hongfang Liu, Ogan Abaan, Paul Meltzer, Joel Morris, Kurt Kohn, James Doroshow, Yves Pommier

Cancer Res (2013) 73 (8_Supplement): 3177.

DOI: https://doi.org/10.1158/1538-7445.AM2013-3177

Published: 15 April 2013

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Journal Articles

CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set

William C. Reinhold, Margot Sunshine, Hongfang Liu, Sudhir Varma, Kurt W. Kohn, Joel Morris, James Doroshow, Yves Pommier

Cancer Res (2012) 72 (14): 3499–3511.

DOI: https://doi.org/10.1158/0008-5472.CAN-12-1370

Published: 15 July 2012

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Journal Articles

Abstract 2991: Web-based access for whole genome analyses of gene expression, DNA copy number, microRNA transcript levels, drug activity, and their pattern comparisons for the NCI-60

William C. Reinhold, Margot Sunshine, Sudir Varma, Hongfang Liu, John N. Weinstein, Joel Morris, James Doroshow, Yves Pommier

Cancer Res (2012) 72 (8_Supplement): 2991.

DOI: https://doi.org/10.1158/1538-7445.AM2012-2991

Published: 15 April 2012

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Journal Articles

Spotlight on molecular profiling: multi-faceted characterization of the NCI-60 cancer cell lines at the DNA, RNA, protein, functional, and pharmacological levels

John Weinstein, Uma Shankavaram, William Reinhold, Philip Lorenzi, Ogechi Ikediobi, Kimberly Bussey, Uwe Scherf, Joseph Ludwig, Satoshi Nishizuka, Krishna Chary, David Kane, Margot Sunshine, Eric Kaldjian, Yves Pommier, Natasha Caplen, Daniel Von Hoff

Cancer Res (2007) 67 (9_Supplement): 5683.

Published: 01 May 2007

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Journal Articles

Practical bioinformatic tools you can use for biomarker and molecular target research: integrating genomics, proteomics, and pharmacology

Cancer Res (2005) 65 (9_Supplement): 384.

Published: 01 May 2005

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Journal Articles

Cancer Biomedical Informatics Grid (caBIG) pilot projects: GoMiner and the NCI-60 molecular databases.

John N. Weinstein, Barry Zeeburg, Uma Shankavarum, William Reinhold, Ari Kahn, Robert Sfeir, Margot Sunshine, Sudarshan Narasimhan, Hong Cao, David Kane

Cancer Res (2005) 65 (9_Supplement): 7.

Published: 01 May 2005

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Journal Articles

Developing bioinformatic tools for integrating DNA, RNA, protein, and pharmacological data: The “integromic” enterprise.

John N. Weinstein, William C. Reinhold, Satoshi Nishizuka, Sylvia M. Major, Uma Shankavaram, Kimberly Bussey, Joseph Ludwig, Kurt W. Kohn, Yves Pommier, Barry Zeeberg, Sohyoung Kim, Samir Lababidi, Paul Blower, Margot Sunshine, Sudarshan Narasimhan, Hong Cao, Ike Nnabugwu, J. Carl Barrett, David Kane Kane

Cancer Res (2004) 64 (7_Supplement): 754.

Published: 01 April 2004

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NARROW

RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDB

Abstract 2290: CellMiner and CellMiner Cross-Database (CDB) as a foundation for the exploration of pharmacogenomics through the use of cancerous cell-lines

The NCI-60 Methylome and Its Integration into CellMiner

Abstract 75: CellMiner, a systems pharmacological web-application for the NCI-60 cancerous cell-lines: Updates, data integration, and translationally relevant results

Abstract 3749: Uses and update for CellMiner, a tool for access to and comparison of molecular data and pharmacological response for the NCI-60

Abstract 5327: Using CellMiner for gene expression, DNA copy number, microRNA transcript levels, variant status, drug activity, and their integration for systems pharmacology for the NCI-60

Abstract 3177: Web-based access using CellMiner for gene expression, DNA copy number, microRNA transcript levels, variant status, drug activity, and their pattern comparisons for the NCI-60.

CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set

Abstract 2991: Web-based access for whole genome analyses of gene expression, DNA copy number, microRNA transcript levels, drug activity, and their pattern comparisons for the NCI-60

Spotlight on molecular profiling: multi-faceted characterization of the NCI-60 cancer cell lines at the DNA, RNA, protein, functional, and pharmacological levels

Practical bioinformatic tools you can use for biomarker and molecular target research: integrating genomics, proteomics, and pharmacology

Cancer Biomedical Informatics Grid (caBIG) pilot projects: GoMiner and the NCI-60 molecular databases.

Developing bioinformatic tools for integrating DNA, RNA, protein, and pharmacological data: The “integromic” enterprise.

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