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Journal Articles

Abstract LB263: A transcriptomic signature predicts mortality risk and immune checkpoint inhibitor response beyond molecular and morphological features in lung adenocarcinoma from never smokers

Free
Wei Zhao, Tongwu Zhang, Xing Hua, Phuc H. Hoang, Mona Miraftab, Monjoy Saha, John P. McElderry, Jian Sang, Olivia Lee, Caleb Hartman, Azhar Khandekar, Sunandini Sharma, Frank J. Colón-Matos, Samuel Anyaso-Samuel, Defei Wang, Kristine Jones, Amy Hutchinson, Belynda Hicks, Jennifer Rosenbaum, Xiaoming Zhong, Yang Yang, Angela Pesatori, Dario Consonni, Karun Mutreja, Scott Lawrence, Nathaniel Rothman, Ludmil B. Alexandrov, Charles Leduc, Marina K. Baine, Philippe Joubert, Lynette M. Sholl, William D. Travis, Robert Homer, Qing Lan, Stephen J. Chanock, Lixing Yang, Soo-Ryum Yang, Jianxin Shi, Maria Teresa Landi
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_2): LB263.
https://doi.org/10.1158/1538-7445.AM2025-LB263
Published: 25 April 2025
View articletitled, Abstract LB263: A transcriptomic signature predicts mortality risk and immune checkpoint inhibitor response beyond molecular and morphological features in lung adenocarcinoma from never smokers
Journal Articles

Abstract LB226: Deciphering lung adenocarcinoma evolution and the role of LINE-1 retrotransposition

Free
Tongwu Zhang, Wei Zhao, Christopher Wirth, Marcos Díaz-Gay, Jinhu Yin, Phuc H. Hoang, Jian Sang, John McElderry, Alyssa Klein, Azhar Khandekar, Caleb Hartman, Jennifer Rosenbaum, Frank Colon-Matos, Kristine M. Jones, Neil E. Caporaso, Robert Homer, Angela C. Pesatori, Dario Consonni, Lixing Yang, Bin Zhu, Jianxin Shi, Kevin Brown, Nathaniel Rothman, Stephen J. Chanock, Ludmil B. Alexandrov, Jiyeon Choi, Maurizio Cardelli, Qing Lan, Martin A. Nowak, David C. Wedge, Maria Teresa Landi
Journal: Cancer Research
Cancer Res (2024) 84 (7_Supplement): LB226.
https://doi.org/10.1158/1538-7445.AM2024-LB226
Published: 05 April 2024
View articletitled, Abstract LB226: Deciphering lung adenocarcinoma evolution and the role of LINE-1 retrotransposition
Journal Articles

Abstract LB228: Evolutionary trajectories of lung cancer in never smokers

Free
Christopher Wirth, Tongwu Zhang, Wei Zhao, Phuc Hoang, Jian Sang, Nathaniel Rothman, Marcos Díaz-Gay, Ruxandra Teslo, Naser Ansari-Pour, Máire Ní Leathlobhair, Iliana Peneva, William Eagles, Lixing Yang, Ludmil Alexandrov, David C. Wedge, Maria Teresa Landi
Journal: Cancer Research
Cancer Res (2024) 84 (7_Supplement): LB228.
https://doi.org/10.1158/1538-7445.AM2024-LB228
Published: 05 April 2024
View articletitled, Abstract LB228: Evolutionary trajectories of lung cancer in never smokers
Journal Articles

Abstract 299: Large tandem duplications in cancer resulting from transcription and DNA replication collisions

Free
Yang Yang, Michelle Badura, Patrick O’Leary, Emily Egusa, Troy Robinson, Xiaoming Zhong, Jason Swinderman, Minkyu Kim, Haolong Li, Alan Ashworth, Felix Feng, Jonathan Chou, Lixing Yang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 299.
https://doi.org/10.1158/1538-7445.AM2023-299
Published: 04 April 2023
View articletitled, Abstract 299: Large tandem duplications in cancer resulting from transcription and DNA replication collisions
Journal Articles

Abstract 3136: HYENA detects non-coding genes activated by distal enhancers in cancer

Free
Anqi Yu, Ali E. Yesilkanal, Ashish Thakur, Fan Wang, Xiaoyang Wu, Alexander Muir, Xin He, Francois Spitz, Lixing Yang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3136.
https://doi.org/10.1158/1538-7445.AM2023-3136
Published: 04 April 2023
View articletitled, Abstract 3136: HYENA detects non-coding genes activated by distal enhancers in cancer
Journal Articles

Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway

Free
Jian Carrot-Zhang, Siddhartha Devarakonda, Nicolas Robine, Xiaotong Yao, Tiago C. Silva, Jeff Damrauer, Aditya Deshpande, Ming-Sound Tsao, Christina Yao, Chris Wong, Lisui Bao, Hyo Young Choi, Ina Felau, Jean C. Zenklusen, Gordon Robertson, Tuan Trieua, Wei-Wei Liang, Meng Zhou, Esther Rheinbay, Neil Hayes, Ekta Khurana, Li Ding, Peter Laird, Olivier Elemento, John Weinstein, David Kwiatkowski, Chris Benz, Josh Stuart, Lixing Yang, Mauro Castro, William Travis, Katherine Hoadley, Ben Berman, TCGA Analysis Network, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5895.
https://doi.org/10.1158/1538-7445.AM2020-5895
Published: 15 August 2020
View articletitled, Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway
Journal Articles

Abstract LB-210: An enhanced tumor evolution model for colorectal cancer evolution

Free
Lixing Yang
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): LB-210.
https://doi.org/10.1158/1538-7445.AM2019-LB-210
Published: 01 July 2019
View articletitled, Abstract LB-210: An enhanced tumor evolution model for colorectal cancer evolution
Journal Articles

Abstract LB-378: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Free
Isidro Cortés-Ciriano, June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L. Jung, Lixing Yang, Dmitry Gordenin, Leszek J. Klimczak, Cheng-Zhong Zhang, David S. Pellman, Peter J. Park
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): LB-378.
https://doi.org/10.1158/1538-7445.AM2018-LB-378
Published: 01 July 2018
View articletitled, Abstract LB-378: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
Journal Articles

Engineering and Functional Characterization of Fusion Genes Identifies Novel Oncogenic Drivers of Cancer

Free
Hengyu Lu, Nicole Villafane, Turgut Dogruluk, Caitlin L. Grzeskowiak, Kathleen Kong, Yiu Huen Tsang, Oksana Zagorodna, Angeliki Pantazi, Lixing Yang, Nicholas J. Neill, Young Won Kim, Chad J. Creighton, Roel G. Verhaak, Gordon B. Mills, Peter J. Park, Raju Kucherlapati, Kenneth L. Scott
Journal: Cancer Research
Cancer Res (2017) 77 (13): 3502–3512.
https://doi.org/10.1158/0008-5472.CAN-16-2745
Published: 02 July 2017
View articletitled, Engineering and Functional Characterization of Fusion Genes Identifies Novel Oncogenic Drivers of Cancer
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Includes: Supplementary data