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Kornelia Polyak
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Journal Articles

Abstract PR001: An immunomodulatory crosstalk between cancer cells and the hepatic microenvironment underlies mutant estrogen receptor-driven breast cancer-to-liver metastasis

Sunny Das, Joana Liu Donaher, Lisa Verhoeven, Ranjan Mishra, Ferenc Reinhardt, Sumeet Gupta, Zheqi Li, Kornelia Polyak, Robert A. Weinberg
Journal: Cancer Research
Cancer Res (2024) 84 (22_Supplement): PR001.
https://doi.org/10.1158/1538-7445.TUMBODY-PR001
Published: 17 November 2024
View article titled, Abstract PR001: An immunomodulatory crosstalk between cancer cells and the hepatic microenvironment underlies mutant estrogen receptor-driven breast cancer-to-liver metastasis
Journal Articles

Abstract PS09-02: Event-free Survival by Residual Cancer Burden (RCB) and Intratumor HER2 Heterogeneity after Neoadjuvant T-DM1 and Pertuzumab for Early-stage HER2-positive Breast Cancer

Otto Metzger, Se Eun Kim, Nabihah Tayob, Giuseppe Viale, Denise Yardley, Aleix Prat, Vandana Abramson, Laura Spring, Adrienne Waks, Eileen Wrabel, Michelle DeMeo, Aditya Bardia, Patrizia Dell'Orto, Leila Russo, Tari King, Franziska Michor, Eric Winer, Kornelia Polyak, Sara Tolaney, Ian Krop
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PS09-02.
https://doi.org/10.1158/1538-7445.SABCS23-PS09-02
Published: 02 May 2024
View article titled, Abstract PS09-02: Event-free Survival by Residual Cancer Burden (RCB) and Intratumor HER2 Heterogeneity after Neoadjuvant T-DM1 and Pertuzumab for Early-stage HER2-positive Breast Cancer
Journal Articles

Abstract PO3-16-03: Investigating HER2DX genomic assay concordance within HER2-positive breast cancer

Fara Brasó-Maristany, Laia Paré, Guillermo Villacampa, Mercedes Marín-Aguilera, Paul Spellman, Adrienne Waks, Ian Krop, Esther Sanfeliu, Zhequi Li, Patricia Galván, Eva Hernández-Illán, Pedro Jares, Joan Antón Puig-Butillé, Ana Vivancos, Patricia Villagrasa, Joel S. Parker, Charles M. Perou, Sara Tolaney, Otto Metzger, Kornelia Polyak, Aleix Prat
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO3-16-03.
https://doi.org/10.1158/1538-7445.SABCS23-PO3-16-03
Published: 02 May 2024
View article titled, Abstract PO3-16-03: Investigating HER2DX genomic assay concordance within HER2-positive breast cancer
Journal Articles

Abstract B008: KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping

Zheqi Li, Guillermo Peluffo, Laura Stevens, Xintao Qiu, Marco Seehawer, Xiao-Yun Huang, Shawn Egri, Malvina Papanastasiou, Natalie Kingston, Clive D'Santos, Eva Papachristou, Jun Nishida, Kyle Evans, Ji-Heui Seo, Kendell Clement, Daniel Temko, Muhammad Ekram, Matthew Rees, Melissa Ronan, Jennifer Roth, Anton Simeonov, Stephen Kales, Ganesha Rai, Madhu Lal-Nag, David Maloney, Ajit Jadhav, Franziska Michor, Alex Meissner, Justin Balko, Jason Carroll, Matthew Freedman, Henry Long, Jacob Jaffe, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_1): B008.
https://doi.org/10.1158/1538-7445.ADVBC23-B008
Published: 01 February 2024
View article titled, Abstract B008: KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping
Journal Articles

Abstract B053: The role of whole genome doubling in immune escape in TNBC

Pierre Foidart, Zheqi Li, Marco Seehawer, Jun Nishida, Ernesto Rojas, Triet Bui, Pengze Yan, Marie-Anne Goyette, Laura Stevens, Xiao-Yun Huang, Jayati Anand, Gouri Nanjangud, Yingtian Xie, Xintao Qiu, Paloma Cejas, Henry Long, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_1): B053.
https://doi.org/10.1158/1538-7445.ADVBC23-B053
Published: 01 February 2024
View article titled, Abstract B053: The role of whole genome doubling in immune escape in TNBC
Journal Articles

JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States

Laura E. Stevens, Guillermo Peluffo, Xintao Qiu, Daniel Temko, Anne Fassl, Zheqi Li, Anne Trinh, Marco Seehawer, Bojana Jovanović, Maša Alečković, Callahan M. Wilde, Renee C. Geck, Shaokun Shu, Natalie L. Kingston, Nicholas W. Harper, Vanessa Almendro, Alanna L. Pyke, Shawn B. Egri, Malvina Papanastasiou, Kendell Clement, Ningxuan Zhou, Sarah Walker, Jacqueline Salas, So Yeon Park, David A. Frank, Alexander Meissner, Jacob D. Jaffe, Piotr Sicinski, Alex Toker, Franziska Michor, Henry W. Long, Beth A. Overmoyer, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2023) 83 (2): 264–284.
https://doi.org/10.1158/0008-5472.CAN-22-0423
Published: 18 January 2023
View article titled, JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States
Open the PDF for JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States in another window
Includes: Supplementary data
Journal Articles

Abstract A020: Histone modification by Kmt2c and Kmt2d regulate metastasis in triple-negative breast cancer in vivo

Marco Seehawer, Zheqi Li, Jun Nishida, Paloma Cejas, Andrew Reiter, Seth Goldman, Pierre Foidart, Ernesto Rojas, Malvina Papanastasiou, Karen Adelman, Henry Long, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2022) 82 (23_Supplement_2): A020.
https://doi.org/10.1158/1538-7445.CancEpi22-A020
Published: 01 December 2022
View article titled, Abstract A020: Histone modification by Kmt2c and Kmt2d regulate metastasis in triple-negative breast cancer in vivo
Journal Articles

Abstract A018: KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping

Zheqi Li, Guillermo Peluffo, Laura E. Stevens, Xintao Qiu, Shawn B. Egri, Malvina Papanastasiou, Natalie Kingston, Clive S. D'Santos, Eva Papachristou, Kyle Evans, Ji-Heui Seo, Kendell Clement, Daniel Temko, Muhammad Ekram, Anton Simeonov, Stephen C. Kales, Ganesha Rai, Madhu Lal-Nag, David J. Maloney, Ajit Jadhav, Franziska Michor, Alex Meissner, Jason S. Carroll, Matthew L. Freedman, Henry W. Long, Jacob D. Jaffe, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2022) 82 (23_Supplement_2): A018.
https://doi.org/10.1158/1538-7445.CancEpi22-A018
Published: 01 December 2022
View article titled, Abstract A018: KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping
Journal Articles

Abstract A023: Sensitivity/resistance mechanisms to KDM5 inhibition in basal breast cancer

Benedetto DiCiaccio, Evangelia Papachristou, Malvina Papanastasiou, Andrew Reiter, Jason Carroll, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2022) 82 (23_Supplement_2): A023.
https://doi.org/10.1158/1538-7445.CancEpi22-A023
Published: 01 December 2022
View article titled, Abstract A023: Sensitivity/resistance mechanisms to KDM5 inhibition in basal breast cancer
Journal Articles

Abstract GS4-07: The Breast PreCancer Atlas DCIS genomic signatures define biology and correlate with clinical outcomes: An analysis of TBCRC 038 and RAHBT cohorts

Siri H Strand, Belén Rivero-Gutiérrez, Kathleen E Houlahan, Jose A Seoane, Lorraine M King, Tyler Risom, Lunden Simpson, Sujay Vennam, Aziz Khan, Timothy Hardman, Bryan E Harmon, Fergus J Couch, Kristalyn Gallagher, Mark Kilgore, Shi Wei, Angela DeMichele, Tari King, Priscilla F McAuliffe, Julie Nangia, Joanna Lee, Jennifer Tseng, Anna Maria Storniolo, Alastair Thompson, Gaorav Gupta, Robyn Burns, Deborah J Veis, Katherine DeSchryver, Chunfang Zhu, Magdalena Matusiak, Jason Wang, Shirley X Zhu, Jen Tappenden, Daisy Yi Ding, Dadong Zhang, Jingqin Luo, Shu Jiang, Sushama Varma, Cody Straub, Sucheta Srivastava, Christina Curtis, Rob Tibshirani, Robert Michael Angelo, Allison Hall, Kouros Owzar, Kornelia Polyak, Carlo Maley, Jeffrey R Marks, Graham A Colditz, E Shelley Hwang, Robert B West
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): GS4-07.
https://doi.org/10.1158/1538-7445.SABCS21-GS4-07
Published: 15 February 2022
View article titled, Abstract GS4-07: The Breast PreCancer Atlas DCIS genomic signatures define biology and correlate with clinical outcomes: An analysis of TBCRC 038 and RAHBT cohorts
Journal Articles

The MCF10 Model of Breast Tumor Progression

Julieann Puleo, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2021) 81 (16): 4183–4185.
https://doi.org/10.1158/0008-5472.CAN-21-1939
Published: 15 August 2021
View article titled, The MCF10 Model of Breast Tumor Progression
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Journal Articles

Abstract IA005: Immune escape during breast tumor progression

Kornelia Polyak
Journal: Cancer Research
Cancer Res (2021) 81 (5_Supplement): IA005.
https://doi.org/10.1158/1538-7445.TME21-IA005
Published: 01 March 2021
View article titled, Abstract IA005: Immune escape during breast tumor progression
Journal Articles

Abstract PD5-08: The human tumor atlas network (HTAN) breast pre cancer atlas: A multi-omic integrative analysis of ductal carcinoma in situ (DCIS) and correlation with clinical outcomes

Shelley Hwang, Siri H Strand, Belen Rivero, Lorraine King, Tyler Risom, Bryan Harmon, Fergus Couch, Kristalyn Gallagher, Mark Kilgore, Shi Wei, Angela DeMichele, Tari King, Priscilla McAuliffe, Julie Nangia, Ana Maria Storniolo, Alastair Thompson, Gaorav Gupta, Joanna Lee, Jennifer Tseng, Robyn Burns, ChunFang Zhu, Magda Matusiak, Shirley X Zhu, Jason Wang, Jose Seoane, Jen Tappenden, Daisy Ding, Dadong Zhang, Jingqin Luo, Sujay Vennam, Sushama Varma, Lunden Simpson, Luis Cisneros, Timmothy Hardman, Lauren Anderson, Cody Straub, Sucheta Srivastava, Deb J Veis, Christina Curtis, Rob Tibshirani, Robert Michael Angelo, Allison Hall, Kouros Owzar, Kornelia Polyak, Carlo Maley, Jeff Marks, Graham Colditz, Robert B West
Journal: Cancer Research
Cancer Res (2021) 81 (4_Supplement): PD5-08.
https://doi.org/10.1158/1538-7445.SABCS20-PD5-08
Published: 15 February 2021
View article titled, Abstract PD5-08: The human tumor atlas network (HTAN) breast pre cancer atlas: A multi-omic integrative analysis of ductal carcinoma in situ (DCIS) and correlation with clinical outcomes
Journal Articles

Abstract PO-059: The genomic landscape of the in situ to invasive ductal breast carcinoma transition shaped by the immune system

Anne Trinh, Carlos R. Gil Del Alcazar, Sachet A. Shukla, Koei Chin, Young Hwan Chen, Guillaume Thibault, Jennifer Eng, Bojana Jovanovic, C. Marcelo Aldaz, So Yeon Park, Joon Jong, Catherine Wu, Joe Gray, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-059.
https://doi.org/10.1158/1538-7445.TUMHET2020-PO-059
Published: 03 November 2020
View article titled, Abstract PO-059: The genomic landscape of the <em>in situ</em> to invasive ductal breast carcinoma transition shaped by the immune system
Journal Articles

Abstract IA26: Tumor evolution: From Darwin’s finches to breast cancer

Kornelia Polyak
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): IA26.
https://doi.org/10.1158/1538-7445.TUMHET2020-IA26
Published: 03 November 2020
View article titled, Abstract IA26: Tumor evolution: From Darwin’s finches to breast cancer
Journal Articles

EN1 Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis

Guillermo Peluffo, Ashim Subedee, Nicholas W. Harper, Natalie Kingston, Bojana Jovanović, Felipe Flores, Laura E. Stevens, Francisco Beca, Anne Trinh, Chandra Sekhar Reddy Chilamakuri, Evangelia K. Papachristou, Katherine Murphy, Ying Su, Andriy Marusyk, Clive S. D'Santos, Oscar M. Rueda, Andrew H. Beck, Carlos Caldas, Jason S. Carroll, Kornelia Polyak
Journal: Cancer Research
Series: Author Choice
Cancer Res (2019) 79 (16): 4173–4183.
https://doi.org/10.1158/0008-5472.CAN-18-3264
Published: 15 August 2019
View article titled, <em>EN1</em> Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis
Open the PDF for <em>EN1</em> Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis in another window
Includes: Supplementary data
Journal Articles

Mathematical Modeling Links Pregnancy-Associated Changes and Breast Cancer Risk

Daniel Temko, Yu-Kang Cheng, Kornelia Polyak, Franziska Michor
Journal: Cancer Research
Cancer Res (2017) 77 (11): 2800–2809.
https://doi.org/10.1158/0008-5472.CAN-16-2504
Published: 31 May 2017
View article titled, Mathematical Modeling Links Pregnancy-Associated Changes and Breast Cancer Risk
Open the PDF for Mathematical Modeling Links Pregnancy-Associated Changes and Breast Cancer Risk in another window
Journal Articles

Precancer Atlas to Drive Precision Prevention Trials

Avrum Spira, Matthew B. Yurgelun, Ludmil Alexandrov, Anjana Rao, Rafael Bejar, Kornelia Polyak, Marios Giannakis, Ali Shilatifard, Olivera J. Finn, Madhav Dhodapkar, Neil E. Kay, Esteban Braggio, Eduardo Vilar, Sarah A. Mazzilli, Timothy R. Rebbeck, Judy E. Garber, Victor E. Velculescu, Mary L. Disis, Douglas C. Wallace, Scott M. Lippman
Journal: Cancer Research
Cancer Res (2017) 77 (7): 1510–1541.
https://doi.org/10.1158/0008-5472.CAN-16-2346
Published: 02 April 2017
View article titled, Precancer Atlas to Drive Precision Prevention Trials
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Journal Articles

Spatial Proximity to Fibroblasts Impacts Molecular Features and Therapeutic Sensitivity of Breast Cancer Cells Influencing Clinical Outcomes

Andriy Marusyk, Doris P. Tabassum, Michalina Janiszewska, Andrew E. Place, Anne Trinh, Andrii I. Rozhok, Saumyadipta Pyne, Jennifer L. Guerriero, Shaokun Shu, Muhammad Ekram, Alexander Ishkin, Daniel P. Cahill, Yuri Nikolsky, Timothy A. Chan, Mothaffar F. Rimawi, Susan Hilsenbeck, Rachel Schiff, Kent C. Osborne, Antony Letai, Kornelia Polyak
Journal: Cancer Research
Series: Author Choice
Cancer Res (2016) 76 (22): 6495–6506.
https://doi.org/10.1158/0008-5472.CAN-16-1457
Published: 14 November 2016
View article titled, Spatial Proximity to Fibroblasts Impacts Molecular Features and Therapeutic Sensitivity of Breast Cancer Cells Influencing Clinical Outcomes
Open the PDF for Spatial Proximity to Fibroblasts Impacts Molecular Features and Therapeutic Sensitivity of Breast Cancer Cells Influencing Clinical Outcomes in another window
Includes: Supplementary data
Journal Articles

Abstract B24: Targeting hyaluronan sensitizes breast cancer-associated fibroblasts to lapatinib and overcomes stromal resistance

Andriy Marusyk, Doris Tabassum, Jennifer Guerriero, Andrew Place, Andrii Rozhok, Antony Letai, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2016) 76 (15_Supplement): B24.
https://doi.org/10.1158/1538-7445.TME16-B24
Published: 28 July 2016
View article titled, Abstract B24: Targeting hyaluronan sensitizes breast cancer-associated fibroblasts to lapatinib and overcomes stromal resistance