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Journal Articles

Abstract 2499: Window-of-opportunity trial of metastatic pancreatic cancer reveals potential mechanisms of response to targeting RAS signaling

Motoyuki Tsuda, Colin Daniel, Xiaoyan Wang, Carl Pelz, Hayley Zimny, Alexander Smith, John Muschler, Xi Li, Tugba Yildiran Ozmen, Furkan Ozmen, Dove Keith, Christopher Corless, Koei Chin, Jonathan Brody, Charles Lopez, Gordon Mills, Rosalie Sears
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 2499.
https://doi.org/10.1158/1538-7445.AM2024-2499
Published: 22 March 2024
View article titled, Abstract 2499: Window-of-opportunity trial of metastatic pancreatic cancer reveals potential mechanisms of response to targeting RAS signaling
Journal Articles

Abstract C087: Window-of-opportunity trial of metastatic pancreatic cancer reveals mechanisms of response to targeting RAS signaling

Motoyuki Tsuda, Colin J. Daniel, Carl Pelz, Sam Sivagnanam, Dove Keith, Christopher L. Corless, Koei Chin, Lisa M. Coussens, Jonathan R. Brody, Charles D. Lopez, Gordon B. Mills, Rosalie C. Sears
Journal: Cancer Research
Cancer Res (2024) 84 (2_Supplement): C087.
https://doi.org/10.1158/1538-7445.PANCA2023-C087
Published: 16 January 2024
View article titled, Abstract C087: Window-of-opportunity trial of metastatic pancreatic cancer reveals mechanisms of response to targeting RAS signaling
Journal Articles

Abstract A115: Collective invasion facilitates liver metastasis in pancreatic ductal adenocarcinoma

Jennifer R. Eng, Carl Pelz, Koei Chin, Sam Sivagnanam, Link M. Jason, Dove Keith, Lisa Coussens, Rosalie C. Sears
Journal: Cancer Research
Cancer Res (2024) 84 (2_Supplement): A115.
https://doi.org/10.1158/1538-7445.PANCA2023-A115
Published: 16 January 2024
View article titled, Abstract A115: Collective invasion facilitates liver metastasis in pancreatic ductal adenocarcinoma
Journal Articles

Abstract 6618: Longitudinal, multimodal profiling of metastatic ER+ breast cancer on CDK4/6 inhibitor therapy

Allison L. Creason, Julian Egger, Cameron Watson, Shamilene Sivagnanam, Jia-Ren Lin, Koei Chin, Peter K. Sorger, Lisa M. Coussens, Zahi I. Mitri, Joe W. Gray, Gordon B. Mills, Jeremy Goecks
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6618.
https://doi.org/10.1158/1538-7445.AM2023-6618
Published: 04 April 2023
View article titled, Abstract 6618: Longitudinal, multimodal profiling of metastatic ER+ breast cancer on CDK4/6 inhibitor therapy
Journal Articles

Abstract 5630: Robust spatial biomarker discovery through multi-platform multiplex image analysis of breast cancer clinical cohorts

Jennifer R. Eng, Elmar Bucher, Zhi Hu, Melinda Sanders, Bapsi Chakravarthy, Jennifer Pietenpol, Rosalie C. Sears, Summer Gibbs, Joe W. Gray, Koei Chin
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5630.
https://doi.org/10.1158/1538-7445.AM2023-5630
Published: 04 April 2023
View article titled, Abstract 5630: Robust spatial biomarker discovery through multi-platform multiplex image analysis of breast cancer clinical cohorts
Journal Articles

Abstract 6149: Prognostic tumor microenvironment subtypes in triple-negative breast cancer

Jennifer R. Eng, Elmar Bucher, Zhi Hu, Melinda Sanders, Bapsi Chakravarthy, Summer Gibbs, Koei Chin, Jennifer Pietenpol, Joe W. Gray
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 6149.
https://doi.org/10.1158/1538-7445.AM2022-6149
Published: 15 June 2022
View article titled, Abstract 6149: Prognostic tumor microenvironment subtypes in triple-negative breast cancer
Journal Articles

Abstract PO-059: The genomic landscape of the in situ to invasive ductal breast carcinoma transition shaped by the immune system

Anne Trinh, Carlos R. Gil Del Alcazar, Sachet A. Shukla, Koei Chin, Young Hwan Chen, Guillaume Thibault, Jennifer Eng, Bojana Jovanovic, C. Marcelo Aldaz, So Yeon Park, Joon Jong, Catherine Wu, Joe Gray, Kornelia Polyak
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-059.
https://doi.org/10.1158/1538-7445.TUMHET2020-PO-059
Published: 03 November 2020
View article titled, Abstract PO-059: The genomic landscape of the <em>in situ</em> to invasive ductal breast carcinoma transition shaped by the immune system
Journal Articles

Abstract PO-102: A novel disseminated tumor cell identified in myriad cancer harbors tumor initiating properties

Matthew S. Dietz, Thomas Sutton, Brett Walker, Young Hwan Chang, Koei Chin, Melissa H. Wong
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-102.
https://doi.org/10.1158/1538-7445.TUMHET2020-PO-102
Published: 03 November 2020
View article titled, Abstract PO-102: A novel disseminated tumor cell identified in myriad cancer harbors tumor initiating properties
Journal Articles

Abstract 3296: SMMART: Serial measurements of molecular and architectural responses to therapy

Brett Johnson, Jamie Keck, Max Morris, Kiara Siex, Annette Kolodzie, Swapnil Parmar, Jessica Riesterer, Koei Chin, Summer Gibbs, Laura Heiser, Paul Spellman, Kyle Ellrott, Ozgun Babur, Emek Demir, Adam Margolin, Jeremy Goecks, Lisa Coussens, Raymond Bergan, Joe Gray
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3296.
https://doi.org/10.1158/1538-7445.AM2018-3296
Published: 01 July 2018
View article titled, Abstract 3296: SMMART: Serial measurements of molecular and architectural responses to therapy
Journal Articles

Abstract LB-217: Microenvironment mediated mechanisms of resistance to HER2 inhibitors differ between HER2+ breast cancer subtypes

Spencer Watson, Joe Gray, James Korkola, Mark Dane, Laura Hesier, Koei Chin, Gordon Mills
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-217.
https://doi.org/10.1158/1538-7445.AM2017-LB-217
Published: 01 July 2017
View article titled, Abstract LB-217: Microenvironment mediated mechanisms of resistance to HER2 inhibitors differ between HER2+ breast cancer subtypes
Journal Articles

Abstract #LB-308: MicroRNA expression profiling in 40 breast cancer cell lines.

Molly Klein-McDowell, Graeme Hodgson, Wen-Lin Kuo, Debo Das, Andrei Goga, Chris Benz, Paul Yaswen, Joe Gray, Koei Chin
Journal: Cancer Research
Cancer Res (2009) 69 (9_Supplement): LB-308.
Published: 01 May 2009
View article titled, Abstract #LB-308: MicroRNA expression profiling in 40 breast cancer cell lines.
Journal Articles

Analysis of genomic disparity in ~230 breast cancer between African American and white women

Junko Suzuki, Takashi Uruno, Cylyn Cruz-Montero, Molly Klein-McDowell, Taku Tokuyasu, Ritu Roydasgupta, Sandy DeVries, Frederic Waldman, Karen Chew, William Grizzle, Joe Gray, Koei Chin
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): LB-280.
Published: 01 May 2008
View article titled, Analysis of genomic disparity in ~230 breast cancer between African American and white women
Journal Articles

MicroRNA expression profiling in ~40 breast cancer cell lines

Molly Klein-McDowell, Graeme Hodgson, Wen-Lin Kuo, Andrei Goga, Chris Benz, Joe Gray, Paul Yaswen, Koei Chin
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): 5010.
Published: 01 May 2008
View article titled, MicroRNA expression profiling in ~40 breast cancer cell lines
Journal Articles

Validating therapeutic targets on highly amplified chromosome regions in breast cancer

Zhi Hu, Shenda Gu, Nicholas Wang, Koei Chin, Joe Gray
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): 5840.
Published: 01 May 2008
View article titled, Validating therapeutic targets on highly amplified chromosome regions in breast cancer
Journal Articles

A Human Breast Cell Model of Preinvasive to Invasive Transition

Aylin Rizki, Valerie M. Weaver, Sun-Young Lee, Gabriela I. Rozenberg, Koei Chin, Connie A. Myers, Jamie L. Bascom, Joni D. Mott, Jeremy R. Semeiks, Leslie R. Grate, I. Saira Mian, Alexander D. Borowsky, Roy A. Jensen, Michael O. Idowu, Fanqing Chen, David J. Chen, Ole W. Petersen, Joe W. Gray, Mina J. Bissell
Journal: Cancer Research
Cancer Res (2008) 68 (5): 1378–1387.
https://doi.org/10.1158/0008-5472.CAN-07-2225
Published: 03 March 2008
View article titled, A Human Breast Cell Model of Preinvasive to Invasive Transition
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Includes: Supplementary data
Journal Articles

E-cadherin regulation in the NCI-60 cancer cells: an integrated analysis of E-cad promoter methylation, DNA copy number, transcription factor expression, and VDR influence.

William Reinhold, Mark Reimers, Philip Lorenzi, Jennifer Ho, Alika Maunakea, Sohyoung Kim, Ogetchi Ikediobi, Uwe Scherf, Uma Shankavaram, Micah Ziegler, Claudia Stewart, Hosein Kouros-Mehr, Hengmi Cui, Kimberly Bussey, Koei Chin, Joe Gray, Eric Kaljian, Satoshi Nishizuka, Dominic Scudiero, Yves Pommier, David Munroe, Andrew Feinebrg, John Weinstein
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 4507.
Published: 01 May 2007
View article titled, E-cadherin regulation in the NCI-60 cancer cells: an integrated analysis of E-cad promoter methylation, DNA copy number, transcription factor expression, and VDR influence.
Journal Articles

Assessment of genome aberrations of ~120 breast cancers in African American women

Takashi Uruno, Cylyn Cruz-Montero, Jane Fridlyand, Karen Chew, William Grizzle, Joe Gray, Koei Chin
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 2940.
Published: 01 May 2007
View article titled, Assessment of genome aberrations of ~120 breast cancers in African American women
Journal Articles

Utilization of SNP copy number analysis to identify allele specific copy number alterations in breast and ovarian cancer.

Nicholas J. Wang, Dione K. Bailey, Wen-Lin Kuo, Koei Chin, Paul T. Spellman, Joe W. Gray
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 1339–1340.
Published: 15 April 2006
View article titled, Utilization of SNP copy number analysis to identify allele specific copy number alterations in breast and ovarian cancer.
Journal Articles

A system to identify and validate baseline and biologic response predictors in breast cancer

Richard M. Neve, Koei Chin, Sandy Devries, Jennifer Yeh, Jean-Philippe Coppe, Jane Fridyland, Laura Clark, Nora Bayani, Frances Tong, Terry Speed, Joe W. Gray
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 793.
Published: 15 April 2006
View article titled, A system to identify and validate baseline and biologic response predictors in breast cancer
Journal Articles

Functional analyses of breast cancer genome.

Koei Chin, Sandy Devries, Jane Friedlyand, Taku Tokuyasu, Karen Chew, Paul Spellman, Richard Neve, Wen-Lin Kuo, Ajay Jain, Joe Gray, Fred Waldman
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 26–27.
Published: 01 May 2005
View article titled, Functional analyses of breast cancer genome.