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Kimberly R. Kalli
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Journal Articles

Abstract 4491: The mesenchymal subtype biomarkers arise from stroma rather than cancer cells in ovarian cancer

Qing Zhang, Kimberly R. Kalli, Chen Wang, William Cliby
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4491.
https://doi.org/10.1158/1538-7445.AM2018-4491
Published: 01 July 2018
View article titled, Abstract 4491: The mesenchymal subtype biomarkers arise from stroma rather than cancer cells in ovarian cancer
Journal Articles

IL10 Release upon PD-1 Blockade Sustains Immunosuppression in Ovarian Cancer

Purushottam Lamichhane, Lavakumar Karyampudi, Barath Shreeder, James Krempski, Deborah Bahr, Joshua Daum, Kimberly R. Kalli, Ellen L. Goode, Matthew S. Block, Martin J. Cannon, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2017) 77 (23): 6667–6678.
https://doi.org/10.1158/0008-5472.CAN-17-0740
Published: 30 November 2017
View article titled, IL10 Release upon PD-1 Blockade Sustains Immunosuppression in Ovarian Cancer
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Includes: Supplementary data
Journal Articles

Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer

Stacey J. Winham, Nicholas B. Larson, Sebastian M. Armasu, Zachary C. Fogarty, Melissa C. Larson, Kimberly R. Kalli, Kate Lawrenson, Simon Gayther, Brooke L. Fridley, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2420.
https://doi.org/10.1158/1538-7445.AM2017-2420
Published: 01 July 2017
View article titled, Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer
Journal Articles

Abstract 3368: Omics data integration analysis in high grade serous ovarian cancer: results from three studies

Yanina Natanzon, Madalene Earp, Julie M. Cunningham, Kimberly R. Kalli, Stacey J. Winham, Sebastian M. Armasu, Melissa C. Larson, Chen Wang, David D. Bowtell, Dale W. Garsed, Ellen Goode
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3368.
https://doi.org/10.1158/1538-7445.AM2017-3368
Published: 01 July 2017
View article titled, Abstract 3368: <em>Omics</em> data integration analysis in high grade serous ovarian cancer: results from three studies
Journal Articles

Abstract 440: Quantification of somatic chromosomal rearrangements in circulating cell-free DNA from ovarian cancers

Faye R. Harris, Irina Kovtun, James Smadbeck, Francesco Multinu, Aminah Jatoi, Kimberly R. Kalli, Stephen J. Murphy, Geoffrey C. Halling, Farhad Kosari, Sarah H. Johnson, Andrea Mariani, George Vasmatzis
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 440.
https://doi.org/10.1158/1538-7445.AM2016-440
Published: 15 July 2016
View article titled, Abstract 440: Quantification of somatic chromosomal rearrangements in circulating cell-free DNA from ovarian cancers
Journal Articles

Abstract 1833: Transcriptome characterization of high grade serous and endometrioid epithelial ovarian cancer tumors

Brooke L. Fridley, Junqiang Dai, Rama Raghavan, Chen Wang, Pengcheng Lu, Stacey Winham, Madalene Earp, Kate Lawrenson, Simon A. Gayther, Kimberly R. Kalli, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 1833.
https://doi.org/10.1158/1538-7445.AM2016-1833
Published: 15 July 2016
View article titled, Abstract 1833: Transcriptome characterization of high grade serous and endometrioid epithelial ovarian cancer tumors
Journal Articles

PD-1 Blunts the Function of Ovarian Tumor–Infiltrating Dendritic Cells by Inactivating NF-κB

Lavakumar Karyampudi, Purushottam Lamichhane, James Krempski, Kimberly R. Kalli, Marshall D. Behrens, Doris M. Vargas, Lynn C. Hartmann, Jo Marie T. Janco, Haidong Dong, Karen E. Hedin, Allan B. Dietz, Ellen L. Goode, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2016) 76 (2): 239–250.
https://doi.org/10.1158/0008-5472.CAN-15-0748
Published: 14 January 2016
View article titled, PD-1 Blunts the Function of Ovarian Tumor–Infiltrating Dendritic Cells by Inactivating NF-κB
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Includes: Supplementary data
Journal Articles

Abstract 1474: Characterization of 148 ovarian cancer tumografts (Avatars) using BROCA-HR deep sequencing

Kunal A. Lodhia, Marc A. Becker, Xiaonan Hou, Kimberly R. Kalli, Maria I. Harrell, Elizabeth M. Swisher, John S. Weroha, Paul Haluska
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 1474.
https://doi.org/10.1158/1538-7445.AM2015-1474
Published: 01 August 2015
View article titled, Abstract 1474: Characterization of 148 ovarian cancer tumografts (Avatars) using BROCA-HR deep sequencing
Journal Articles

Oncolytic Measles Virus Expressing the Sodium Iodide Symporter to Treat Drug-Resistant Ovarian Cancer

Evanthia Galanis, Pamela J. Atherton, Matthew J. Maurer, Keith L. Knutson, Sean C. Dowdy, William A. Cliby, Paul Haluska, Jr, Harry J. Long, Ann Oberg, Ileana Aderca, Matthew S. Block, Jamie Bakkum-Gamez, Mark J. Federspiel, Stephen J. Russell, Kimberly R. Kalli, Gary Keeney, Kah Whye Peng, Lynn C. Hartmann
Journal: Cancer Research
Cancer Res (2015) 75 (1): 22–30.
https://doi.org/10.1158/0008-5472.CAN-14-2533
Published: 04 January 2015
View article titled, Oncolytic Measles Virus Expressing the Sodium Iodide Symporter to Treat Drug-Resistant Ovarian Cancer
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Journal Articles

Abstract 1873: Plasma heat shock protein 90kDa beta member 1 levels predict both early stage and advanced stage ovarian cancer independently from cancer antigen 125 in patients with an indeterminate adnexal mass

Matthew S. Block, Matthew J. Maurer, Krista Goergen, Kimberly R. Kalli, Courtney L. Erskine, Marshall D. Behrens, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 1873.
https://doi.org/10.1158/1538-7445.AM2014-1873
Published: 01 October 2014
View article titled, Abstract 1873: Plasma heat shock protein 90kDa beta member 1 levels predict both early stage and advanced stage ovarian cancer independently from cancer antigen 125 in patients with an indeterminate adnexal mass
Journal Articles

Abstract 260: Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

Devin C. Koestler, Prabhakar Chalise, Mine S. Cicek, Julie M. Cunningham, Sebastian Armasu, Melissa C. Larson, Jeremy Chien, Matthew Block, Kimberly R. Kalli, Thomas A. Sellers, Ellen L. Goode, Brooke L. Fridley
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 260.
https://doi.org/10.1158/1538-7445.AM2014-260
Published: 01 October 2014
View article titled, Abstract 260: Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer
Journal Articles

Accumulation of Memory Precursor CD8 T Cells in Regressing Tumors following Combination Therapy with Vaccine and Anti-PD-1 Antibody

Lavakumar Karyampudi, Purushottam Lamichhane, Adam D. Scheid, Kimberly R. Kalli, Barath Shreeder, James W. Krempski, Marshall D. Behrens, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2014) 74 (11): 2974–2985.
https://doi.org/10.1158/0008-5472.CAN-13-2564
Published: 29 May 2014
View article titled, Accumulation of Memory Precursor CD8 T Cells in Regressing Tumors following Combination Therapy with Vaccine and Anti-PD-1 Antibody
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Includes: Supplementary data
Journal Articles

Tumor Hypomethylation at 6p21.3 Associates with Longer Time to Recurrence of High-Grade Serous Epithelial Ovarian Cancer

Chen Wang, Mine S. Cicek, Bridget Charbonneau, Kimberly R. Kalli, Sebastian M. Armasu, Melissa C. Larson, Gottfried E. Konecny, Boris Winterhoff, Jian-Bing Fan, Marina Bibikova, Jeremy Chien, Viji Shridhar, Matthew S. Block, Lynn C. Hartmann, Daniel W. Visscher, Julie M. Cunningham, Keith L. Knutson, Brooke L. Fridley, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2014) 74 (11): 3084–3091.
https://doi.org/10.1158/0008-5472.CAN-13-3198
Published: 29 May 2014
View article titled, Tumor Hypomethylation at 6p21.3 Associates with Longer Time to Recurrence of High-Grade Serous Epithelial Ovarian Cancer
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Journal Articles

Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with IL1A and TNFSF10

Bridget Charbonneau, Matthew S. Block, William R. Bamlet, Robert A. Vierkant, Kimberly R. Kalli, Zachary Fogarty, David N. Rider, Thomas A. Sellers, Shelley S. Tworoger, Elizabeth Poole, Harvey A. Risch, Helga B. Salvesen, Lambertus A. Kiemeney, Laura Baglietto, Graham G. Giles, Gianluca Severi, Britton Trabert, Nicolas Wentzensen, Georgia Chenevix-Trench, for AOCS/ACS group, Alice S. Whittemore, Weiva Sieh, Jenny Chang-Claude, Elisa V. Bandera, Irene Orlow, Kathryn Terry, Marc T. Goodman, Pamela J. Thompson, Linda S. Cook, Mary Anne Rossing, Roberta B. Ness, Steven A. Narod, Jolanta Kupryjanczyk, Karen Lu, Ralf Butzow, Thilo Dörk, Tanja Pejovic, Ian Campbell, Nhu D. Le, Clareann H. Bunker, Natalia Bogdanova, Ingo B. Runnebaum, Diana Eccles, James Paul, Anna H. Wu, Simon A. Gayther, Estrid Hogdall, Florian Heitz, Stanley B. Kaye, Beth Y. Karlan, Hoda Anton-Culver, Jacek Gronwald, Claus K. Hogdall, Diether Lambrechts, Peter A. Fasching, Usha Menon, Joellen Schildkraut, Celeste Leigh Pearce, Douglas A. Levine, Susanne Kruger Kjaer, Daniel Cramer, James M. Flanagan, Catherine M. Phelan, Robert Brown, Leon F.A.G. Massuger, Honglin Song, Jennifer A. Doherty, Camilla Krakstad, Dong Liang, Kunle Odunsi, Andrew Berchuck, Allan Jensen, Jan Lubiński, Heli Nevanlinna, Yukie T. Bean, Galina Lurie, Argyrios Ziogas, Christine Walsh, Evelyn Despierre, Louise Brinton, Alexander Hein, Anja Rudolph, Agnieszka Dansonka-Mieszkowska, Sara H. Olson, Philipp Harter, Jonathan Tyrer, Allison F. Vitonis, Angela Brooks-Wilson, Katja K. Aben, Malcolm C. Pike, Susan J. Ramus, Elisabeth Wik, Cezary Cybulski, Jie Lin, Lara Sucheston, Robert Edwards, Valerie McGuire, Jenny Lester, Andreas du Bois, Lene Lundvall, Shan Wang-Gohrke, Lukasz M. Szafron, Sandrina Lambrechts, Hannah Yang, Matthias W. Beckmann, Liisa M. Pelttari, Anne M. Van Altena, David van den Berg, Mari K. Halle, Aleksandra Gentry-Maharaj, Ira Schwaab, Urmila Chandran, Janusz Menkiszak, Arif B. Ekici, Lynne R. Wilkens, Arto Leminen, Francesmary Modugno, Grace Friel, Joseph H. Rothstein, Ignace Vergote, Montserrat Garcia-Closas, Michelle A.T. Hildebrandt, Piotr Sobiczewski, Linda E. Kelemen, Paul D.P. Pharoah, Kirsten Moysich, Keith L. Knutson, Julie M. Cunningham, Brooke L. Fridley, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2014) 74 (3): 852–861.
https://doi.org/10.1158/0008-5472.CAN-13-1051
Published: 02 February 2014
View article titled, Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with <em>IL1A</em> and <em>TNFSF10</em>
Open the PDF for Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with <em>IL1A</em> and <em>TNFSF10</em> in another window
Includes: Supplementary data
Journal Articles

APOBEC3B Upregulation and Genomic Mutation Patterns in Serous Ovarian Carcinoma

Brandon Leonard, Steven N. Hart, Michael B. Burns, Michael A. Carpenter, Nuri A. Temiz, Anurag Rathore, Rachel I. Vogel, Jason B. Nikas, Emily K. Law, William L. Brown, Ying Li, Yuji Zhang, Matthew J. Maurer, Ann L. Oberg, Julie M. Cunningham, Viji Shridhar, Debra A. Bell, Craig April, David Bentley, Marina Bibikova, R. Keira Cheetham, Jian-Bing Fan, Russell Grocock, Sean Humphray, Zoya Kingsbury, John Peden, Jeremy Chien, Elizabeth M. Swisher, Lynn C. Hartmann, Kimberly R. Kalli, Ellen L. Goode, Hugues Sicotte, Scott H. Kaufmann, Reuben S. Harris
Journal: Cancer Research
Cancer Res (2013) 73 (24): 7222–7231.
https://doi.org/10.1158/0008-5472.CAN-13-1753
Published: 16 December 2013
View article titled, APOBEC3B Upregulation and Genomic Mutation Patterns in Serous Ovarian Carcinoma
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Includes: Supplementary data
Journal Articles

Abstract 1434: Levels of IL-12 family cytokines in ascitic fluid are associated with extent and resectability of ovarian cancer and correlate with overall survival.

Eati Basal, Mathew S. Block, Matthew J. Maurer, Krista Goergen, Courtney L. Erskine, Marshall Behrens, Kimberly R. Kalli, Keith Knutson, William Cliby
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 1434.
https://doi.org/10.1158/1538-7445.AM2013-1434
Published: 15 April 2013
View article titled, Abstract 1434: Levels of IL-12 family cytokines in ascitic fluid are associated with extent and resectability of ovarian cancer and correlate with overall survival.
Journal Articles

Abstract 4844: Polymorphisms in regulatory T cell related genes and ovarian cancer survival.

Bridget Charbonneau, Keith Knutson, Robert A. Vierkant, Julie M. Cunningham, Zachary C. Fogarty, Kimberly R. Kalli, Matthew J. Maurer, Ann L. Oberg, Brooke L. Fridley, Claudia C. Preston, Paul D.P. Pharoah, Susan J. Ramus, Catherine M. Phelan, Kunle Odunsi, Kirsten Moysich, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4844.
https://doi.org/10.1158/1538-7445.AM2013-4844
Published: 15 April 2013
View article titled, Abstract 4844: Polymorphisms in regulatory T cell related genes and ovarian cancer survival.
Journal Articles

Abstract 3476: Higher plasma levels of heparan sulfate are associated with improved survival of patients with advanced ovarian cancer.

Matthew S. Block, Matthew J. Maurer, Krista M. Goergen, Courtney L. Erskine, Marshall D. Behrens, Kimberly R. Kalli, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 3476.
https://doi.org/10.1158/1538-7445.AM2013-3476
Published: 15 April 2013
View article titled, Abstract 3476: Higher plasma levels of heparan sulfate are associated with improved survival of patients with advanced ovarian cancer.
Journal Articles

Abstract 1382: Increased expression of placental growth factor is linked with shortened survival of patients with advanced ovarian cancer

Matthew S. Block, Matthew J. Maurer, Priya Ramar, Marshall D. Behrens, Courtney L. Erskine, Kimberly R. Kalli, Lynn C. Hartmann, Keith L. Knutson
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 1382.
https://doi.org/10.1158/1538-7445.AM2012-1382
Published: 15 April 2012
View article titled, Abstract 1382: Increased expression of placental growth factor is linked with shortened survival of patients with advanced ovarian cancer
Journal Articles

Abstract 5008: Genome-wide methylation and ovarian cancer survival

Janet E. Olson, Mine S. Cicek, Brooke L. Fridley, Sebastian M. Armasu, Melissa C. Larson, Robert A. Vierkant, David L. Rider, Kimberly R. Kalli, Julie M. Cunningham, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 5008.
https://doi.org/10.1158/1538-7445.AM2012-5008
Published: 15 April 2012
View article titled, Abstract 5008: Genome-wide methylation and ovarian cancer survival