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Journal Articles

Abstract 6400: JBrowse 2: An extensible open-source platform for modern genome analysis

Scott Cain, Robin Haw, Caroline Bridge, Junjun Zhang, Robert Buels, Colin Diesh, Garrett Stevens, Teresa Martinez, Peter K. Xie, Elliot Hershberg, Shihab Dider, Lincoln Stein, Ian Holmes
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 6400.
DOI: https://doi.org/10.1158/1538-7445.AM2022-6400
Published: 15 June 2022
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Journal Articles

Abstract LB503: Using JBrowse 2 plugins to visualize cancer genomic data

Robin Andrew Haw, Colin Diesh, Caroline Bridge, Rob Buels, Garrett Stevens, Peter Xie, Teresa Martinez, Elliot Hershberg, Junjun Zhang, Shihab Dider, Scott Cain, Lincoln Stein, Ian Holmes
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): LB503.
DOI: https://doi.org/10.1158/1538-7445.AM2022-LB503
Published: 15 June 2022
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Journal Articles

Abstract 2465: Genomic harmonization of the Data Resource Center for Gabriella Miller Kids First Pediatric Research Program

Yuankun Zhu, Miguel Brown, Batsal Devkota, Bailey Farrow, Bogdan Gavrilovic, Allison Heath, Kyle Hernandez, Avi Kelman, Parimala Killada, Meen Chul Kim, Daniel Kolbman, Mateusz Koptyra, Milan Kovacevic, Maarten Leerkes, Alex Lubneuski, Michele Mattioni, Pichai Raman, Adam Resnick, Nikola Skundric, Deanne Taylor, Junjun Zhang, Bo Zhang, Phillip B. Storm
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2465.
DOI: https://doi.org/10.1158/1538-7445.AM2019-2465
Published: 01 July 2019
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Journal Articles

Developing Cancer Informatics Applications and Tools Using the NCI Genomic Data Commons API

Shane Wilson, Michael Fitzsimons, Martin Ferguson, Allison Heath, Mark Jensen, Josh Miller, Mark W. Murphy, James Porter, Himanso Sahni, Louis Staudt, Yajing Tang, Zhining Wang, Christine Yu, Junjun Zhang, Vincent Ferretti, Robert L. Grossman
Journal: Cancer Research
Cancer Res (2017) 77 (21): e15–e18.
DOI: https://doi.org/10.1158/0008-5472.CAN-17-0598
Published: 31 October 2017
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Includes: Multimedia, Supplementary data
Journal Articles

Abstract 378: The Cancer Genome Collaboratory

Christina K. Yung, George L. Mihaiescu, Bob Tiernay, Junjun Zhang, Francois Gerthoffert, Andy Yang, Jared Baker, Guillaume Bourque, Paul C. Boutros, Bartha M. Knoppers, BF Francis Ouellette, Cenk Sahinalp, Sohrab P. Shah, Vincent Ferretti, Lincoln D. Stein
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 378.
DOI: https://doi.org/10.1158/1538-7445.AM2017-378
Published: 01 July 2017
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Journal Articles

Abstract SY10-02: Pan-cancer study of recurrent and heterogeneous RNA aberrations and association with whole-genome variants

Samirkumar Amin, Philip Awadalla, Andrew Biankin, Paul Boutros, Alvis Brazma, Angela Norie Brooks, Claudia Calabrese, David Chang, Aurélien Chateigner, Ken Chen, Zechen Chong, Brian Craft, Chad Creighton, Deniz Demircioğlu, Nuno Fonseca, Milana Frenkel-Morgenstern, Gad Getz, Jonathan Göke, Mary Goldman, Liliana Greger, Syed Haider, Yao He, Katherine Hoadley, Yuan Ji, Andre Kahles, Ekta Khurana, Jan Korbel, Kjong Lehmann, Han Liang, Fenglin Liu, Maximillian Marin, Matthew Meyerson, Akinyemi Ojesina, Francis Ouellette, Chandra Pedamallu, Marc Perry, Gunnar Rätsch, Roland Schwarz, Yuichi Shiraishi, Cameron Soulette, Oliver Stegle, Patrick Tan, Alfonso Valencia, Linda Xiang, Christina Yung, Junjun Zhang, Fan Zhang, Zemin Zhang, Jingchun Zhu
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): SY10-02.
DOI: https://doi.org/10.1158/1538-7445.AM2017-SY10-02
Published: 01 July 2017
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Journal Articles

Abstract 2602: The ICGC data portal and its underlying open source software architecture

Junjun Zhang, Bob Tiernay, Dusan Andric, Phuong-My Do, Sid Joshi, Vitalii Slobodianyk, Chang Wang, Shane Wilson, Andy Yang, Vincent Ferretti
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2602.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2602
Published: 01 July 2017
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Journal Articles

Murine metastatic medulloblastoma driven by Sleeping Beauty transposition identifies genes and pathways important for medulloblastoma initiation and progression

Xiaochong Wu, Lara Collier, Jessica Mcleod, Paul Northcott, Sidney Croul, Jeff MacDonald, Junjun Zhang, Stephen Scherer, David Largaespada, Michael Taylor
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): 4135.
Published: 01 May 2008
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