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Julie M. Cunningham
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Journal Articles

Abstract 4291: Deconvolution of cell type composition in FFPE tissue: Application to benign breast disease

Yuanhang Liu, Chen Wang, Stacey J. Winham, Aditya Bhagwate, Robert A. Vierkant, Julie M. Cunningham, Bryan M. McCauley, William A. Jons, Derek C. Radisky, Amy C. Degnim
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4291.
https://doi.org/10.1158/1538-7445.AM2023-4291
Published: 04 April 2023
View article titled, Abstract 4291: Deconvolution of cell type composition in FFPE tissue: Application to benign breast disease
Journal Articles

Abstract 2274: Somatic variant burdenin benign breast disease and association with risk of subsequent breast cancer

Stacey J. Winham, Julie M. Cunningham, Yuanhang Liu, Aditya V. Bhagwate, Ethan P. Heinzen, Samantha J. McDonough, Melody L. Stallings-Mann, Robert A. Vierkant, Jodi M. Carter, Mark E. Sherman, Derek C. Radisky, Amy C. Degnim, Chen Wang
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2274.
https://doi.org/10.1158/1538-7445.AM2021-2274
Published: 01 July 2021
View article titled, Abstract 2274: Somatic variant burdenin benign breast disease and association with risk of subsequent breast cancer
Journal Articles

Abstract 225: Tumor-infiltrating CD8-positive T-lymphocytes in tubo-ovarian high-grade serous cancer are associated with multiple germline variants in 22q12.1 in a genome-wide association analysis

Yanina Natanzon, Martin Köbel, Stacey J. Winham, Sebastian M. Armasu, Bryan M. McCauley, Robert A. Vierkant, Julie M. Cunningham, David Bowtell, Ian G. Campbell, Jenny Chang-Claude, Anna deFazio, Peter A. Fasching, Mark T. Goodman, Beth Y. Karlan, Francesmary Modugno, Kirsten B. Moysich, Roberta B. Ness, Weiva Sieh, Paul D. Pharoah, Susan J. Ramus, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 225.
https://doi.org/10.1158/1538-7445.AM2018-225
Published: 01 July 2018
View article titled, Abstract 225: Tumor-infiltrating CD8-positive T-lymphocytes in tubo-ovarian high-grade serous cancer are associated with multiple germline variants in 22q12.1 in a genome-wide association analysis
Journal Articles

Abstract 3368: Omics data integration analysis in high grade serous ovarian cancer: results from three studies

Yanina Natanzon, Madalene Earp, Julie M. Cunningham, Kimberly R. Kalli, Stacey J. Winham, Sebastian M. Armasu, Melissa C. Larson, Chen Wang, David D. Bowtell, Dale W. Garsed, Ellen Goode
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3368.
https://doi.org/10.1158/1538-7445.AM2017-3368
Published: 01 July 2017
View article titled, Abstract 3368: <em>Omics</em> data integration analysis in high grade serous ovarian cancer: results from three studies
Journal Articles

Abstract 505: Optimized 7-Plex cell-free DNA assay for clinically relevant KRAS mutations in colorectal cancer

Rajeswari Avula, Benjamin R. Kipp, Jesse S. Voss, Keegan E. Haselkorn, W. Edward Highsmith, Kevin C. Halling, Jeremy C. Jones, Steven R. Alberts, Michael B. Campion, Cassandra J. Nelson, Jin Jen, Eric D. Wieben, Julie M. Cunningham, Minetta C. Liu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 505.
https://doi.org/10.1158/1538-7445.AM2016-505
Published: 15 July 2016
View article titled, Abstract 505: Optimized 7-Plex cell-free DNA assay for clinically relevant KRAS mutations in colorectal cancer
Journal Articles

Abstract P6-10-06: Histologic features of benign breast biopsy tissue and association with ER positive and ER negative breast cancer in the Mayo BBD cohort study

Amy C Degnim, Derek C Radisky, Robert A Vierkant, Ryan D Frank, Marlene H Frost, Vernon S Pankratz, Celine M Vachon, Tanya L Hoskin, Julie M Cunningham, Chen Wang, Jean-Pierre Kocher, Teresa M Allers, Joanne L Johnson, Tina J Hieken, Karthik Ghosh, Lynn C Hartmann, Daniel W Visscher
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): P6-10-06.
https://doi.org/10.1158/1538-7445.SABCS14-P6-10-06
Published: 01 May 2015
View article titled, Abstract P6-10-06: Histologic features of benign breast biopsy tissue and association with ER positive and ER negative breast cancer in the Mayo BBD cohort study
Journal Articles

Abstract 260: Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

Devin C. Koestler, Prabhakar Chalise, Mine S. Cicek, Julie M. Cunningham, Sebastian Armasu, Melissa C. Larson, Jeremy Chien, Matthew Block, Kimberly R. Kalli, Thomas A. Sellers, Ellen L. Goode, Brooke L. Fridley
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 260.
https://doi.org/10.1158/1538-7445.AM2014-260
Published: 01 October 2014
View article titled, Abstract 260: Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer
Journal Articles

Abstract 5102: Telomeres and survival in stage III colon cancers: Findings from NCCTG N0147 (Alliance) study

Nivedita Basu, Ruth A. Johnson, Qian Shi, Garth D. Nelson, Julie M. Cunningham, Richard M. Goldberg, Frank A. Sinicrope, Daniel J. Sargent, Steven R. Alberts, Gloria M. Petersen, Stephen N. Thibodeau, Halcyon G. Skinner, Kristin Litzelman, Songwon Seo, Russell J. Vanderboom, Ronald E. Gangnon, Corinne D. Engelman, David N. Rider, Lisa A. Boardman
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 5102.
https://doi.org/10.1158/1538-7445.AM2014-5102
Published: 01 October 2014
View article titled, Abstract 5102: Telomeres and survival in stage III colon cancers: Findings from NCCTG N0147 (Alliance) study
Journal Articles

Tumor Hypomethylation at 6p21.3 Associates with Longer Time to Recurrence of High-Grade Serous Epithelial Ovarian Cancer

Chen Wang, Mine S. Cicek, Bridget Charbonneau, Kimberly R. Kalli, Sebastian M. Armasu, Melissa C. Larson, Gottfried E. Konecny, Boris Winterhoff, Jian-Bing Fan, Marina Bibikova, Jeremy Chien, Viji Shridhar, Matthew S. Block, Lynn C. Hartmann, Daniel W. Visscher, Julie M. Cunningham, Keith L. Knutson, Brooke L. Fridley, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2014) 74 (11): 3084–3091.
https://doi.org/10.1158/0008-5472.CAN-13-3198
Published: 29 May 2014
View article titled, Tumor Hypomethylation at 6p21.3 Associates with Longer Time to Recurrence of High-Grade Serous Epithelial Ovarian Cancer
Open the PDF for Tumor Hypomethylation at 6p21.3 Associates with Longer Time to Recurrence of High-Grade Serous Epithelial Ovarian Cancer in another window
Journal Articles

Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with IL1A and TNFSF10

Bridget Charbonneau, Matthew S. Block, William R. Bamlet, Robert A. Vierkant, Kimberly R. Kalli, Zachary Fogarty, David N. Rider, Thomas A. Sellers, Shelley S. Tworoger, Elizabeth Poole, Harvey A. Risch, Helga B. Salvesen, Lambertus A. Kiemeney, Laura Baglietto, Graham G. Giles, Gianluca Severi, Britton Trabert, Nicolas Wentzensen, Georgia Chenevix-Trench, for AOCS/ACS group, Alice S. Whittemore, Weiva Sieh, Jenny Chang-Claude, Elisa V. Bandera, Irene Orlow, Kathryn Terry, Marc T. Goodman, Pamela J. Thompson, Linda S. Cook, Mary Anne Rossing, Roberta B. Ness, Steven A. Narod, Jolanta Kupryjanczyk, Karen Lu, Ralf Butzow, Thilo Dörk, Tanja Pejovic, Ian Campbell, Nhu D. Le, Clareann H. Bunker, Natalia Bogdanova, Ingo B. Runnebaum, Diana Eccles, James Paul, Anna H. Wu, Simon A. Gayther, Estrid Hogdall, Florian Heitz, Stanley B. Kaye, Beth Y. Karlan, Hoda Anton-Culver, Jacek Gronwald, Claus K. Hogdall, Diether Lambrechts, Peter A. Fasching, Usha Menon, Joellen Schildkraut, Celeste Leigh Pearce, Douglas A. Levine, Susanne Kruger Kjaer, Daniel Cramer, James M. Flanagan, Catherine M. Phelan, Robert Brown, Leon F.A.G. Massuger, Honglin Song, Jennifer A. Doherty, Camilla Krakstad, Dong Liang, Kunle Odunsi, Andrew Berchuck, Allan Jensen, Jan Lubiński, Heli Nevanlinna, Yukie T. Bean, Galina Lurie, Argyrios Ziogas, Christine Walsh, Evelyn Despierre, Louise Brinton, Alexander Hein, Anja Rudolph, Agnieszka Dansonka-Mieszkowska, Sara H. Olson, Philipp Harter, Jonathan Tyrer, Allison F. Vitonis, Angela Brooks-Wilson, Katja K. Aben, Malcolm C. Pike, Susan J. Ramus, Elisabeth Wik, Cezary Cybulski, Jie Lin, Lara Sucheston, Robert Edwards, Valerie McGuire, Jenny Lester, Andreas du Bois, Lene Lundvall, Shan Wang-Gohrke, Lukasz M. Szafron, Sandrina Lambrechts, Hannah Yang, Matthias W. Beckmann, Liisa M. Pelttari, Anne M. Van Altena, David van den Berg, Mari K. Halle, Aleksandra Gentry-Maharaj, Ira Schwaab, Urmila Chandran, Janusz Menkiszak, Arif B. Ekici, Lynne R. Wilkens, Arto Leminen, Francesmary Modugno, Grace Friel, Joseph H. Rothstein, Ignace Vergote, Montserrat Garcia-Closas, Michelle A.T. Hildebrandt, Piotr Sobiczewski, Linda E. Kelemen, Paul D.P. Pharoah, Kirsten Moysich, Keith L. Knutson, Julie M. Cunningham, Brooke L. Fridley, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2014) 74 (3): 852–861.
https://doi.org/10.1158/0008-5472.CAN-13-1051
Published: 02 February 2014
View article titled, Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with <em>IL1A</em> and <em>TNFSF10</em>
Open the PDF for Risk of Ovarian Cancer and the NF-κB Pathway: Genetic Association with <em>IL1A</em> and <em>TNFSF10</em> in another window
Includes: Supplementary data
Journal Articles

APOBEC3B Upregulation and Genomic Mutation Patterns in Serous Ovarian Carcinoma

Brandon Leonard, Steven N. Hart, Michael B. Burns, Michael A. Carpenter, Nuri A. Temiz, Anurag Rathore, Rachel I. Vogel, Jason B. Nikas, Emily K. Law, William L. Brown, Ying Li, Yuji Zhang, Matthew J. Maurer, Ann L. Oberg, Julie M. Cunningham, Viji Shridhar, Debra A. Bell, Craig April, David Bentley, Marina Bibikova, R. Keira Cheetham, Jian-Bing Fan, Russell Grocock, Sean Humphray, Zoya Kingsbury, John Peden, Jeremy Chien, Elizabeth M. Swisher, Lynn C. Hartmann, Kimberly R. Kalli, Ellen L. Goode, Hugues Sicotte, Scott H. Kaufmann, Reuben S. Harris
Journal: Cancer Research
Cancer Res (2013) 73 (24): 7222–7231.
https://doi.org/10.1158/0008-5472.CAN-13-1753
Published: 16 December 2013
View article titled, APOBEC3B Upregulation and Genomic Mutation Patterns in Serous Ovarian Carcinoma
Open the PDF for APOBEC3B Upregulation and Genomic Mutation Patterns in Serous Ovarian Carcinoma in another window
Includes: Supplementary data
Journal Articles

Abstract 4850: Variation in circadian rhythm genes influence epithelial ovarian cancer risk and invasiveness.

Heather Jim, Jonathan Tyrer, Hui-Yi Lin, Gang Han, Xiaotao Qu, Ellen L. Goode, Zhihua Chen, Ya-Yu Tsai, Julie M. Cunningham, Edward Iversen, Susan Ramus, Andrew Berchuck, Joellen Schildkraut, Alvaro Monteiro, Simon Gayther, Steven A. Narod, Thomas A. Sellers, Paul Pharoah, Catherine M. Phelan
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4850.
https://doi.org/10.1158/1538-7445.AM2013-4850
Published: 15 April 2013
View article titled, Abstract 4850: Variation in circadian rhythm genes influence epithelial ovarian cancer risk and invasiveness.
Journal Articles

Abstract 3644: Variation in transmembrane transport genes influence epithelial ovarian cancer risk and histopathologic subtype.

Ganna Chornokur, Jonathan Tyrer, Hui-Yi Lin, Gang Han, Xiaotao Qu, Chen Zhihua, Ya-Yu Tsai, Ellen L. Goode, Julie M. Cunningham, Edwin Iversen, Susan J. Ramus, Andrew Berchuk, Joellen M. Schildkraut, Alvaro Monteiro, Simon A. Gayther, Steven A. Narod, Paul Pharoah, Thomas A. Sellers, Catherine M. Phelan
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 3644.
https://doi.org/10.1158/1538-7445.AM2013-3644
Published: 15 April 2013
View article titled, Abstract 3644: Variation in transmembrane transport genes influence epithelial ovarian cancer risk and histopathologic subtype.
Journal Articles

Abstract 4844: Polymorphisms in regulatory T cell related genes and ovarian cancer survival.

Bridget Charbonneau, Keith Knutson, Robert A. Vierkant, Julie M. Cunningham, Zachary C. Fogarty, Kimberly R. Kalli, Matthew J. Maurer, Ann L. Oberg, Brooke L. Fridley, Claudia C. Preston, Paul D.P. Pharoah, Susan J. Ramus, Catherine M. Phelan, Kunle Odunsi, Kirsten Moysich, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4844.
https://doi.org/10.1158/1538-7445.AM2013-4844
Published: 15 April 2013
View article titled, Abstract 4844: Polymorphisms in regulatory T cell related genes and ovarian cancer survival.
Journal Articles

Abstract LB-196: Sequencing symptom control: Results from the Alliance N08C1 and N08CA genetics of chemotherapy neuropathy trials.

Andreas S. Beutler, Amit Kulkarni, Rahul Kanwar, Rui Qin, Julie M. Cunningham, Terry M. Therneau, Charles L. Loprinzi
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): LB-196.
https://doi.org/10.1158/1538-7445.AM2013-LB-196
Published: 15 April 2013
View article titled, Abstract LB-196: Sequencing symptom control: Results from the Alliance N08C1 and N08CA genetics of chemotherapy neuropathy trials.
Journal Articles

Abstract 5008: Genome-wide methylation and ovarian cancer survival

Janet E. Olson, Mine S. Cicek, Brooke L. Fridley, Sebastian M. Armasu, Melissa C. Larson, Robert A. Vierkant, David L. Rider, Kimberly R. Kalli, Julie M. Cunningham, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 5008.
https://doi.org/10.1158/1538-7445.AM2012-5008
Published: 15 April 2012
View article titled, Abstract 5008: Genome-wide methylation and ovarian cancer survival
Journal Articles

Abstract 2930: Novel colorectal cancer loci in multiplex-proficient mismatch repair families

Julie M. Cunningham, Mine Cicek, Fridley Brooke, Daniel Serie, William Bamlet, Brenda Diergaarde, Robert Haile, Loic Le Marchand, Theodore Kontriris, Ban Younghusband, Steven Gallinger, Polly Newcomb, John Hopper, Mark Jenkins, Graham Casey, Frederick Schumacher, Zhu Chen, Allyson Templeton, Ingrid Winship, Roger Green, Macrae Finlay, Susan Parry, Graeme Young, Joanne Young, Daniel Buchanan, Duncan Thomas, D. Timothy Bishop, Noralane Lindor, Stephen Thibodeau, John Potter, Ellen Goode, Colon CFR.
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 2930.
https://doi.org/10.1158/1538-7445.AM2012-2930
Published: 15 April 2012
View article titled, Abstract 2930: Novel colorectal cancer loci in multiplex-proficient mismatch repair families
Journal Articles

Abstract 2927: MicroRNA binding site polymorphisms influence ovarian cancer risk in the collaborative oncological gene-environment study

Jennifer Permuth-Wey, Hui-Yi Lin, Ya-Yu Tsai, Chen Zhihua, Y. Ann Chen, Jill Barnholtz-Sloan, Micheal J. Birrer, Stephen Chanock, Daniel W. Cramer, Julie M. Cunningham, David Fenstermacher, Brooke Fridley, Montserrat Garcia-Closas, Simon A. Gayther, Alexandra Gentry-Maharaj, Jesus Gonzalez-Bosquet, Edwin Iversen, Heather Jim, John McLaughlin, Usha Menon, Alvaro Monteiro, Steven A. Narod, Catherine M. Phelan, Susan Ramus, Harvey Risch, Honglin Song, Rebecca Sutphen, Kathryn L. Terry, Jonathan Tyrer, Robert A. Vierkant, Nicolas Wentzensen, Johnathan M. Lancaster, Jin Q. Cheng, Andrew Berchuk, Paul D.P Pharoah, Joellen M. Schildkraut, Ellen L. Goode, Thomas A. Sellers
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 2927.
https://doi.org/10.1158/1538-7445.AM2012-2927
Published: 15 April 2012
View article titled, Abstract 2927: MicroRNA binding site polymorphisms influence ovarian cancer risk in the collaborative oncological gene-environment study
Journal Articles

Abstract 1649: Genome-wide association study of copy number variations in serous epithelial ovarian cancer susceptibility

Ya-Yu Tsai, Alvaro N.A. Monteiro, Catherine M. Phelan, Edwin Iversen, Brooke L. Fridley, Y. Ann Chen, Zhihua Chen, Jenny Permuth-Wey, Heather S. Jim, Robert A. Vierkant, Julie M. Cunningham, Jill Barnholtz-Sloan, Avery August, Rebecca Sutphen, Steven Narod, Harvey Risch, Joellen M. Schildkraut, Ellen L. Goode, David Fenstermacher, Thomas A. Sellers
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 1649.
https://doi.org/10.1158/1538-7445.AM2012-1649
Published: 15 April 2012
View article titled, Abstract 1649: Genome-wide association study of copy number variations in serous epithelial ovarian cancer susceptibility
Journal Articles

Abstract 2603: Subtype-specific ovarian cancer risk associated with SNPs in IL1A

Bridget Charbonneau, Kristin L. White, Joellen M. Schildkraut, Rachel T. Palmieri, Ed Iversen, Andrew Berchuck, Robert A. Vierkant, David N. Rider, Mine S. Cicek, Rebecca Sutphen, Michael J. Birrer, Paul P.D. Pharoah, Honglin Song, Jonathan Tyrer, Simon A. Gayther, Susan J. Ramus, Nicolas Wentzensen, Hannah P. Yang, Montserrat Garcia-Closas, Catherine M. Phelan, Julie M. Cunningham, Brooke L. Fridley, Thomas A. Sellers, Ellen L. Goode
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 2603.
https://doi.org/10.1158/1538-7445.AM2012-2603
Published: 15 April 2012
View article titled, Abstract 2603: Subtype-specific ovarian cancer risk associated with SNPs in <em>IL1A</em>