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Joseph A. Califano
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Journal Articles

Abstract 3764: Mapping the tumor-sentinel node immune migratome demonstrates a key role for CCR7+ dendritic cells in the successful response to immunoradiotherapy

Free
Robert Saddawi-Konefka, Riyam Al Msari, Cynthia Tang, Chad Philips, Sayed Sadat, Lauren M. Clubb, Sarah Luna, Santiago Fassardi, Riley Jones, Ida Franiak Pietryga, Farhoud Faraji, Shiruyeh Schokrpur, Bryan S. Yung, Michael M. Allevato, Chanond A. Nasamran, Daisy Chilin- Fuentes, Sara Brin Rosenthal, Shawn M. Jensen, Bernard A. Fox, Richard Bell, J. Silvio Gutkind, Andrew Sharabi, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 3764.
https://doi.org/10.1158/1538-7445.AM2025-3764
Published: 21 April 2025
View articletitled, Abstract 3764: Mapping the tumor-sentinel node immune migratome demonstrates a key role for CCR7+ dendritic cells in the successful response to immunoradiotherapy
Journal Articles

Abstract A03: Predictors of HPV-related head and neck cancer progression identified through patient-derived models

Free
Nicole D. Facompre, Pavithra Rajagopalan, Varun Sahu, Frederico O. Gleber-Netto, Joseph A. Califano, Curtis R. Pickering, Phyllis A. Gimotty, Devraj Basu
Journal: Cancer Research
Cancer Res (2020) 80 (11_Supplement): A03.
https://doi.org/10.1158/1538-7445.CAMODELS2020-A03
Published: 02 June 2020
View articletitled, Abstract A03: Predictors of HPV-related head and neck cancer progression identified through patient-derived models
Journal Articles

HPV16 E5 Mediates Resistance to PD-L1 Blockade and Can Be Targeted with Rimantadine in Head and Neck Cancer

Available to Purchase
Sayuri Miyauchi, P. Dominick Sanders, Kripa Guram, Sangwoo S. Kim, Francesca Paolini, Aldo Venuti, Ezra E.W. Cohen, J. Silvio Gutkind, Joseph A. Califano, Andrew B. Sharabi
Journal: Cancer Research
Cancer Res (2020) 80 (4): 732–746.
https://doi.org/10.1158/0008-5472.CAN-19-1771
Published: 14 February 2020
View articletitled, HPV16 E5 Mediates Resistance to PD-L1 Blockade and Can Be Targeted with Rimantadine in Head and Neck Cancer
Open the PDF for HPV16 E5 Mediates Resistance to PD-L1 Blockade and Can Be Targeted with Rimantadine in Head and Neck Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 364: Differentially methylated super-enhancers regulate gene expression in human papillomavirus-related head and neck squamous cell carcinoma

Free
Emily L. Flam, Dylan Z. Kelley, Elena Stavrovskaya, Ludmila Danilova, Theresa Guo, Michael Considine, Jiang Qian, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 364.
https://doi.org/10.1158/1538-7445.AM2018-364
Published: 01 July 2018
View articletitled, Abstract 364: Differentially methylated super-enhancers regulate gene expression in human papillomavirus-related head and neck squamous cell carcinoma
Journal Articles

Abstract 3320: Discovery and development of DNA methylation biomarkers in human papillomavirus related oropharyngeal squamous cell carcinoma

Free
Shuling Ren, Daria A. Gaykalova, Theresa W. Guo, Alexander V. Favorov, Elana J. Fertig, Zubair Khan, Peter M. DeJong, Mizuo Ando, Chao Liu, Akihiro Sakai, Takahito Fukusumi, Sunny Haft, Sayed Sadat, J Silvio Gutkind, Wayne M. Koch, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3320.
https://doi.org/10.1158/1538-7445.AM2018-3320
Published: 01 July 2018
View articletitled, Abstract 3320: Discovery and development of DNA methylation biomarkers in human papillomavirus related oropharyngeal squamous cell carcinoma
Journal Articles

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Free
Dylan Z. Kelley, Emily L. Flam, Evgeny Izumchenko, Ludmila V. Danilova, Hildegard A. Wulf, Theresa Guo, Dzov A. Singman, Bahman Afsari, Alyza M. Skaist, Michael Considine, Jane A. Welch, Elena Stavrovskaya, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah J. Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (23): 6538–6550.
https://doi.org/10.1158/0008-5472.CAN-17-0833
Published: 30 November 2017
View articletitled, Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Open the PDF for Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks in another window
Includes: Supplementary data
Journal Articles

Abstract 4800: A next-gen animal model to Study PIK3CA-mTOR driven HPV-related oral malignancies

Free
Juan Luis Callejas-Valera, Ramiro Iglesias-Bartolome, Panomwat Amornphimoltham, Julia Palacios-Garcia, Daniel Martin, Joseph A. Califano, Alfredo A. Molinolo, J.Silvio Gutkind
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 4800.
https://doi.org/10.1158/1538-7445.AM2017-4800
Published: 01 July 2017
View articletitled, Abstract 4800: A next-gen animal model to Study PIK3CA-mTOR driven HPV-related oral malignancies
Journal Articles

Abstract 1332: NOTCH - HEY1 pathway induces EMT in head and neck squamous cell carcinoma

Free
Takahito Fukusumi, Theresa W. Guo, Shuling Ren, Akihiro Sakai, Mizuo Ando, Sunny Haft, Chao Liu, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 1332.
https://doi.org/10.1158/1538-7445.AM2017-1332
Published: 01 July 2017
View articletitled, Abstract 1332: NOTCH - HEY1 pathway induces EMT in head and neck squamous cell carcinoma
Journal Articles

Abstract 4474: Functional characterization of alternatively spliced GSN in head and neck cancer

Free
Dylan Z. Kelley, Emily L. Flam, Theresa Guo, Craig Bohrson, Michael Considine, Ludmila V. Danilova, Justin A. Bishop, Chi Zhang, Wayne M. Koch, David Sidransky, William Westra, Sarah Wheelan, Liliana Florea, Elana J. Fertig, Joseph A. Califano, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 4474.
https://doi.org/10.1158/1538-7445.AM2017-4474
Published: 01 July 2017
View articletitled, Abstract 4474: Functional characterization of alternatively spliced GSN in head and neck cancer
Journal Articles

Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples

Free
Dylan Z. Kelley, Emily L. Flam, Hildegard A. Wulf, Theresa Guo, Evgeny Izumchenko, Dzov A. Singman, Ludmila V. Danilova, Elena D. Stavrovskaya, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2424.
https://doi.org/10.1158/1538-7445.AM2017-2424
Published: 01 July 2017
View articletitled, Abstract 2424: The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples
Journal Articles

Abstract 3353: An epigenetic biomarker panel in HPV related oropharyngeal squamous cell carcinoma

Free
Shuling Ren, Daria A. Gaykalova, Theresa Guo, Zubair Khan, Mizuo Ando, Sunny Haft, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3353.
https://doi.org/10.1158/1538-7445.AM2017-3353
Published: 01 July 2017
View articletitled, Abstract 3353: An epigenetic biomarker panel in HPV related oropharyngeal squamous cell carcinoma
Journal Articles

Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer

Free
Bahman Afsari, Theresa Guo, Michael Considine, Dylan Kelley, Emily Flam, Liliana Florea, Patrick Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3577.
https://doi.org/10.1158/1538-7445.AM2017-3577
Published: 01 July 2017
View articletitled, Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer
Journal Articles

Abstract 86: Time course analysis of gene expression and epigenetic interactions in acquired cetuximab resistance in head and neck squamous cell carcinoma

Free
Luciane T. Kagohara, Genevieve Stein-O'Brien, Sijia Li, Manjusha Thakar, Ruchira Ranaweera, Michael Considine, Joseph A. Califano, Christine H. Chung, Daria Gaykalova, Elana J. Fertig
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 86.
https://doi.org/10.1158/1538-7445.AM2017-86
Published: 01 July 2017
View articletitled, Abstract 86: Time course analysis of gene expression and epigenetic interactions in acquired cetuximab resistance in head and neck squamous cell carcinoma
Journal Articles

Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC

Free
Daria A. Gaykalova, Veronika Zizkova, Ilse Tiscareno, Yingying Wei, Rajita Vatapalli, Patrick T. Hennessey, Julie Ahn, Ludmila V. Danilova, Zubair Khan, Justin A. Bishop, Wayne M. Koch, William H. Westra, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 815.
https://doi.org/10.1158/1538-7445.AM2015-815
Published: 01 August 2015
View articletitled, Abstract 815: DTX1 is an epigenetically regulated tumor suppressor gene discovered by integrative analysis of epigenetic and transcriptional alterations in HNSCC
Journal Articles

Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma

Free
Theresa Guo, Daria Gaykalova, Michael Considine, Justin A. Bishop, William H. Westra, Zubair Khan, Elana Fertig, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 4807.
https://doi.org/10.1158/1538-7445.AM2015-4807
Published: 01 August 2015
View articletitled, Abstract 4807: Discovery of novel alternative splicing events in human papillomavirus-related oropharyngeal squamous cell carcinoma
Journal Articles

Abstract 1384: Promoter methylation of tumor suppressor genes in convalescent saliva samples from patients with head and neck squamous cell carcinoma

Free
Semra Demokan, Jatinder Kaur, Alice Y. Chuang, Wojciech K. Mydlarz, Kavita M. Pattani, Wayne M. Koch, David Sidransky, Nejat Dalay, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 1384.
https://doi.org/10.1158/1538-7445.AM2014-1384
Published: 01 October 2014
View articletitled, Abstract 1384: Promoter methylation of tumor suppressor genes in convalescent saliva samples from patients with head and neck squamous cell carcinoma
Journal Articles

Abstract 3409: Transcription factor signature of head and neck squamous cell carcinoma

Free
Daria A. Gaykalova, Judi Manola, Hiroyuki Ozawa, Kathryn Morton, Justin Bishop, Michael Considine, Rajni Sharma, Chi Zhang, Elana Fertig, Marietta Tan, Patrick Hennessey, Julie Ahn, Wayne Koch, Zubair Khan, Christine H. Chung, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 3409.
https://doi.org/10.1158/1538-7445.AM2014-3409
Published: 01 October 2014
View articletitled, Abstract 3409: Transcription factor signature of head and neck squamous cell carcinoma
Journal Articles

Activation of the NOTCH Pathway in Head and Neck Cancer

Free
Wenyue Sun, Daria A. Gaykalova, Michael F. Ochs, Elizabeth Mambo, Demetri Arnaoutakis, Yan Liu, Myriam Loyo, Nishant Agrawal, Jason Howard, Ryan Li, Sun Ahn, Elana Fertig, David Sidransky, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Ashish Choudhary, Will Darden, Alex Adai, Gary Latham, Justin Bishop, Rajni Sharma, William H. Westra, Patrick Hennessey, Christine H. Chung, Joseph A. Califano
Journal: Cancer Research
Series: Author Choice
Cancer Res (2014) 74 (4): 1091–1104.
https://doi.org/10.1158/0008-5472.CAN-13-1259
Published: 16 February 2014
View articletitled, Activation of the NOTCH Pathway in Head and Neck Cancer
Open the PDF for Activation of the NOTCH Pathway in Head and Neck Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 666: Validation of nucleolar protein 4 as a novel methylated tumor suppressor gene in head and neck cancer.

Free
Semra Demokan, Alice Y. Chuang, Kavita M. Pattani, David Sidransky, Wayne Koch, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 666.
https://doi.org/10.1158/1538-7445.AM2013-666
Published: 15 April 2013
View articletitled, Abstract 666: Validation of nucleolar protein 4 as a novel methylated tumor suppressor gene in head and neck cancer.
Journal Articles

Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.

Free
Daria A. Gaykalova, Rajita Vatapalli, Yingying Wei, Hao Wang, Patrick Hennessey, Ryan Li, Chi Zhang, Marietta Tan, Zubair Khan, William Westra, Tanbir Khan, David Zaboli, Michael F. Ochs, Joseph A. Califano
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 3554.
https://doi.org/10.1158/1538-7445.AM2013-3554
Published: 15 April 2013
View articletitled, Abstract 3554: Promoter hypermethylation of zinc finger proteins is the novel epigenetic biomarkers of head and neck squamous cell carcinomas.